Finding optimal sets of enriched regions in chip-seq data

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Item Type:	Article
Title:	Finding optimal sets of enriched regions in chip-seq data
Creators:	Gogol-Doering, A. ORCID: https://orcid.org/0009-0001-7697-0551 and Chen, W. ORCID: https://orcid.org/0000-0003-3263-1627
Abstract:	The main challenge when analyzing ChIP-Seq data is the identification of DNA-protein binding sites by finding genomic regions that are enriched with sequencing reads. We present a new tool called qips especially suited for processing ChIP-Seq data containing broader enriched regions. Our tool certainly finds all enriched regions that are not exceeded by higher significant alternatives.
Source:	Lecture Notes in Informatics
Series Name:	Lecture Notes in Informatics (LNI) - Proceedings
Title of Book:	German Conference on Bioinformatics 2010
ISSN:	1617-5468
ISBN:	978-3-88579-267-3
Publisher:	Gesellschaft für Informatik
Volume:	P-173
Page Range:	113-121
Date:	2010
Official Publication:	http://subs.emis.de/LNI/Proceedings/Proceedings173/article5794.html

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