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Mapping the human genetic architecture of COVID-19.

Nature 600 (7889): 472-477. December 2021

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

Nucleic Acids Research 44 (D1): D27-D37. 4 January 2016

A mechanistic classification of clinical phenotypes in neuroblastoma.
Ackermann, S. and Cartolano, M. and Hero, B. and Welte, A. and Kahlert, Y. and Roderwieser, A. and Bartenhagen, C. and Walter, E. and Gecht, J. and Kerschke, L. and Volland, R. and Menon, R. and Heuckmann, J.M. and Gartlgruber, M. and Hartlieb, S. and Henrich, K.O. and Okonechnikov, K. and Altmüller, J. and Nürnberg, P. and Lefever, S. and de Wilde, B. and Sand, F. and Ikram, F. and Rosswog, C. and Fischer, J. and Theissen, J. and Hertwig, F. and Singhi, A.D. and Simon, T. and Vogel, W. and Perner, S. and Krug, B. and Schmidt, M. and Rahmann, S. and Achter, V. and Lang, U. and Vokuhl, C. and Ortmann, M. and Büttner, R. and Eggert, A. and Speleman, F. and O'Sullivan, R.J. and Thomas, R.K. and Berthold, F. and Vandesompele, J. and Schramm, A. and Westermann, F. and Schulte, J.H. and Peifer, M. and Fischer, M.
Science 362 (6419): 1165-1170. 7 December 2018

Exome sequencing identifies biallelic MSH3 germline mutations as a recessive subtype of colorectal adenomatous polyposis.
Adam, R. and Spier, I. and Zhao, B. and Kloth, M. and Marquez, J. and Hinrichsen, I. and Kirfel, J. and Tafazzoli, A. and Horpaopan, S. and Uhlhaas, S. and Stienen, D. and Friedrichs, N. and Altmüller, J. and Laner, A. and Holzapfel, S. and Peters, S. and Kayser, K. and Thiele, H. and Holinski-Feder, E. and Marra, G. and Kristiansen, G. and Nöthen, M.M. and Büttner, R. and Möslein, G. and Betz, R.C. and Brieger, A. and Lifton, R.P. and Aretz, S.
American Journal of Human Genetics 99 (2): 337-51. 4 August 2016

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.
Adamidi, C. and Wang, Y. and Gruen, D. and Mastrobuoni, G. and You, X. and Tolle, D. and Dodt, M. and Mackowiak, S.D. and Gogol-Doering, A. and Oenal, P. and Rybak, A. and Ross, E. and Alvarado, A.S. and Kempa, S. and Dieterich, C. and Rajewsky, N. and Chen, W.
Genome Research 21 (7): 1193-1200. July 2011

HDHL-INTIMIC: a European knowledge platform on food, diet, intestinal microbiomics, and human health.
Agamennone, V. and Abuja, P.M. and Basic, M. and De Angelis, M. and Gessner, A. and Keijser, B. and Larsen, M. and Pinart, M. and Nimptsch, K. and Pujos-Guillot, E. and Schlicht, K. and Sharon, I. and Untersmayr, E. and Laudes, M. and Pischon, T. and Bouwman, J.
Nutrients 14 (9): 1881. 29 April 2022

An unconventional gatekeeper mutation sensitizes inositol hexakisphosphate kinases to an allosteric inhibitor.
Aguirre, T. and Hostachy, S. and Dornan, G.L. and Neuenschwander, M. and Seyffarth, C. and Haucke, V. and Schütz, A. and von Kries, J.P. and Fiedler, D.
eLife 21 : RP88982. 16 October 2023

Genetic heterogeneity in Pakistani microcephaly families revisited.
Ahmad, I. and Baig, S.M. and Abdulkareem, A.R. and Hussain, M.S. and Sur, I. and Toliat, M.R. and Nürnberg, G. and Dalibor, N. and Moawia, A. and Waseem, S.S. and Asif, M. and Nagra, H. and Sher, M. and Khan, M.M.A. and Hassan, I. and Rehman, S.U. and Thiele, H. and Altmüller, J. and Noegel, A.A. and Nürnberg, P.
Clinical Genetics 92 (1): 62-68. July 2017

The interleukin-11 receptor variant p.W307R results in craniosynostosis in humans.
Ahmad, I. and Lokau, J. and Kespohl, B. and Malik, N.A. and Baig, S.M. and Hartig, R. and Behme, D. and Schwab, R. and Altmüller, J. and Jameel, M. and Mucha, S. and Thiele, H. and Tariq, M. and Nürnberg, P. and Erdmann, J. and Garbers, C.
Scientific Reports 13 (1): 13479. 18 August 2023

Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes.
Ahmed, R. and Chang, Z. and Younis, A.E. and Langnick, C. and Li, N. and Chen, W. and Brattig, N. and Dieterich, C.
Genome Biology and Evolution 5 (7): 1246-1260. 2013

The FGFR inhibitor PD173074 binds to the C-terminus of oncofetal HMGA2 and modulates its DNA-binding and transcriptional activation functions.
Ahmed, S.M. and Ragunathan, P. and Shin, J. and Peter, S. and Kleissle, S. and Neuenschwander, M. and Schäfer, R. and von Kries, J.P. and Grüber, G. and Dröge, P.
FEBS Letters 597 (15): 1977-1988. August 2023

A common building block for the syntheses of amorfrutin and cajaninstilbene acid libraries toward efficient binding with peroxisome proliferator-activated receptors.
Aidhen, I.S. and Mukkamala, R. and Weidner, C. and Sauer, S.
Organic Letters 17 (2): 194-197. 16 January 2015

Transcriptional features of genomic regulatory blocks.
Akalin, A. and Fredman, D. and Arner, E and Dong, X and Bryne, JC and Suzuki, H. and Daub, CO and Hayashizaki, Y and Lenhard, B
Genome Biology 10 (4): R38. 19 April 2009

Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia.
Akalin, A. and Garrett-Bakelman, F.E. and Kormaksson, M. and Busuttil, J. and Zhang, L. and Khrebtukova, I. and Milne, T.A. and Huang, Y. and Biswas, D. and Hess, J.L. and Allis, C.D. and Roeder, R.G. and Valk, P.J.M. and Loewenberg, B. and Delwel, R. and Fernandez, H.F. and Paietta, E. and Tallman, M.S. and Schroth, G.P. and Mason, C.E. and Melnick, A. and Figueroa, M.E.
PLoS Genetics 8 (6): e1002781. 21 June 2012

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.
Akalin, A. and Kormaksson, M. and Li, S. and Garrett-Bakelman, F.E. and Figueroa, M.E. and Melnick, A. and Mason, C.E.
Genome Biology 13 (10): R87. 3 October 2012

genomation: a toolkit to summarize, annotate and visualize genomic intervals.
Akalin, A. and Franke, V. and Vlahoviček, K. and Mason, C.E. and Schübeler, D.
Bioinformatics 31 (7): 1127-1129. 1 April 2015

Acquired resistance to DZNep-mediated apoptosis is associated with copy number gains of AHCY in a B-cell lymphoma model.
Akpa, C.A. and Kleo, K. and Oker, E. and Tomaszewski, N. and Messerschmidt, C. and López, C. and Wagener, R. and Oehl-Huber, K. and Dettmer, K. and Schoeler, A. and Lenze, D. and Oefner, P.J. and Beule, D. and Siebert, R. and Capper, D. and Dimitrova, L. and Hummel, M.
BMC Cancer 20 (1): 427. 14 May 2020

Late diagnosis of a truncating WISP3 mutation entails a severe phenotype of progressive pseudorheumatoid dysplasia.
Alawbathani, S. and Kawalia, A. and Karakaya, M. and Altmüller, J. and Nürnberg, P. and Cirak, S.
Cold Spring Harbor Molecular Case Studies 4 (1): a002139. 19 December 2017

MYCN mediates cysteine addiction and sensitizes neuroblastoma to ferroptosis.
Alborzinia, H. and Flórez, A.F. and Kreth, S. and Brückner, L.M. and Yildiz, U. and Gartlgruber, M. and Odoni, D.I. and Poschet, G. and Garbowicz, K. and Shao, C. and Klein, C. and Meier, J. and Zeisberger, P. and Nadler-Holly, M. and Ziehm, M. and Paul, F. and Burhenne, J. and Bell, E. and Shaikhkarami, M. and Würth, R. and Stainczyk, S.A. and Wecht, E.M. and Kreth, J. and Büttner, M. and Ishaque, N. and Schlesner, M. and Nicke, B. and Stresemann, C. and Llamazares-Prada, M. and Reiling, J.H. and Fischer, M. and Amit, I. and Selbach, M. and Herrmann, C. and Wölfl, S. and Henrich, K.O. and Höfer, T. and Trumpp, A. and Westermann, F.
Nature Cancer 3 (4): 471-485. 28 April 2022

Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids.
Alcala, N. and Leblay, N. and Gabriel, A.A.G. and Mangiante, L. and Hervas, D. and Giffon, T. and Sertier, A.S. and Ferrari, A. and Derks, J. and Ghantous, A. and Delhomme, T.M. and Chabrier, A. and Cuenin, C. and Abedi-Ardekani, B. and Boland, A. and Olaso, R. and Meyer, V. and Altmuller, J. and Le Calvez-Kelm, F. and Durand, G. and Voegele, C. and Boyault, S. and Moonen, L. and Lemaitre, N. and Lorimier, P. and Toffart, A.C. and Soltermann, A. and Clement, J.H. and Saenger, J. and Field, J.K. and Brevet, M. and Blanc-Fournier, C. and Galateau-Salle, F. and Le Stang, N. and Russell, P.A. and Wright, G. and Sozzi, G. and Pastorino, U. and Lacomme, S. and Vignaud, J.M. and Hofman, V. and Hofman, P. and Brustugun, O.T. and Lund-Iversen, M. and Thomas de Montpreville, V. and Muscarella, L.A. and Graziano, P. and Popper, H. and Stojsic, J. and Deleuze, J.F. and Herceg, Z. and Viari, A. and Nuernberg, P. and Pelosi, G. and Dingemans, A.M.C. and Milione, M. and Roz, L. and Brcic, L. and Volante, M. and Papotti, M.G. and Caux, C. and Sandoval, J. and Hernandez-Vargas, H. and Brambilla, E. and Speel, E.J.M. and Girard, N. and Lantuejoul, S. and McKay, J.D. and Foll, M. and Fernandez-Cuesta, L.
Nature Communications 10 (1): 3407. 20 August 2019

Sites of transcription initiation drive mRNA isoform selection.
Alfonso-Gonzalez, C. and Legnini, I. and Holec, S. and Arrigoni, L. and Ozbulut, H.C. and Mateos, F. and Koppstein, D. and Rybak-Wolf, A. and Bönisch, U. and Rajewsky, N. and Hilgers, V.
Cell 186 (11): 2438-2455. 25 May 2023

Relationship between genome and epigenome - challenges and requirements for future research.
Almouzni, G. and Altucci, L. and Amati, B. and Ashley, N. and Baulcombe, D. and Beaujean, N. and Bock, C. and Bongcam-Rudloff, E. and Bousquet, J. and Braun, S. and Bressac-de Paillerets, B. and Bussemakers, M. and Clarke, L. and Conesa, A. and Estivill, X. and Fazeli, A. and Grgurević, N. and Gut, I. and Heijmans, B.T. and Hermouet, S. and Houwing-Duistermaat, J. and Iacobucci, I. and Ilaš, J. and Kandimalla, R. and Krauss-Etschmann, S. and Lasko, P. and Lehmann, S. and Lindroth, A. and Majdič, G. and Marcotte, E. and Martinelli, G. and Martinet, N. and Meyer, E. and Miceli, C. and Mills, K. and Moreno-Villanueva, M. and Morvan, G. and Nickel, D. and Niesler, B. and Nowacki, M. and Nowak, J. and Ossowski, S. and Pelizzola, M. and Pochet, R. and Potočnik, U. and Radwanska, M. and Raes, J. and Rattray, M. and Robinson, M.D. and Roelen, B. and Sauer, S. and Schinzer, D. and Slagboom, E. and Spector, T. and Stunnenberg, H.G. and Tiligada, E. and Torres-Padilla, M.E. and Tsonaka, R. and Van Soom, A. and Vidaković, M. and Widschwendter, M.
BMC Genomics 15 : 487. 18 June 2014

DNA sonication inverse PCR for genome scale analysis of uncharacterized flanking sequences.
Alquezar‐Planas, D.E. and Löber, U. and Cui, P. and Quedenau, C. and Chen, W. and Greenwood, A.D.
Methods in Ecology and Evolution 22 September 2020

A palladium-catalyzed domino reaction to access 3-amino-2H-indazoles from hydrazines and 2-halobenzonitriles.
Alsalim, R. and Lindemann, P. and López-Alberca, M.P. and Miksche, S. and Czechtizky, W. and Halland, N. and Nazaré, M.
Organic Letters 22 (18): 7393-7396. 18 September 2020

The immunoproteasome-specific inhibitor ONX 0914 reverses susceptibility to acute viral myocarditis.
Althof, N. and Goetzke, C.C. and Kespohl, M. and Voss, K. and Heuser, A. and Pinkert, S. and Kaya, Z. and Klingel, K. and Beling, A.
EMBO Molecular Medicine 10 (2): 200-218. 1 February 2018

Predicting the binding affinity of MHC class II peptides.
Altiparmak, F. and Akalin, A. and Ferhatosmanoglu, H.
Computational Systems Bioinformatics 2006 : 331-334. August 2006

Mutational profiling in the peripheral blood leukocytes of patients with systemic mast cell activation syndrome using next-generation sequencing.
Altmüller, J. and Haenisch, B. and Kawalia, A. and Menzen, M. and Nöthen, M.M. and Fier, H. and Molderings, G.J.
Immunogenetics 69 (6): 359-369. June 2017

A systematic comparison of two new releases of exome sequencing products: the aim of use determines the choice of product.
Altmüller, J. and Motameny, S. and Becker, C. and Thiele, H. and Chatterjee, S. and Wollnik, B. and Nürnberg, P.
Biological Chemistry 397 (8): 791-801. 1 August 2016

Mutations in AP3D1 associated with immunodeficiency and seizures define a new type of Hermansky-Pudlak syndrome.
Ammann, S. and Schulz, A. and Krägeloh-Mann, I. and Dieckmann, N.M.G. and Niethammer, K. and Fuchs, S. and Eckl, K.M. and Plank, R. and Werner, R. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Bank, J. and Strauss, A. and von Bernuth, H. and Zur Stadt, U. and Grieve, S. and Griffiths, G.M. and Lehmberg, K. and Hennies, H.C. and Ehl, S.
Blood 127 (8): 997-1006. 25 February 2016

Retargeting transposon insertions by the adeno-associated virus Rep protein.
Ammar, I. and Gogol-Doering, A. and Miskey, C. and Chen, W. and Cathomen, T. and Izsvak, Z. and Ivics, Z.
Nucleic Acids Research 40 (14): 6693-6712. 1 August 2012

Feasibility of a culturally adapted dietary weight-loss intervention among Ghanaian migrants in Berlin, Germany: the ADAPT study.
Amoah, S. and Ennin, R. and Sagoe, K. and Steinbrecher, A. and Pischon, T. and Mockenhaupt, F.P. and Danquah, I.
International Journal of Environmental Research and Public Health 18 (2): 510. 9 January 2021

TAT-apoptosis repressor with caspase recruitment domain protein transduction rescues mice from fulminant liver failure.
An, J. and Harms, C. and Lättig-Tünnemann, G. and Sellge, G. and Mandic, A.D. and Malato, Y. and Heuser, A. and Endres, M. and Trautwein, C. and Donath, S.
Hepatology 56 (2): 715-726. August 2012

In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation.
Anania, C. and Acemel, R.D. and Jedamzick, J. and Bolondi, A. and Cova, G. and Brieske, N. and Kühn, R. and Wittler, L. and Real, F.M. and Lupiáñez, D.G.
Nature Genetics July 2022

doRiNA: a database of RNA interactions in post-transcriptional regulation.
Anders, G. and Mackowiak, S.D. and Jens, M. and Maaskola, J. and Kuntzagk, A. and Rajewsky, N. and Landthaler, M. and Dieterich, C.
Nucleic Acids Research 40 (1): D180-D186. January 2012

Furin-, ADAM 10-, and γ-secretase-mediated cleavage of a receptor tyrosine phosphatase and regulation of β-catenin's transcriptional activity.
Anders, L. and Mertins, P. and Lammich, S. and Murgia, M. and Hartmann, D. and Saftig, P. and Haass, C. and Ullrich, A.
Molecular and Cellular Biology 26 (10): 3917-3934. May 2006

Automated genome sequence analysis and annotation.
Andrade, M.A. and Brown, N.P. and Leroy, C. and Hoersch, S. and de Daruvar, A. and Reich, C. and Franchini, A. and Tamames, J. and Valencia, A. and Ouzounis, C. and Sander, C.
Bioinformatics 15 (5): 391-412. May 1999

Putative mobilized colistin resistance genes in the human gut microbiome.
Andrade, B.G.N. and Goris, T. and Afli, H. and Coutinho, F.H. and Dávila, A.M.R. and Cuadrat, R.R.C.
BMC Microbiology 21 : 220. 22 July 2021

Mitochondrial vesicles: an ancient process providing new links to peroxisomes.
Andrade-Navarro, M.A. and Sanchez-Pulido, L. and McBride, H.M.
Current Opinion in Cell Biology 21 (4): 560-567. August 2009

Enhanced efficiency through nuclear localization signal fusion on phage PhiC31-integrase: activity comparison with Cre and FLPe recombinase in mammalian cells.
Andreas, S. and Schwenk, F. and Kueter-Luks, B. and Faust, N. and Kühn, R.
Nucleic Acids Research 30 (11): 2299-2306. 1 June 2002

De novo whole genome assembly of the Roborovski dwarf hamster (Phodopus roborovskii) genome, an animal model for severe/critical COVID-19.
Andreotti, S. and Altmüller, J. and Quedenau, C. and Borodina, T. and Nouailles, G. and Teixeira Alves, L.G. and Landthaler, M. and Bieniara, M. and Trimpert, J. and Wyler, E.
Genome Biology and Evolution 14 (7): evac100. July 2022

High-resolution intravital microscopy.
Andresen, V. and Pollok, K. and Rinnenthal, J.L. and Oehme, L. and Guenther, R. and Spiecker, H. and Radbruch, H. and Gerhard, J. and Sporbert, A. and Cseresnyes, Z. and Hauser, A.E. and Niesner, R.
PLoS ONE 7 (12): e50915. 14 December 2012

Floral induction in Arabidopsis by FLOWERING LOCUS T requires direct repression of BLADE-ON-PETIOLE genes by the homeodomain protein PENNYWISE.
Andrés, F. and Romera-Branchat, M. and Martínez-Gallegos, R. and Patel, V. and Schneeberger, K. and Jang, S. and Altmüller, J. and Nürnberg, P. and Coupland, G.
Plant Physiology 169 (3): 2187-2199. November 2015

Two deubiquitylases act on mitofusin and regulate mitochondrial fusion along independent pathways.
Anton, F. and Dittmar, G. and Langer, T. and Escobar-Henriques, M.
Molecular Cell 49 (3): 487-498. 7 February 2013

Discovery of a novel series of tankyrase inhibitors by a hybridization approach.
Anumala, U.R. and Waaler, J. and Nkizinkiko, Y. and Ignatev, A. and Lazarow, K. and Lindemann, P. and Olsen, P.A. and Murthy, S. and Obaji, E. and Majouga, A.G. and Leonov, S. and von Kries, J.P. and Lehtiö, L. and Krauss, S. and Nazaré, M.
Journal of Medicinal Chemistry 60 (24): 10013-10025. 28 December 2017

The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators.
Appel, L.M. and Franke, V. and Benedum, J. and Grishkovskaya, I. and Strobl, X. and Polyansky, A. and Ammann, G. and Platzer, S. and Neudolt, A. and Wunder, A. and Walch, L. and Kaiser, S. and Zagrovic, B. and Djinovic-Carugo, K. and Akalin, A. and Slade, D.
Nature Communications 14 (1): 166. 11 January 2023

PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.
Appel, L.M. and Franke, V. and Bruno, M. and Grishkovskaya, I. and Kasiliauskaite, A. and Kaufmann, T. and Schoeberl, U.E. and Puchinger, M.G. and Kostrhon, S. and Ebenwaldner, C. and Sebesta, M. and Beltzung, E. and Mechtler, K. and Lin, G. and Vlasova, A. and Leeb, M. and Pavri, R. and Stark, A. and Akalin, A. and Stefl, R. and Bernecky, C. and Djinovic-Carugo, K. and Slade, D.
Nature Communications 12 (1): 6078. 19 October 2021

Proteomics, post-translational modifications, and integrative analyses reveal molecular heterogeneity within medulloblastoma subgroups.
Archer, T.C. and Ehrenberger, T. and Mundt, F. and Gold, M.P. and Krug, K. and Mah, C.K. and Mahoney, E.L. and Daniel, C.J. and LeNail, A. and Ramamoorthy, D. and Mertins, P. and Mani, D.R. and Zhang, H. and Gillette, M.A. and Clauser, K. and Noble, M. and Tang, L.C. and Pierre-François, J. and Silterra, J. and Jensen, J. and Tamayo, P. and Korshunov, A. and Pfister, S.M. and Kool, M. and Northcott, P.A. and Sears, R.C. and Lipton, J.O. and Carr, S.A. and Mesirov, J.P. and Pomeroy, S.L. and Fraenkel, E.
Cancer Cell 34 (3): 396-410. 10 September 2018

Allosteric inhibition of a mammalian lectin.
Aretz, J. and Anumala, U.R. and Fuchsberger, F.F. and Molavi, N. and Ziebart, N. and Zhang, H. and Nazaré, M. and Rademacher, C.
Journal of the American Chemical Society 140 (44): 14915-14925. 7 November 2018

Inhibiting PHGDH with NCT-503 reroutes glucose-derived carbons into the TCA cycle, independently of its on-target effect.
Arlt, B. and Mastrobuoni, G. and Wuenschel, J. and Astrahantseff, K. and Eggert, A. and Kempa, S. and Deubzer, H.E.
Journal of Enzyme Inhibition and Medicinal Chemistry 36 (1): 1282-1289. 30 June 2021

Inhibiting phosphoglycerate dehydrogenase counteracts chemotherapeutic efficacy against MYCN-amplified neuroblastoma.
Arlt, B. and Zasada, C. and Baum, K. and Wuenschel, J. and Mastrobuoni, G. and Lodrini, M. and Astrahantseff, K. and Winkler, A. and Schulte, J.H. and Finkler, S. and Forbes, M. and Hundsdoerfer, P. and Guergen, D. and Hoffmann, J. and Wolf, J. and Eggert, A. and Kempa, S. and Deubzer, H.E.
International Journal of Cancer 148 (5): 1219-1232. 1 March 2021

Quantification of transients using empirical orthogonal functions.
Arndt, J. and Herzel, H. and Bose, S. and Falcke, M. and Scholl, E.
Chaos Solitons & Fractals 8 (12): 1911-1920. December 1997

SNT: a unifying toolbox for quantification of neuronal anatomy.
Arshadi, C. and Günther, U. and Eddison, M. and Harrington, K.I.S. and Ferreira, T.A.
Nature Methods 18 : 374-377. April 2021

Regulation of influenza a virus mRNA splicing by CLK1.
Artarini, A. and Meyer, M. and Shin, Y.J. and Huber, K. and Hilz, N. and Bracher, F. and Eros, D. and Orfi, L. and Keri, G. and Goedert, S. and Neuenschwander, M. and von Kries, J. and Domovich-Eisenberg, Y. and Dekel, N. and Szabadkai, I. and Lebendiker, M. and Horváth, Z. and Danieli, T. and Livnah, O. and Moncorgé, O. and Frise, R. and Barclay, W. and Meyer, T.F. and Karlas, A.
Antiviral Research 168 : 187-196. August 2019

LABKIT: labeling and segmentation toolkit for big image data.
Arzt, M. and Deschamps, J. and Schmied, C. and Pietzsch, T. and Schmidt, D. and Tomancak, P. and Haase, R. and Jug, F.
Frontiers in Computer Science 4 : 777728. 10 February 2022

A Canadian genome-wide association study and meta-analysis confirm HLA as a risk factor for peanut allergy independent of asthma.
Asai, Y. and Eslami, A. and van Ginkel, C.D. and Akhabir, L. and Wan, M. and Yin, D. and Ellis, G. and Ben-Shoshan, M. and Marenholz, I. and Martino, D. and Ferreira, M.A. and Allen, K. and Mazer, B. and de Groot, H. and de Jong, N.W. and Gerth van Wijk, R. and Dubois, A.E.J. and Grosche, S. and Ashley, S. and Rüschendorf, F. and Kalb, B. and Beyer, K. and Nöthen, M.M. and Lee, Y.A. and Chin, R. and Cheuk, S. and Hoffman, J. and Jorgensen, E. and Witte, J.S. and Melles, R.B. and Hong, X. and Wang, X. and Hui, J. and Musk, A.W.B. and Hunter, M. and James, A.L. and Koppelman, G.H. and Sandford, A.J. and Clarke, A.E. and Daley, D.
Journal of Allergy and Clinical Immunology 141 (4): 1513-1516. April 2018

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients.
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Copy number increases of transposable elements and protein-coding genes in an invasive fish of hybrid origin.
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Genome-wide patterns of transposon proliferation in an evolutionary young hybrid fish.
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Nuclear organization in the spinal cord depends on motor neuron lamination orchestrated by catenin and afadin function.
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Differential mRNA distribution of components of the ERK/MAPK signalling cascade in the adult mouse brain.
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N-desalkylquetiapine activates ERK1/2 to induce GDNF release in C6 glioma cells: a putative cellular mechanism for quetiapine as antidepressant.
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Local knockdown of ERK2 in the adult mouse brain via adeno-associated virus-mediated RNA interference.
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RNA-sequencing and somatic mutation status of adrenocortical tumors: novel pathogenetic insights.
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Update on the ACTG1-associated Baraitser–Winter cerebrofrontofacial syndrome.
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American Journal of Medical Genetics Part A 170 (10): 2644-2651. October 2016

Mutations in EXOSC2 are associated with a novel syndrome characterised by retinitis pigmentosa, progressive hearing loss, premature ageing, short stature, mild intellectual disability and distinctive gestalt.
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A comparison of solvent-based extraction methods to assess the central carbon metabolites in mouse bone and muscle.
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Complement is activated by IgG hexamers assembled at the cell surface.
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Science 343 (6176): 1260-3. 14 March 2014

From tube to structure: SPA Cryo-EM workflow using apoferritin as an example.
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Conical Fourier shell correlation applied to electron tomograms.
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Cryoelectron tomography of the NAIP5/NLRC4 inflammasome: implications for NLR activation.
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Second generation codon optimized minicircle (CoMiC) for nonviral reprogramming of human adult fibroblasts.
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Susceptibility to diet-induced obesity at thermoneutral conditions is independent of UCP1.
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Design, construction, and evaluation of a dynamic MR compatible cardiac left ventricle model.
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Design and application of a four-channel transmit/receive surface coil for functional cardiac imaging at 7T.
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Annotating regulatory DNA based on man-mouse genomic comparison.
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Bioinformatics 18 (Suppl 2): S84-S90. 2002

Comparative promoter region analysis powered by CORG.
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BMC Genomics 6 (1): 24. 2005

Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
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Bioinformatics 19 (Suppl 2): ii50-ii56. October 2003

Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
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Bioinformatics 20 (Suppl 1): i109-i115. 4 August 2004

In vitro reconstructed human epithelia reveal contributions of Candida albicans EFG1 and CPH1 to adhesion and invasion.
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Microbiology 148 (Pt 2): 497-506. February 2002

CORG: a database for COmparative Regulatory Genomics.
Dieterich, C. and Wang, H. and Rateitschak, K. and Luz, H. and Vingron, M.
Nucleic Acids Research 31 (1): 55-57. 2003

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism.
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Developments in CORG: a gene-centric comparative genomics resource.
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Nucleic Acids Research 35 (Database issue): D32-D35. January 2007

Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus.
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Nucleic Acids Research 35 (Database issue): D498-D502. January 2007

A Caenorhabditis motif compendium for studying transcriptional gene regulation.
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Comparative promoter analysis in vertebrate genomes with the CORG workbench.
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Status of the neonatal rat brain after NMDA-induced excitotoxic injury as measured by MRI, MRS and metabolic imaging.
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NMR in Biomedicine 9 (2): 84-92. April 1996

Old discovery leading to new era: metabolic imaging of cancer with Deuterium MRI.
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Magnetochemistry 9 (1): 6. January 2023

T- and L-type calcium channels maintain calcium oscillations in the murine zona glomerulosa.
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Hypertension 81 (4): 811-822. April 2024

Claudin peptidomimetics modulate tissue barriers for enhanced drug delivery.
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Annals of the New York Academy of Sciences 1397 (1): 169-184. June 2017

PRISMA: Protein Interaction Screen on Peptide Matrix reveals interaction footprints and modifications- dependent interactome of intrinsically disordered C/EBPb.
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Role of a ubiquitin-like modification in polarized morphogenesis.
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Science 295 : 2442-2446. 29 March 2002

Laminar shear stress inhibits endothelial cell metabolism via KLF2-mediated repression of PFKFB3.
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FLEXBAR: flexible barcode and adapter processing for next-generation sequencing platforms.
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Biology 1 (3): 895-905. 14 December 2012

Identifying tumor cells at the single-cell level using machine learning.
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Genome Biology 23 (1): 123. 30 May 2022

On the relation between filament density, force generation and protrusion rate in mesenchymal cell motility.
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Molecular Biology of the Cell 29 (22): 2674-2686. 1 November 2018

Translog, a web browser for studying the expression divergence of homologous genes.
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BMC Bioinformatics 11 (Suppl 1): S59. 18 January 2010

Therapeutic targeting of ATR in alveolar rhabdomyosarcoma.
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Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance.
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Increase in mental disorders during the COVID-19 pandemic -- the role of occupational and financial strains. An analysis of the German National Cohort (NAKO) Study.
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Temporal and regional changes during focal ischemia in rat brain studied by proton spectroscopic imaging and quantitative diffusion NMR imaging.
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Impaired myocardial development resulting in neonatal cardiac hypoplasia alters postnatal growth and stress response in the heart.
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Germline C1GALT1C1 mutation causes a multisystem chaperonopathy.
Erger, F. and Aryal, R.P. and Reusch, B. and Matsumoto, Y. and Meyer, R. and Zeng, J. and Knopp, C. and Noel, M. and Muerner, L. and Wenzel, A. and Kohl, S. and Tschernoster, N. and Rappl, G. and Rouvet, I. and Schröder-Braunstein, J. and Seibert, F.S. and Thiele, H. and Häusler, M.G. and Weber, L.T. and Büttner-Herold, M. and Elbracht, M. and Cummings, S.F. and Altmüller, J. and Habbig, S. and Cummings, R.D. and Beck, B.B.
Proceedings of the National Academy of Sciences of the United States of America 120 (22): e2211087120. 30 May 2023

cfNOMe - a single assay for comprehensive epigenetic analyses of cell-free DNA.
Erger, F. and Nörling, D. and Borchert, D. and Leenen, E. and Habbig, S. and Wiesener, M.S. and Bartram, M.P. and Wenzel, A. and Becker, C. and Toliat, M.R. and Nürnberg, P. and Beck, B.B. and Altmüller, J.
Genome Medicine 12 (1): 54. 24 June 2020

Ultra-fast low-angle rapid acquisition and relaxation enhancement (UFLARE) in patients with epilepsy.
Eriksson, S.H. and Stepney, A. and Symms, M.R. and Woermann, F.G. and Niendorf, T. and Barker, G.J. and Kendall, B. and Stevens, J.M.
Neuroradiology 43 (12): 1040-1045. December 2001

Transposable elements and introgression introduce genetic variation in the invasive ant Cardiocondyla obscurior.
Errbii, M. and Keilwagen, J. and Hoff, K.J. and Steffen, R. and Altmüller, J. and Oettler, J. and Schrader, L.
Molecular Ecology 30 (23): 6211-6228. December 2021

Base editing repairs an SGCA mutation in human primary muscle stem cells.
Escobar, H. and Krause, A. and Keiper, S. and Kieshauer, J. and Müthel, S. and García de Paredes, M. and Metzler, E. and Kühn, R. and Heyd, F. and Spuler, S.
JCI Insight 6 (10): e145994. 24 May 2021