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2023

An unconventional gatekeeper mutation sensitizes inositol hexakisphosphate kinases to an allosteric inhibitor.
Aguirre, T. and Hostachy, S. and Dornan, G.L. and Neuenschwander, M. and Seyffarth, C. and Haucke, V. and Schütz, A. and von Kries, J.P. and Fiedler, D.
eLife 22 June 2023 (In Press)

The interleukin-11 receptor variant p.W307R results in craniosynostosis in humans.
Ahmad, I. and Lokau, J. and Kespohl, B. and Malik, N.A. and Baig, S.M. and Hartig, R. and Behme, D. and Schwab, R. and Altmüller, J. and Jameel, M. and Mucha, S. and Thiele, H. and Tariq, M. and Nürnberg, P. and Erdmann, J. and Garbers, C.
Scientific Reports 13 (1): 13479. 18 August 2023

The FGFR inhibitor PD173074 binds to the C-terminus of oncofetal HMGA2 and modulates its DNA-binding and transcriptional activation functions.
Ahmed, S.M. and Ragunathan, P. and Shin, J. and Peter, S. and Kleissle, S. and Neuenschwander, M. and Schäfer, R. and von Kries, J.P. and Grüber, G. and Dröge, P.
FEBS Letters 597 (15): 1977-1988. August 2023

Sites of transcription initiation drive mRNA isoform selection.
Alfonso-Gonzalez, C. and Legnini, I. and Holec, S. and Arrigoni, L. and Ozbulut, H.C. and Mateos, F. and Koppstein, D. and Rybak-Wolf, A. and Bönisch, U. and Rajewsky, N. and Hilgers, V.
Cell 186 (11): 2438-2455. 25 May 2023

The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators.
Appel, L.M. and Franke, V. and Benedum, J. and Grishkovskaya, I. and Strobl, X. and Polyansky, A. and Ammann, G. and Platzer, S. and Neudolt, A. and Wunder, A. and Walch, L. and Kaiser, S. and Zagrovic, B. and Djinovic-Carugo, K. and Akalin, A. and Slade, D.
Nature Communications 14 (1): 166. 11 January 2023

Expanding the spectrum of EEF1D neurodevelopmental disorders: biallelic variants in the guanine exchange domain.
Averdunk, L. and Al-Thihli, K. and Surowy, H. and Lüdecke, H.J. and Drechsler, M. and Yigit, G. and Smorag, L. and Hallak, B.A. and Li, Y. and Altmüller, J. and Guthoff, T. and Wallot, M. and Nürnberg, P. and Wollnik, B. and Abou Jamra, R. and Al-Maawali, A. and Wieczorek, D.
Clinical Genetics 103 (4): 484-491. April 2023

Quantifying the impact of gut microbiota on inflammation and hypertensive organ damage.
Avery, E.G. and Bartolomaeus, H. and Rauch, A. and Chen, C.Y. and N'Diaye, G. and Löber, U. and Bartolomaeus, T.U.P. and Fritsche-Guenther, R. and Rodrigues, A.F. and Yarritu, A. and Zhong, C. and Fei, L. and Tsvetkov, D. and Todiras, M. and Park, J.K. and Markó, L. and Maifeld, A. and Patzak, A. and Bader, M. and Kempa, S. and Kirwan, J.A. and Forslund, S.K. and Müller, D.N. and Wilck, N.
Cardiovascular Research 119 (6): 1441-1452. May 2023

Immune phenotypes and checkpoint molecule expression of clonally expanded lymph node-infiltrating T cells in classical Hodgkin lymphoma.
Ballhausen, A. and Ben Hamza, A. and Welters, C. and Dietze, K. and Bullinger, L. and Rahn, H.P. and Hartmann, S. and Hansmann, M.L. and Hansmann, L.
Cancer Immunology Immunotherapy 72 (2): 515-521. February 2023

Renal MRI: from nephron to NMR signal.
Bane, O. and Seeliger, E. and Cox, E. and Stabinska, J. and Bechler, E. and Lewis, S. and Hickson, L.T.J. and Francis, S. and Sigmund, E. and Niendorf, T.
Journal of Magnetic Resonance Imaging 26 May 2023 (In Press)

MRI of implantation sites using parallel transmission of an optimized radiofrequency excitation vector.
Berangi, M. and Kuehne, A. and Waiczies, H. and Niendorf, T.
Tomography 9 (2): 603-620. 8 March 2023

The methylation inhibitor 3DZNep promotes HDR pathway choice during CRISPR-Cas9 genome editing.
Bischoff, N. and Wimberger, S. and Kuehn, R. and Laugesen, A. and Turan, V. and Larsen, B.D. and Sørensen, C.S. and Helin, K. and Bennett, E.P. and Maresca, M. and Brakebusch, C.
Gene and Genome Editing 5 : 100023. June 2023

A proteomics analysis of 5xFAD mouse brain regions reveals the lysosome-associated protein Arl8b as a candidate biomarker for Alzheimer's disease.
Boeddrich, A. and Haenig, C. and Neuendorf, N. and Blanc, E. and Ivanov, A. and Kirchner, M. and Schleumann, P. and Bayraktaroğlu, I. and Richter, M. and Molenda, C.M. and Sporbert, A. and Zenkner, M. and Schnoegl, S. and Suenkel, C. and Schneider, L.S. and Rybak-Wolf, A. and Kochnowsky, B. and Byrne, L.M. and Wild, E.J. and Nielsen, J.E. and Dittmar, G. and Peters, O. and Beule, D. and Wanker, E.E.
Genome Medicine 15 (1): 50. 20 July 2023

Frequent ZNF217 mutations lead to transcriptional deregulation of interferon signal transduction via altered chromatin accessibility in B cell lymphoma.
Briest, F. and Noerenberg, D. and Hennch, C. and Yoshida, K. and Hablesreiter, R. and Nimo, J. and Sasca, D. and Kirchner, M. and Mansouri, L. and Inoue, Y. and Wiegand, L. and Staiger, A.M. and Casadei, B. and Korkolopoulou, P. and Weiner, J. and Lopez-Guillermo, A. and Warth, A. and Schneider, T. and Nagy, Á. and Klapper, W. and Hummel, M. and Kanellis, G. and Anagnostopoulos, I. and Mertins, P. and Bullinger, L. and Rosenquist, R. and Vassilakopoulos, T.P. and Ott, G. and Ogawa, S. and Damm, F.
Leukemia 30 August 2023 (In Press)

LRP2 contributes to planar cell polarity-dependent coordination of motile cilia function.
Bunatyan, L. and Margineanu, A. and Boutin, C. and Montcouquiol, M. and Bachmann, S. and Christensen, E.I. and Willnow, T.E. and Christ, A.
Cell and Tissue Research 392 (2): 535-551. May 2023

LZTR1 polymerization provokes cardiac pathology in recessive Noonan syndrome.
Busley, A.V. and Gutiérrez-Gutiérrez, O. and Hammer, E. and Steinegger, M. and Böhmer, L. and Schroeder, H. and Kleinsorge, M. and Altmüller, J. and Marbach, F. and Hasenfuss, G. and Zimmermann, W.H. and Wollnik, B. and Cyganek, L.
bioRxiv : 2023.01.10.523203. 10 January 2023

Monitoring kidney size to interpret MRI-based assessment of renal oxygenation in acute pathophysiological scenarios.
Cantow, K. and Gladytz, T. and Millward, J.M. and Waiczies, S. and Niendorf, T. and Seeliger, E.
Acta Physiologica 237 (2): e13868. February 2023

Parallel sequencing of extrachromosomal circular DNAs and transcriptomes in single cancer cells.
Chamorro González, R. and Conrad, T. and Stöber, M.C. and Xu, R. and Giurgiu, M. and Rodriguez-Fos, E. and Kasack, K. and Brückner, L. and van Leen, E. and Helmsauer, K. and Dorado Garcia, H. and Stefanova, M.E. and Hung, K.L. and Bei, Y. and Schmelz, K. and Lodrini, M. and Mundlos, S. and Chang, H.Y. and Deubzer, H.E. and Sauer, S. and Eggert, A. and Schulte, J.H. and Schwarz, R.F. and Haase, K. and Koche, R.P. and Henssen, A.G.
Nature Genetics 55 (5): 880-890. May 2023

Genome-wide screening reveals the genetic basis of mammalian embryonic eye development.
Chee, J.M. and Lanoue, L. and Clary, D. and Higgins, K. and Bower, L. and Flenniken, A. and Guo, R. and Adams, D.J. and Bosch, F. and Braun, R.E. and Brown, S.D.M. and Chin, H.J.G. and Dickinson, M.E. and Hsu, C.W. and Dobbie, M. and Gao, X. and Galande, S. and Grobler, A. and Heaney, J.D. and Herault, Y. and de Angelis, M.H. and Mammano, F. and Nutter, L.M.J and Parkinson, H. and Qin, C. and Shiroishi, T. and Sedlacek, R. and Seong, J.K. and Xu, Y. and Brooks, B. and McKerlie, C. and Lloyd, K.C.K. and Westerberg, H. and Moshiri, A.
BMC Biology 21 (1): 22. 3 February 2023

Association of the human gut microbiota with vascular stiffness.
Cuadrat, R.R.C. and Goris, T. and Birukov, A. and Eichelmann, F. and Andrade, B.G.N. and Bang, C. and Franke, A. and Wittenbecher, C. and Schulze, M.B.
Scientific Reports 13 (1): 13348. 16 August 2023

Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation.
Cuadrat, R.R.C. and Kratzer, A. and Arnal, H.G. and Rathgeber, A.C. and Wreczycka, K. and Blume, A. and Gündüz, I.B. and Ebenal, V. and Mauno, T. and Osberg, B. and Moobed, M. and Hartung, J. and Jakobs, K. and Seppelt, C. and Meteva, D. and Haghikia, A. and Leistner, D.M. and Landmesser, Ulf and Akalin, A.
NAR Genomics and Bioinformatics 5 (2): lqad061. June 2023

Bioactive phytochemicals from avocado oil processing by-products.
Cárdenas-Castro, A.P. and Fernández-Ochoa, Á. and Cádiz-Gurrea, M.d.l.L. and Segura Carretero, A. and Sáyago-Ayerdi, S.G.
In: Bioactive phytochemicals from vegetable oil and oilseed processing by-products. Reference Series in Phytochemistry, 1 . Springer, Cham, Switzerland, 403-430. ISBN 978-3-030-91380-9 22 March 2023

Old discovery leading to new era: metabolic imaging of cancer with Deuterium MRI.
Ding, H. and Haroon, A. and Wan, S. and Niendorf, T. and Adeleke, S.
Magnetochemistry 9 (1): 6. January 2023

Germline C1GALT1C1 mutation causes a multisystem chaperonopathy.
Erger, F. and Aryal, R.P. and Reusch, B. and Matsumoto, Y. and Meyer, R. and Zeng, J. and Knopp, C. and Noel, M. and Muerner, L. and Wenzel, A. and Kohl, S. and Tschernoster, N. and Rappl, G. and Rouvet, I. and Schröder-Braunstein, J. and Seibert, F.S. and Thiele, H. and Häusler, M.G. and Weber, L.T. and Büttner-Herold, M. and Elbracht, M. and Cummings, S.F. and Altmüller, J. and Habbig, S. and Cummings, R.D. and Beck, B.B.
Proceedings of the National Academy of Sciences of the United States of America 120 (22): e2211087120. 30 May 2023

Radiofrequency induced heating of biodegradable orthopaedic screw implants during magnetic resonance imaging.
Espiritu, J. and Berangi, M. and Cwieka, H. and Iskhakova, K. and Kuehne, A. and Florian Wieland, D.C. and Zeller-Plumhoff, B. and Niendorf, T. and Willumeit-Römer, R. and Seitz, J.M.
Bioactive Materials 25 : 86-94. 23 January 2023

Spondyloarthritis, acute anterior uveitis, and Crohn's disease have both shared and distinct gut microbiota.
Essex, M. and Rios Rodriguez, V. and Rademacher, J. and Proft, F. and Löber, U. and Marko, L. and Pleyer, U. and Strowig, T. and Marchand, J. and Kirwan, J.A. and Siegmund, B. and Forslund, S.K. and Poddubnyy, D.
Arthritis & Rheumatology 20 July 2023 (In Press)

Machine learning-based ozone and PM2.5 forecasting: application to multiple AQS sites in the Pacific Northwest.
Fan, K. and Dhammapala, R. and Harrington, K. and Lamb, B. and Lee, Y.
Frontiers in Big Data 6 : 1124148. 24 February 2023

Metabolic syndrome and the risk of postoperative delirium and postoperative cognitive dysfunction: a multi-centre cohort study.
Feinkohl, I. and Janke, J. and Slooter, A.J.C. and Winterer, G. and Spies, C. and Pischon, T.
British Journal of Anaesthesia 131 (2): 338-347. August 2023

Identification of radiomic biomarkers in a set of four skeletal muscle groups on Dixon MRI of the NAKO MR study.
Fischer, M. and Küstner, T. and Pappa, S. and Niendorf, T. and Pischon, T. and Kröncke, T. and Bette, S. and Schramm, S. and Schmidt, B. and Haubold, J. and Nensa, F. and Nonnenmacher, T. and Palm, V. and Bamberg, F. and Kiefer, L. and Schick, F. and Yang, B.
BMC Medical Imaging 23 (1): 104. 8 August 2023

Potential contribution of ancient introgression to the evolution of a derived reproductive strategy in ricefishes.
Flury, J.M. and Meusemann, K. and Martin, S. and Hilgers, L. and Spanke, T. and Böhne, A. and Herder, F. and Mokodongan, D. and Altmüller, J. and Wowor, D. and Misof, B. and Nolte, A.W. and Schwarzer, J.
Genome Biology and Evolution 15 (8): evad138. 29 August 2023

TREX1 p.A129fs and p.Y305C variants in a large multi-ethnic cohort of CADASIL-like unrelated patients.
Foddis, M. and Blumenau, S. and Holtgrewe, M. and Paquette, K. and Westra, K. and Alonso, I. and Macario, M.d.C. and Morgadinho, A.S. and Velon, A.G. and Santo, G. and Santana, I. and Mönkäre, S. and Kuuluvainen, L. and Schleutker, J. and Pöyhönen, M. and Myllykangas, L. and Pavlovic, A. and Kostic, V. and Dobricic, V. and Lohmann, E. and Hanagasi, H. and Santos, M. and Guven, G. and Bilgic, B. and Bras, J. and Beule, D. and Dirnagl, U. and Guerreiro, R. and Sassi, C.
Neurobiology of Aging 123 : 208-215. March 2023

Advancements in pulsed stable isotope-resolved metabolomics.
Forbes, M. and Geisberger, S. and Pietzke, M. and Mastrobuoni, G. and Kempa, S.
Handbook of Experimental Pharmacology 277 : 165-180. 3 March 2023

A multimorphic mutation in IRF4 causes human autosomal dominant combined immunodeficiency.
Fornes, O. and Jia, A. and Kuehn, H.S. and Min, Q. and Pannicke, U. and Schleussner, N. and Thouenon, R. and Yu, Z. and de Los Angeles Astbury, M. and Biggs, C.M. and Galicchio, M. and Garcia-Campos, J.A. and Gismondi, S. and Gonzalez Villarreal, G. and Hildebrand, K.J. and Hönig, M. and Hou, J. and Moshous, D. and Pittaluga, S. and Qian, X. and Rozmus, J. and Schulz, A.S. and Staines-Boone, A.T. and Sun, B. and Sun, J. and Uwe, S. and Venegas-Montoya, E. and Wang, W. and Wang, X. and Ying, W. and Zhai, X. and Zhou, Q. and Akalin, A. and André, I. and Barth, T.F.E. and Baumann, B. and Brüstle, A. and Burgio, G. and Bustamante, J.C. and Casanova, J.L. and Casarotto, M.G. and Cavazzana, M. and Chentout, L. and Cockburn, I.A. and Costanza, M. and Cui, C. and Daumke, O. and Del Bel, K.L. and Eibel, H. and Feng, X. and Franke, V. and Gebhardt, J.C.M. and Götz, A. and Grunwald, S. and Hoareau, B. and Hughes, T.R. and Jacobsen, E.M. and Janz, M. and Jolma, A. and Lagresle-Peyrou, C. and Lai, N. and Li, Y. and Lin, S. and Lu, H.Y. and Lugo-Reyes, S.O. and Meng, X. and Möller, P. and Moreno-Corona, N. and Niemela, J.E. and Novakovsky, G. and Perez-Caraballo, J.J. and Picard, C. and Poggi, L. and Puig-Lombardi, M.E. and Randall, K.L. and Reisser, A. and Schmitt, Y. and Seneviratne, S. and Sharma, M. and Stoddard, J. and Sundararaj, S. and Sutton, H. and Tran, L.Q. and Wang, Y. and Wasserman, W.W. and Wen, Z. and Winkler, W. and Xiong, E. and Yang, A.W.H. and Yu, M. and Zhang, L. and Zhang, H. and Zhao, Q. and Zhen, X. and Enders, A. and Kracker, S. and Martinez-Barricarte, R. and Mathas, S. and Rosenzweig, S.D. and Schwarz, K. and Turvey, S.E. and Wang, J.Y.
Science Immunology 8 (79): eade7953. January 2023

Branch point strength controls species-specific CAMK2B alternative splicing and regulates LTP.
Franz, A. and Weber, A.I. and Preußner, M. and Dimos, N. and Stumpf, A. and Ji, Y. and Moreno-Velasquez, L. and Voigt, A. and Schulz, F. and Neumann, A. and Kuropka, B. and Kuehn, R. and Urlaub, H. and Schmitz, D. and Wahl, M.C. and Heyd, F.
Life Science Alliance 6 (3): e202201826. March 2023

CAR links hypoxia signaling to improved survival after myocardial infarction.
Freiberg, F. and Thakkar, M. and Hamann, W. and Lopez Carballo, J. and Jüttner, R. and Voss, F.K. and Becher, P.M. and Westermann, D. and Tschöpe, C. and Heuser, A. and Rocks, O. and Fischer, R. and Gotthardt, M.
Experimental and Molecular Medicine 55 (3): 643-652. March 2023

Diverse but unique astrocytic phenotypes during embryonic stem cell differentiation, culturing and development.
Freitag, K. and Eede, P. and Ivanov, A. and Sterczyk, N. and Schneeberger, S. and Borodina, T. and Sauer, S. and Beule, D. and Heppner, F.L.
Communications Biology 6 (1): 40. 13 January 2023

Cesium activates the neurotransmitter receptor for glycine.
Fricke, S. and Harnau, M. and Hetsch, F. and Liu, H. and Leonhard, J. and Eylmann, A. and Knauff, P. and Sun, H. and Semtner, M. and Meier, J.C.
Frontiers in Molecular Neuroscience 16 : 1018530. 22 May 2023

Fiber-orientation independent component of R(2)* obtained from single-orientation MRI measurements in simulations and a post-mortem human optic chiasm.
Fritz, F.J. and Mordhorst, L. and Ashtarayeh, M. and Periquito, J. and Pohlmann, A. and Morawski, M. and Jaeger, C. and Niendorf, T. and Pine, K.J. and Callaghan, M.F. and Weiskopf, N. and Mohammadi, S.
Frontiers in Neuroscience 17 : 1133086. 25 August 2023

Defining the landscape of circular RNAs in neuroblastoma unveils a global suppressive function of MYCN.
Fuchs, S. and Danßmann, C. and Klironomos, F. and Winkler, A. and Fallmann, J. and Kruetzfeldt, L.M. and Szymansky, A. and Naderi, J. and Bernhart, S.H. and Grunewald, L. and Helmsauer, K. and Rodriguez-Fos, E. and Kirchner, M. and Mertins, P. and Astrahantseff, K. and Suenkel, C. and Toedling, J. and Meggetto, F. and Remke, M. and Stadler, P.F. and Hundsdoerfer, P. and Deubzer, H.E. and Künkele, A. and Lang, P. and Fuchs, J. and Henssen, A.G. and Eggert, A. and Rajewsky, N. and Hertwig, F. and Schulte, J.H.
Nature Communications 14 (1): 3936. 4 July 2023

Better together: data harmonization and cross-study analysis of abdominal MRI data from UK Biobank and the German National Cohort.
Gatidis, S. and Kart, T. and Fischer, M. and Winzeck, S. and Glocker, B. and Bai, W. and Bülow, R. and Emmel, C. and Friedrich, L. and Kauczor, H.U. and Keil, T. and Kröncke, T. and Mayer, P. and Niendorf, T. and Peters, A. and Pischon, T. and Schaarschmidt, B.M. and Schmidt, B. and Schulze, M.B. and Umutle, L. and Völzke, H. and Küstner, T. and Bamberg, F. and Schölkopf, B. and Rueckert, D.
Investigative Radiology 58 (5): 346-354. 1 May 2023

Balancing WNT signalling in early forebrain development: The role of LRP4 as a modulator of LRP6 function.
Geng, S. and Paul, F. and Kowalczyk, I. and Raimundo, S. and Sporbert, A. and Mamo, T.M. and Hammes, A.
Frontiers in Cell and Developmental Biology 11 : 1173688. 7 April 2023

"suMus," a novel digital system for arm movement metrics and muscle energy expenditure.
Gerhalter, Teresa and Müller, Christina and Maron, Elke and Thielen, Markus and Schätzl, Teresa and Mähler, A. and Schütte, T. and Boschmann, M. and Herzer, René and Spuler, S. and Gazzerro, E.
Frontiers in Physiology 14 : 1057592. 26 January 2023

A consensus protocol for functional connectivity analysis in the rat brain.
Grandjean, J. and Desrosiers-Gregoire, G. and Anckaerts, C. and Angeles-Valdez, D. and Ayad, F. and Barrière, D.A. and Blockx, I. and Bortel, A. and Broadwater, M. and Cardoso, B.M. and Célestine, M. and Chavez-Negrete, J.E. and Choi, S. and Christiaen, E. and Clavijo, P. and Colon-Perez, L. and Cramer, S. and Daniele, T. and Dempsey, E. and Diao, Y. and Doelemeyer, A. and Dopfel, D. and Dvořáková, L. and Falfán-Melgoza, C. and Fernandes, F.F. and Fowler, C.F. and Fuentes-Ibañez, A. and Garin, C.M. and Gelderman, E. and Golden, C.E.M. and Guo, C.C G. and Henckens, M.J.A.G. and Hennessy, L.A. and Herman, P. and Hofwijks, N. and Horien, C. and Ionescu, T.M. and Jones, J. and Kaesser, J. and Kim, E. and Lambers, H. and Lazari, A. and Lee, S.H. and Lillywhite, A. and Liu, Y. and Liu, Y.Y. and López-Castro, A. and López-Gil, X. and Ma, Z. and MacNicol, E. and Madularu, D. and Mandino, F. and Marciano, S. and McAuslan, M.J. and McCunn, P. and McIntosh, A. and Meng, X. and Meyer-Baese, L. and Missault, S. and Moro, F. and Naessens, D.M.P. and Nava-Gomez, L.J. and Nonaka, H. and Ortiz, J.J. and Paasonen, J. and Peeters, L.M. and Pereira, M. and Perez, P.D. and Pompilus, M. and Prior, M. and Rakhmatullin, R. and Reimann, H.M. and Reinwald, J. and Del Rio, R.T. and Rivera-Olvera, A. and Ruiz-Pérez, D. and Russo, G. and Rutten, T.J. and Ryoke, R. and Sack, M. and Salvan, P. and Sanganahalli, B.G. and Schroeter, A. and Seewoo, B.J. and Selingue, E. and Seuwen, A. and Shi, B. and Sirmpilatze, N. and Smith, J.A.B. and Smith, C. and Sobczak, F. and Stenroos, P.J. and Straathof, M. and Strobelt, S. and Sumiyoshi, A. and Takahashi, K. and Torres-García, M.E and Tudela, R. and van den Berg, M. and van der Marel, K. and van Hout, A.T.B. and Vertullo, R. and Vidal, B. and Vrooman, R.M. and Wang, V.X. and Wank, I. and Watson, D.J.G. and Yin, T. and Zhang, Y. and Zurbruegg, S. and Achard, S. and Alcauter, S. and Auer, D.P. and Barbier, E.L. and Baudewig, J. and Beckmann, C.F. and Beckmann, N. and Becq, G.J.P.C. and Blezer, E.L.A. and Bolbos, R. and Boretius, S. and Bouvard, S. and Budinger, E. and Buxbaum, J.D. and Cash, D. and Chapman, V. and Chuang, K.H. and Ciobanu, L. and Coolen, B.F. and Dalley, J.W. and Dhenain, M. and Dijkhuizen, R.M. and Esteban, O. and Faber, C. and Febo, M. and Feindel, K.W. and Forloni, G. and Fouquet, J. and Garza-Villarreal, E.A. and Gass, N. and Glennon, J.C. and Gozzi, A. and Gröhn, O. and Harkin, A. and Heerschap, A. and Helluy, X. and Herfert, K. and Heuser, A. and Homberg, J.R. and Houwing, D.J. and Hyder, F. and Ielacqua, G.D. and Jelescu, I.O. and Johansen-Berg, H. and Kaneko, G. and Kawashima, R. and Keilholz, S.D. and Keliris, G.A. and Kelly, C. and Kerskens, C. and Khokhar, J.Y. and Kind, P.C. and Langlois, J.B. and Lerch, J.P. and López-Hidalgo, M.A and Manahan-Vaughan, D. and Marchand, F. and Mars, R.B. and Marsella, G. and Micotti, E. and Muñoz-Moreno, E. and Near, J. and Niendorf, T. and Otte, W.M. and Pais-Roldán, P. and Pan, W.J. and Prado-Alcalá, R.A. and Quirarte, G.L. and Rodger, J. and Rosenow, T. and Sampaio-Baptista, C. and Sartorius, A. and Sawiak, S.J. and Scheenen, T.W.J. and Shemesh, N. and Shih, Y.Y.I. and Shmuel, A. and Soria, G. and Stoop, R. and Thompson, G.J. and Till, S.M. and Todd, N. and Van Der Linden, A. and van der Toorn, A. and van Tilborg, G.A.F and Vanhove, C. and Veltien, A. and Verhoye, M. and Wachsmuth, L. and Weber-Fahr, W. and Wenk, P. and Yu, X. and Zerbi, V. and Zhang, N. and Zhang, B.B. and Zimmer, L. and Devenyi, G.A. and Chakravarty, M.M. and Hess, A.
Nature Neuroscience 26 (4): 673-681. April 2023

Sex-specific microglia state in the neuroligin-4 knock-out mouse model of autism spectrum disorder.
Guneykaya, D. and Ugursu, B. and Logiacco, F. and Popp, O. and Feiks, M.A. and Meyer, N. and Wendt, S. and Semtner, M. and Cherif, F. and Gauthier, C. and Madore, C. and Yin, Z. and Çınar, Ö. and Arslan, T. and Gerevich, Z. and Mertins, P. and Butovsky, O. and Kettenmann, H. and Wolf, S.A.
Brain Behavior and Immunity 111 : 61-75. July 2023

Analysis of volume and topography of adipose tissue in the trunk: Results of MRI of 11,141 participants in the German National Cohort.
Haueise, T. and Schick, F. and Stefan, N. and Schlett, C.L. and Weiss, J.B. and Nattenmüller, J. and Göbel-Guéniot, K. and Norajitra, T. and Nonnenmacher, T. and Kauczor, H.U. and Maier-Hein, K.H. and Niendorf, T. and Pischon, T. and Jöckel, K.H. and Umutlu, L. and Peters, A. and Rospleszcz, S. and Kröncke, T. and Hosten, N. and Völzke, H. and Krist, L. and Willich, S.N. and Bamberg, F. and Machann, J.
Science Advances 9 (19): eadd0433. 12 May 2023

Generation of two mother-child pairs of iPSCs from maternally inherited Leigh syndrome patients with m.8993 T > G and m.9176 T > G MT-ATP6 mutations.
Henke, M.T. and Zink, A. and Diecke, S. and Prigione, A. and Schuelke, M.
Stem Cell Research 67 : 103030. March 2023

Accelerated simultaneous T2 and T2* mapping of multiple sclerosis lesions using compressed sensing reconstruction of radial RARE-EPI MRI.
Herrmann, C.J.J. and Starke, L. and Millward, J.M. and Kuchling, J. and Paul, F. and Niendorf, T.
Tomography 9 (1): 299-314. 31 January 2023

SUMOylation inhibition overcomes proteasome inhibitor resistance in multiple myeloma.
Heynen, G.J.J.E. and Baumgartner, F. and Heider, M. and Patra, U. and Holz, M. and Braune, J. and Kaiser, M. and Schäffer, I. and Bamopoulos, S.A. and Ramberger, E. and Murgai, A. and Ng, Y.L.D. and Demel, U.M. and Laue, D. and Liebig, S. and Krüger, J. and Janz, M. and Nogai, A. and Schick, M. and Mertins, P. and Müller, S. and Bassermann, F. and Krönke, J. and Keller, U. and Wirth, M.
Blood Advances 7 (4): 469-481. 28 February 2023

In vitro fertilization (IVF) program in white rhinoceros.
Hildebrandt, T.B. and Holtze, S. and Colleoni, S. and Hermes, R. and Stejskal, J. and Lekolool, I. and Ndereeh, D. and Omondi, P. and Kariuki, L. and Mijele, D. and Mutisya, S. and Ngulu, S. and Diecke, S. and Hayashi, K. and Lazzari, G. and de Mori, B. and Biasetti, P. and Quaggio, A. and Galli, C. and Goeritz, F.
Reproduction 1 September 2023 (In Press)

A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish.
Huljev, K. and Shamipour, S. and Pinheiro, D. and Preusser, F. and Steccari, I. and Sommer, C.M. and Naik, S. and Heisenberg, C.P.
Developmental Cell 58 (7): 582-596.e7. 10 April 2023

Response to: Correspondence on 'H3.3K27M mutation is not a suitable target for immunotherapy in HLA-A2+ patients with diffuse midline glioma' by Chheda et al.
Immisch, L. and Papafotiou, G. and Popp, O. and Mertins, P. and Blankenstein, T. and Willimsky, G.
Journal for ImmunoTherapy of Cancer 11 (3): e006784. 14 March 2023

Oncogenic role and target properties of the lysine-specific demethylase KDM1A in chronic lymphocytic leukemia.
Jiang, Q. and Stachelscheid, J. and Bloehdorn, J. and Pacholewska, A. and Aszyk, C.M. and Grotenhuijs, F. and Müller, T.A. and Onder, O. and Wagle, P. and Herling, C.D. and Kleppe, M. and Wang, Z. and Coombes, K.R. and Robrecht, S. and Dalvi, P.S. and Plosnita, B. and Mayer, P. and Abruzzo, L.V. and Altmüller, J. and Gathof, B.S. and Persigehl, T. and Fischer, K. and Jebaraj, B.M.C. and Rienhoff, H.Y. and Ecker, R.C. and Zhao, Y. and Bruns, C.J. and Stilgenbauer, S. and Elenitoba-Johnson, K.S.J. and Hallek, M. and Schweiger, M.R. and Odenthal, M. and Vasyutina, E. and Herling, M.
Blood 142 (1): 44-61. 6 July 2023

Small molecule specifically inhibiting microglial nitric oxide release could become a potential treatment for neuroinflammation.
Jordan, P. and Costa, A. and Specker, E. and Popp, O. and Volkamer, A. and Piske, R. and Obrusnik, T. and Kleissle, S. and Stuke, K. and Rex, A. and Neuenschwander, M. and von Kries, J.P. and Nazare, M. and Mertins, P. and Kettenmann, H. and Wolf, S.A.
PLoS ONE 18 (2): e0278325. 6 February 2023

IFNγ binding to extracellular matrix prevents fatal systemic toxicity.
Kemna, J. and Gout, E. and Daniau, L. and Lao, J. and Weißert, K. and Ammann, S. and Kühn, R. and Richter, M. and Molenda, C. and Sporbert, A. and Zocholl, D. and Klopfleisch, R. and Lortat-Jacob, H. and Aichele, P. and Kammertoens, T. and Blankenstein, T.
Nature Immunology 24 (3): 414-422. March 2023

iPSC-derived reactive astrocytes from patients with multiple-sclerosis protect cocultured neurons in inflammatory conditions.
Kerkering, J. and Muinjonov, B. and Rosiewicz, K.S. and Diecke, S. and Biese, C. and Schiweck, J. and Chien, C. and Zocholl, D. and Conrad, T. and Paul, F. and Alisch, M. and Siffrin, V.
Journal of Clinical Investigation 133 (13): e164637. 3 July 2023

Translating metabolomics into clinical practice.
Kirwan, J.A.
Nature Reviews Bioengineering 1 : 228–229. April 2023

Studies in zebrafish and rat models support dual blockade of EP2 and EP4 (prostaglandin E(2) receptors type 2 and 4) for renoprotection in glomerular hyperfiltration and albuminuria.
Kourpa, A. and Schulz, A. and Mangelsen, E. and Kaiser-Graf, D. and Koppers, N. and Stoll, M. and Rothe, M. and Bader, M. and Purfürst, B. and Kunz, S. and Gladytz, T. and Niendorf, T. and Bachmann, S. and Mutig, K. and Bolbrinker, J. and Panakova, D. and Kreutz, R.
Hypertension 80 (4): 771-782. April 2023

Prdm16 mutation determines sex-specific cardiac metabolism and identifies two novel cardiac metabolic regulators.
Kühnisch, J. and Theisen, S. and Dartsch, J. and Fritsche-Guenther, R. and Kirchner, M. and Obermayer, B. and Bauer, A. and Kahlert, A.K. and Rothe, M. and Beule, D. and Heuser, A. and Mertins, P. and Kirwan, J.A. and Berndt, N. and MacRae, C.A. and Hubner, N. and Klaassen, S.
bioRxiv : 2023.01.10.523243. 10 January 2023

Germany's journey toward 14 Tesla human magnetic resonance.
Ladd, M.E. and Quick, H.H. and Speck, O. and Bock, M. and Doerfler, A. and Forsting, M. and Hennig, J. and Ittermann, B. and Möller, H.E. and Nagel, A.M. and Niendorf, T. and Remy, S. and Schaeffter, T. and Scheffler, K. and Schlemmer, H.P. and Schmitter, S. and Schreiber, L. and Shah, N.J. and Stöcker, T. and Uder, M. and Villringer, A. and Weiskopf, N. and Zaiss, M. and Zaitsev, M.
Magnetic Resonance Materials in Physics Biology and Medicine 36 (2): 191-210. April 2023

Estimates of protection levels against SARS-CoV-2 infection and severe COVID-19 in Germany before the 2022/2023 winter season: the IMMUNEBRIDGE project.
Lange, B. and Jaeger, V.K. and Harries, M. and Rücker, V. and Streeck, H. and Blaschke, S. and Petersmann, A. and Toepfner, N. and Nauck, M. and Hassenstein, M.J. and Dreier, M. and von Holt, I. and Budde, A. and Bartz, A. and Ortmann, J. and Kurosinski, M.A. and Berner, R. and Borsche, M. and Brandhorst, G. and Brinkmann, M. and Budde, K. and Deckena, M. and Engels, G. and Fenzlaff, M. and Härtel, C. and Hovardovska, O. and Katalinic, A. and Kehl, K. and Kohls, M. and Krüger, S. and Lieb, W. and Meyer-Schlinkmann, K.M. and Pischon, T. and Rosenkranz, D. and Rübsamen, N. and Rupp, J. and Schäfer, C. and Schattschneider, M. and Schlegtendal, A. and Schlinkert, S. and Schmidbauer, L. and Schulze-Wundling, K. and Störk, S. and Tiemann, C. and Völzke, H. and Winter, T. and Klein, C. and Liese, J. and Brinkmann, F. and Ottensmeyer, P.F. and Reese, J.P. and Heuschmann, P. and Karch, A.
Infection 2 August 2023 (In Press)

Spatiotemporal, optogenetic control of gene expression in organoids.
Legnini, I. and Emmenegger, L. and Zappulo, A. and Rybak-Wolf, A. and Wurmus, R. and Oliveras Martinez, A. and Cerda Jara, C. and Boltengagen, A. and Hessler, T. and Mastrobuoni, G. and Kempa, S. and Zinzen, R. and Woehler, A. and Rajewsky, N.
Nature Methods 21 September 2023 (In Press)

Establishment of gastrointestinal assembloids to study the interplay between epithelial crypts and their mesenchymal niche.
Lin, M. and Hartl, K. and Heuberger, J. and Beccaceci, G. and Berger, H. and Li, H. and Liu, L. and Müllerke, S. and Conrad, T. and Heymann, F. and Woehler, A. and Tacke, F. and Rajewsky, N. and Sigal, M.
Nature Communications 14 (1): 3025. 25 May 2023

Development of selective inhibitors of phosphatidylinositol 3-kinase C2α.
Lo, W.T. and Belabed, H. and Kücükdisli, M. and Metag, J. and Roske, Y. and Prokofeva, P. and Ohashi, Y. and Horatscheck, A. and Cirillo, D. and Krauss, M. and Schmied, C. and Neuenschwander, M. and von Kries, J.P. and Médard, G. and Kuster, Be. and Perisic, O. and Williams, R.L. and Daumke, O. and Payrastre, B. and Severin, S. and Nazaré, M. and Haucke, V.
Nature Chemical Biology 19 (1): 18-27. January 2023

Neurofibromatosis type 1-dependent alterations in mouse microglia function are not cell-intrinsic.
Logiacco, F. and Grzegorzek, L.C. and Cordell, E.C. and Popp, O. and Mertins, P. and Gutmann, D.H. and Kettenmann, H. and Semtner, M.
Acta Neuropathologica Communications 11 (1): 36. 9 March 2023

Serum starvation accelerates intracellular metabolism in endothelial cells.
Lorenz, M. and Fritsche-Guenther, R. and Bartsch, C. and Vietzke, A. and Eisenberger, A. and Stangl, K. and Stangl, V. and Kirwan, J.A.
International Journal of Molecular Sciences 24 (2): 1189. 7 January 2023

Prox2 and Runx3 vagal sensory neurons regulate esophageal motility.
Lowenstein, E.D. and Ruffault, P.L. and Misios, A. and Osman, K.L. and Li, H. and Greenberg, R.S. and Thompson, R. and Song, K. and Dietrich, S. and Li, X. and Vladimirov, N. and Woehler, A. and Brunet, J.F. and Zampieri, N. and Kühn, R. and Liberles, S.D. and Jia, S. and Lewin, G.R. and Rajewsky, N. and Lever, T.E. and Birchmeier, C.
Neuron 111 (14): 2184-2200.e7. 19 July 2023

ASSURED-optimized CRISPR protocol for knockout/SNP knockin in hiPSCs.
Ludwik, K.A. and Telugu, N. and Schommer, S. and Stachelscheid, H. and Diecke, S.
STAR Protocols 4 (3): 102406. 15 September 2023

Platelet-derived factors dysregulate placental sphingosine-1-phosphate receptor 2 in human trophoblasts.
Lyssy, F. and Guettler, J. and Brugger, B.A. and Stern, C. and Forstner, D. and Nonn, O. and Fischer, C. and Herse, F. and Wernitznig, S. and Hirschmugl, B. and Wadsack, C. and Gauster, M.
Reproductive BioMedicine Online 47 (2): 103215. August 2023

A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals.
Lázaro, J. and Costanzo, M. and Sanaki-Matsumiya, M. and Girardot, C. and Hayashi, M. and Hayashi, K. and Diecke, S. and Hildebrandt, T.B. and Lazzari, G. and Wu, J. and Petkov, S. and Behr, R. and Trivedi, V. and Matsuda, M. and Ebisuya, M.
Cell Stem Cell 30 (7): 938-949.e7. 6 July 2023

The genomic landscape across 474 surgically accessible epileptogenic human brain lesions.
López-Rivera, J.A. and Leu, C. and Macnee, M. and Khoury, J. and Hoffmann, L. and Coras, R. and Kobow, K. and Bhattarai, N. and Pérez-Palma, E. and Hamer, H. and Brandner, S. and Rössler, K. and Bien, C.G. and Kalbhenn, T. and Pieper, T. and Hartlieb, T. and Butler, E. and Genovese, G. and Becker, K. and Altmüller, J. and Niestroj, L.M. and Ferguson, L. and Busch, R.M. and Nürnberg, P. and Najm, I. and Blümcke, I. and Lal, D.
Brain 146 (4): 1342-1356. April 2023

A comprehensive molecular profiling approach reveals metabolic alterations that steer bone tissue regeneration.
Löffler, J. and Noom, A. and Ellinghaus, A. and Dienelt, A. and Kempa, S. and Duda, G.N.
Communications Biology 6 (1): 327. 27 March 2023

Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
Mangiante, L. and Alcala, N. and Sexton-Oates, A. and Di Genova, A. and Gonzalez-Perez, A. and Khandekar, A. and Bergstrom, E.N. and Kim, J. and Liu, X. and Blazquez-Encinas, R. and Giacobi, C. and Le Stang, N. and Boyault, S. and Cuenin, C. and Tabone-Eglinger, S. and Damiola, F. and Voegele, C. and Ardin, M. and Michallet, M.C. and Soudade, L. and Delhomme, T.M. and Poret, A. and Brevet, M. and Copin, M.C. and Giusiano-Courcambeck, S. and Damotte, D. and Girard, C. and Hofman, V. and Hofman, P. and Mouroux, J. and Cohen, C. and Lacomme, S. and Mazieres, J. and de Montpreville, V.T. and Perrin, C. and Planchard, G. and Rousseau, N. and Rouquette, I. and Sagan, C. and Scherpereel, A. and Thivolet, F. and Vignaud, J.M. and Jean, D. and Ilg, A.G.S. and Olaso, R. and Meyer, V. and Boland-Auge, A. and Deleuze, J.F. and Altmuller, J. and Nuernberg, P. and Ibáñez-Costa, A. and Castaño, J.P. and Lantuejoul, S. and Ghantous, A. and Maussion, C. and Courtiol, P. and Hernandez-Vargas, H. and Caux, C. and Girard, N. and Lopez-Bigas, N. and Alexandrov, L.B. and Galateau-Salle, F. and Foll, M. and Fernandez-Cuesta, L.
Nature Genetics 55 (4): 607-618. April 2023

Replicative aging impedes stress-induced assembly of a key human protein disaggregase.
Mathangasinghe, Y. and Alberts, N. and Rosado, C.J. and Cox, D. and Payne, N.L. and Ormsby, A.R. and Alp, K.M. and Sakson, R. and Uthishtran, S. and Ruppert, T. and Arumugam, S. and Hatters, D.M. and Kampinga, H.H. and Nillegoda, N.B.
bioRxiv : 2022.06.25.497591. 8 January 2023

Bioactive phytochemicals from sesame oil processing by-products.
Mekky, R.H. and Hegazy, M.M. and Cádiz-Gurrea, M.d.l.L. and Fernández-Ochoa, Á. and Segura Carretero, A.
In: Bioactive phytochemicals from vegetable oil and oilseed processing by-products. Reference Series in Phytochemistry, 1 . Springer, Cham, Switzerland, 155-194. ISBN 978-3-030-91380-9 22 March 2023

Massively parallel identification of mRNA localization elements in primary cortical neurons.
Mendonsa, S. and von Kügelgen, N. and Dantsuji, S. and Ron, M. and Breimann, L. and Baranovskii, A. and Lödige, I. and Kirchner, M. and Fischer, M. and Zerna, N. and Bujanic, L. and Mertins, P. and Ulitsky, I. and Chekulaeva, M.
Nature Neuroscience 26 (3): 394-405. March 2023

Human induced pluripotent stem cell-derived pericytes as scalable and editable source to study direct lineage reprogramming into induced neurons.
Menon, R. and Petrucci, L. and Lohrer, B. and Zhang, J. and Schulze, M. and Schichor, C. and Winner, B. and Winkler, J. and Riemenschneider, M.J. and Kühn, R. and Falk, S. and Karow, M.
Cellular Reprogramming 27 June 2023 (In Press)

Pharmacological inhibition of bromodomain and extra-terminal proteins induces an NRF-2-mediated antiviral state that is subverted by SARS-CoV-2 infection.
Mhlekude, B. and Postmus, D. and Stenzel, S. and Weiner, J. and Jansen, J. and Zapatero-Belinchón, F.J. and Olmer, R. and Richter, A. and Heinze, J. and Heinemann, N. and Mühlemann, B. and Schroeder, S. and Jones, T.C. and Müller, M.A. and Drosten, C. and Pich, A. and Thiel, V. and Martin, U. and Niemeyer, D. and Gerold, G. and Beule, D. and Goffinet, C.
PLoS Pathogens 19 (9): e1011657. 25 September 2023 (In Press)

Generation of an induced pluripotent stem cell line from a Huntington's disease patient with a long HTT-PolyQ sequence.
Miller, D.C. and Lisowski, P. and Genehr, C. and Wanker, E.E. and Priller, J. and Prigione, A. and Diecke, S.
Stem Cell Research 68 : 103056. April 2023

Sodium as an important regulator of immunometabolism.
Miyauchi, H. and Geisberger, S. and Luft, F.C. and Wilck, N. and Stegbauer, J. and Wiig, H. and Dechend, R. and Jantsch, J. and Kleinewietfeld, M. and Kempa, S. and Mueller, D.N.
Hypertension 7 September 2023 (In Press)

Loss of microglial MCT4 leads to defective synaptic pruning and anxiety-like behavior in mice.
Monsorno, K. and Ginggen, K. and Ivanov, A. and Buckinx, A. and Lalive, A.L. and Tchenio, A. and Benson, S. and Vendrell, M. and D'Alessandro, A. and Beule, D. and Pellerin, L. and Mameli, M. and Paolicelli, R.C.
Nature Communications 14 (1): 5749. 16 September 2023

Distinct tissue niches direct lung immunopathology via CCL18 and CCL21 in severe COVID-19.
Mothes, R. and Pascual-Reguant, A. and Koehler, R. and Liebeskind, J. and Liebheit, A. and Bauherr, S. and Philipsen, L. and Dittmayer, C. and Laue, M. and von Manitius, R. and Elezkurtaj, S. and Durek, P. and Heinrich, F. and Heinz, G.A. and Guerra, G.M. and Obermayer, B. and Meinhardt, J. and Ihlow, J. and Radke, J. and Heppner, F.L. and Enghard, P. and Stockmann, H. and Aschman, T. and Schneider, J. and Corman, V.M. and Sander, L.E. and Mashreghi, M.F. and Conrad, T. and Hocke, A.C. and Niesner, R.A. and Radbruch, H. and Hauser, A.E.
Nature Communications 14 (1): 791. 11 February 2023

Bringing MRI to low- and middle-income countries: Directions, challenges and potential solutions.
Murali, S. and Ding, H. and Adedeji, F. and Qin, C. and Obungoloch, J. and Asllani, I. and Anazodo, U. and Ntusi, N.A.B. and Mammen, R. and Niendorf, T. and Adeleke, S.
NMR in Biomedicine : e4992. 4 July 2023 (In Press)

High-throughput metabolomics applications in pathogenesis and diagnosis of valvular heart disease.
Mutithu, D.W. and Kirwan, J.A. and Adeola, H.A. and Aremu, O.O. and Lumngwena, E.N. and Wiesner, L. and Skatulla, S. and Naidoo, R. and Ntusi, N.A.B.
Reviews in Cardiovascular Medicine 24 (6): 169. June 2023

The Berlin-Buch respiration chamber for energy expenditure measurements.
Mähler, A. and Schütte, T. and Steiniger, J. and Boschmann, M.
European Journal of Applied Physiology 123 (6): 1359-1368. June 2023

Instrumental drift in untargeted metabolomics: optimizing data quality with intrastudy QC samples.
Märtens, A. and Holle, J. and Mollenhauer, B. and Wegner, A. and Kirwan, J. and Hiller, K.
Metabolites 13 (5): 665. 16 May 2023

Salt sensitivity includes effects on immune cell signalling and metabolism.
Müller, D.N. and Geisberger, S. and Kleinewietfeld, M. and Jantsch, J.
Nature Reviews Immunology 23 (6): 341-342. June 2023

A single-cell RNA labeling strategy for measuring stress response upon tissue dissociation.
Neuschulz, A. and Bakina, O. and Badillo Lisakowski, V. and Olivares-Chauvet, P. and Conrad, T. and Gotthardt, M. and Kettenmann, H. and Junker, J.P.
Molecular Systems Biology 19 (2): e11147. 10 February 2023

SODAR: managing multiomics study data and metadata.
Nieminen, M. and Stolpe, O. and Kuhring, M. and Weiner, J. and Pett, P. and Beule, D. and Holtgrewe, M.
GigaScience 12 : giad052. 27 July 2023

Disease- and sex-specific differences in patients with heart valve disease: a proteome study.
Nordmeyer, S. and Kraus, M. and Ziehm, M. and Kirchner, M. and Schafstedde, M. and Kelm, M. and Niquet, S. and Stephen, M.M. and Baczko, I. and Knosalla, C. and Schapranow, M.P. and Dittmar, G. and Gotthardt, M. and Falcke, M. and Regitz-Zagrosek, V. and Kuehne, T. and Mertins, P.
Life Science Alliance 6 (3): e202201411. March 2023

Radiofrequency antenna concepts for human cardiac MR at 14.0 T.
Nurzed, B. and Kuehne, A. and Aigner, C.S. and Schmitter, S. and Niendorf, T. and Eigentler, T.W.
Magnetic Resonance Materials in Physics Biology and Medicine 36 (2): 257-277. April 2023

Single-cell clonal tracking of persistent T-cells in allogeneic hematopoietic stem cell transplantation.
Obermayer, B. and Keilholz, L. and Conrad, T. and Frentsch, M. and Blau, I.W. and Vuong, L. and Lesch, S. and Movasshagi, K. and Tietze-Stolley, C. and Loyal, L. and Henze, L. and Penack, O. and Stervbo, U. and Babel, N. and Haas, S. and Beule, D. and Bullinger, L. and Wittenbecher, Friedrich and Na, I.K.
Frontiers in Immunology 14 : 1114368. 10 February 2023

Modeling of ACTN4-based podocytopathy using Drosophila nephrocytes.
Odenthal, J. and Dittrich, S. and Ludwig, V. and Merz, T. and Reitmeier, K. and Reusch, B. and Höhne, M. and Cosgun, Z.C. and Hohenadel, M. and Putnik, J. and Göbel, H. and Rinschen, M.M. and Altmüller, J. and Koehler, S. and Schermer, B. and Benzing, T. and Beck, B.B. and Brinkkötter, P.T. and Habbig, S. and Bartram, M.P.
Kidney International Reports 8 (2): 317-329. February 2023

Genetically determined circulating resistin concentrations and risk of colorectal cancer: a two-sample Mendelian randomization study.
Pham, T.T. and Nimptsch, K. and Papadimitriou, N. and Aleksandrova, K. and Jenab, M. and Gunter, M.J. and Le Marchand, L. and Li, L. and Lynch, B.M. and Castellví-Bel, S. and Phipps, A.I. and Schmit, S.L. and Brenner, H. and Ogino, S. and Giovannucci, E. and Pischon, T.
Journal of Cancer Research and Clinical Oncology 21 August 2023 (In Press)

Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease.
Piwecka, M. and Rajewsky, N. and Rybak-Wolf, A.
Nature Reviews Neurology 19 (6): 346–362. June 2023

Targeted treatment in a case series of AR+, HRAS/PIK3CA co-mutated salivary duct carcinoma.
Rieke, D.T. and Schröder, S. and Schafhausen, P. and Blanc, E. and Zuljan, E. and von der Emde, B. and Beule, D. and Keller, U. and Keilholz, U. and Klinghammer, K.
Frontiers in Oncology 13 : 1107134. 2023

Mutational topography reflects clinical neuroblastoma heterogeneity.
Rodriguez-Fos, E. and Planas-Fèlix, M. and Burkert, M. and Puiggròs, M. and Toedling, J. and Thiessen, N. and Blanc, E. and Szymansky, A. and Hertwig, F. and Ishaque, N. and Beule, D. and Torrents, D. and Eggert, A. and Koche, R.P. and Schwarz, R.F. and Haase, K. and Schulte, J.H. and Henssen, A.G.
Cell Genomics : 100402. 7 September 2023 (In Press)

HIF prolyl hydroxylase 2/3 deletion disrupts astrocytic integrity and exacerbates neuroinflammation.
Rosiewicz, K.S. and Muinjonov, B. and Kunz, S. and Radbruch, H. and Chen, J. and Jüttner, R. and Kerkering, J. and Ucar, J. and Crowley, T. and Wielockx, B. and Paul, F. and Alisch, M. and Siffrin, V.
Glia 71 (8): 2024-2044. August 2023

Genomic ALK alterations in primary and relapsed neuroblastoma.
Rosswog, C. and Fassunke, J. and Ernst, A. and Schömig-Markiefka, B. and Merkelbach-Bruse, S. and Bartenhagen, C. and Cartolano, M. and Ackermann, S. and Theissen, J. and Blattner-Johnson, M. and Jones, B. and Schramm, K. and Altmüller, J. and Nürnberg, P. and Ortmann, M. and Berthold, F. and Peifer, M. and Büttner, R. and Westermann, F. and Schulte, J.H. and Simon, T. and Hero, B. and Fischer, M.
British Journal of Cancer 128 (8): 1559-1571. 12 April 2023

Modelling viral encephalitis caused by herpes simplex virus 1 infection in cerebral organoids.
Rybak-Wolf, A. and Wyler, E. and Pentimalli, T.M. and Legnini, I. and Oliveras Martinez, A. and Glažar, P. and Loewa, A. and Kim, S.J. and Kaufer, B.B. and Woehler, A. and Landthaler, M. and Rajewsky, N.
Nature Microbiology 8 (7): 1252-1266. July 2023

Advanced radio frequency applicators for thermal magnetic resonance theranostics of brain tumors.
Saha, N. and Kuehne, A. and Millward, J.M. and Eigentler, T.W. and Starke, L. and Waiczies, S. and Niendorf, T.
Cancers 15 (8): 2303. 14 April 2023

High fidelity 3D magnetic stray field mapping of smartphones to address safety considerations with active implantable electronic medical devices.
Saha, N. and Millward, J.M. and Herrmann, C.J.J. and Rahimi, F. and Han, H. and Lacour, P. and Blaschke, F. and Niendorf, T.
Sensors 23 (3): 1209. 20 January 2023

Transgenic angiotensin-converting enzyme 2 overexpression in the rat vasculature protects kidneys from ageing-induced injury.
Sanad, A.M. and Qadri, F. and Popova, E. and Rodrigues, A.F. and Heinbokel, T. and Quach, S. and Schulz, A. and Bachmann, S. and Kreutz, R. and Alenina, N. and Bader, M.
Kidney International 104 (2): 293-304. August 2023

Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames.
Sandmann, C.L. and Schulz, J.F. and Ruiz-Orera, J. and Kirchner, M. and Ziehm, M. and Adami, E. and Marczenke, M. and Christ, A. and Liebe, N. and Greiner, J. and Schoenenberger, A. and Mücke, M.B. and Liang, N. and Moritz, R.L. and Sun, Z. and Deutsch, E.W. and Gotthardt, M. and Mudge, J.M. and Prensner, J.R. and Willnow, T.E. and Mertins, P. and van Heesch, S. and Hubner, N.
Molecular Cell 83 (6): 994-1011.e18. 16 March 2023

Longitudinal effects of elexacaftor/tezacaftor/ivacaftor on sputum viscoelastic properties, airway infection and inflammation in patients with cystic fibrosis.
Schaupp, L. and Addante, A. and Völler, M. and Fentker, K. and Kuppe, A. and Bardua, M. and Duerr, J. and Piehler, L. and Röhmel, J. and Thee, S. and Kirchner, M. and Ziehm, M. and Lauster, D. and Haag, R. and Gradzielski, M. and Stahl, M. and Mertins, P. and Boutin, S. and Graeber, S.Y. and Mall, M.A.
European Respiratory Journal 62 (2): 2202153. 1 August 2023

Scaling the mountains: what lies above 7 Tesla magnetic resonance?
Schmidt, R. and Keban, E. and Bollmann, S. and Wiggins, C.J. and Niendorf, T.
Magnetic Resonance Materials in Physics Biology and Medicine 36 (2): 151-157. April 2023

Homozygous loss-of-function variants in FILIP1 cause autosomal recessive arthrogryposis multiplex congenita with microcephaly.
Schnabel, F. and Schuler, E. and Al-Maawali, A. and Chaurasia, A. and Syrbe, S. and Al-Kindi, A. and Bhavani, G.S. and Shukla, A. and Altmüller, J. and Nürnberg, P. and Banka, S. and Girisha, K.M. and Li, Y. and Wollnik, B. and Yigit, G.
Human Genetics 142 (4): 543-552. April 2023

Disintegration of the NuRD complex in primary human muscle stem cells in critical illness myopathy.
Schneider, J. and Sundaravinayagam, D. and Blume, A. and Marg, A. and Grunwald, S. and Metzler, E. and Escobar, H. and Müthel, S. and Wang, H. and Wollersheim, T. and Weber-Carstens, S. and Akalin, A. and Di Virgilio, M. and Tursun, B. and Spuler, S.
International Journal of Molecular Sciences 24 (3): 2772. 1 February 2023

The genetic spectrum of congenital ocular motor apraxia type Cogan: an observational study, continued.
Schröder, S. and Yigit, G. and Li, Y. and Altmüller, J. and Büttel, H.M. and Fiedler, B. and Kretzschmar, C. and Nürnberg, P. and Seeger, J. and Serpieri, V. and Valente, E.M. and Wollnik, B. and Boltshauser, E. and Brockmann, K.
Orphanet Journal of Rare Diseases 18 (1): 101. 2 May 2023

A circular RNA expressed from the FAT3 locus regulates neural development.
Seeler, S. and Andersen, M.S. and Sztanka-Toth, T. and Rybiczka-Tešulov, M. and van den Munkhof, M.H. and Chang, C.C. and Maimaitili, M. and Venø, M.T. and Hansen, T.B. and Pasterkamp, R.J. and Rybak-Wolf, A. and Denham, M. and Rajewsky, N. and Kristensen, L.S. and Kjems, J.
Molecular Neurobiology 60 (6): 3239–3260. June 2023

Mutant phosphodiesterase 3A protects the kidney from hypertension-induced damage.
Sholokh, A. and Walter, S. and Markó, L. and McMurray, B.J. and Sunaga-Franze, D.Y. and Xu, M. and Zühlke, K. and Russwurm, M. and Bartolomaeus, T.U.P. and Langanki, R. and Qadri, F. and Heuser, A. and Patzak, A. and Forslund, S.K. and Bähring, S. and Borodina, T. and Persson, P.B. and Maass, P.G. and Bader, M. and Klussmann, E.
Kidney International 104 (2): 388-393. August 2023

Thrifty energy phenotype predicts weight regain in postmenopausal women with overweight or obesity and is related to FGFR1 signaling.
Spranger, L. and Weiner, J. and Bredow, J. and Zeitz, U. and Grittner, U. and Boschmann, M. and Dickmann, S. and Stobäus, N. and Schwartzenberg, R.J. and Brachs, M. and Spranger, J. and Mai, K.
Clinical Nutrition 42 (4): 559-567. April 2023

First in vivo fluorine-19 magnetic resonance imaging of the multiple sclerosis drug siponimod.
Starke, L. and Millward, J.M. and Prinz, C. and Sherazi, F. and Waiczies, H. and Lippert, C. and Nazaré, M. and Paul, F. and Niendorf, T. and Waiczies, S.
Theranostics 13 (4): 1217-1234. 5 February 2023

Epigenetic regulation of plastin 3 expression by the macrosatellite DXZ4 and the transcriptional regulator CHD4.
Strathmann, E.A. and Hölker, I. and Tschernoster, N. and Hosseinibarkooie, S. and Come, J. and Martinat, C. and Altmüller, J. and Wirth, B.
American Journal of Human Genetics 110 (3): 442-459. 2 March 2023

Cytokines as potential novel therapeutic targets in severe inflammatory cardiomyopathy.
Suwalski, P. and Golpour, A. and Weiner, J. and Musigk, N. and Balzer, F. and Giesa, N. and Amr, A. and Trebing, J. and Sedaghat, F. and Meder, B. and Beule, D. and Landmesser, U. and Heidecker, B.
bioRxiv : 2023.07.27.23293253. 4 August 2023

Community survey results show that standardisation of preclinical imaging techniques remains a challenge.
Tavares, A.A.S. and Mezzanotte, L. and McDougald, W. and Bernsen, M.R. and Vanhove, C. and Aswendt, M. and Ielacqua, G.D. and Gremse, F. and Moran, C.M. and Warnock, G. and Kuntner, C. and Huisman, M.C.
Molecular imaging and biology 25 (3): 560-568. June 2023

Carm1-arginine methylation of the transcription factor C/EBPα regulates transdifferentiation velocity.
Torcal Garcia, G. and Kowenz-Leutz, E. and Tian, T.V and Klonizakis, A. and Lerner, J. and De Andres-Aguayo, L. and Sapozhnikova, V. and Berenguer, C. and Carmona, M.P. and Casadesus, M.V. and Bulteau, R. and Francesconi, M. and Peiro, S. and Mertins, P. and Zaret, K. and Leutz, A. and Graf, T.
eLife 12 : e83951. 27 June 2023

Application of a spacer-nick gene-targeting approach to repair disease-causing mutations with increased safety.
Tran, N.T. and Lebedin, M. and Danner, E. and Kühn, R. and Rajewsky, K. and Chu, V.T.
Bio-protocol 13 (8): e4661. 20 April 2023

The fate of oxidative strand breaks in mitochondrial DNA.
Trombly, G. and Said, A.M. and Kudin, A.P. and Peeva, V. and Altmüller, J. and Becker, K. and Köhrer, K. and Zsurka, G. and Kunz, W.S.
Antioxidants 12 (5): 1087. 12 May 2023

Long-read sequencing identifies a common transposition haplotype predisposing for CLCNKB deletions.
Tschernoster, N. and Erger, F. and Kohl, S. and Reusch, B. and Wenzel, A. and Walsh, S. and Thiele, H. and Becker, C. and Franitza, M. and Bartram, M.P. and Kömhoff, M. and Schumacher, L. and Kukat, C. and Borodina, T. and Quedenau, C. and Nürnberg, P. and Rinschen, M.M. and Driller, J.H. and Pedersen, B.P. and Schlingmann, K.P. and Hüttel, B. and Bockenhauer, D. and Beck, B. and Altmüller, J.
Genome Medicine 15 (1): 62. 23 August 2023

A local subset of mesenchymal cells expressing the transcription factor Osr1 orchestrates lymph node initiation.
Vallecillo-García, P. and Orgeur, M. and Comai, G. and Poehle-Kronnawitter, S. and Fischer, C. and Gloger, M. and Dumas, C.E. and Giesecke-Thiel, C. and Sauer, S. and Tajbakhsh, S. and Höpken, U.E. and Stricker, S.
Immunity 56 (6): 1204-1219. 13 June 2023

Associations of migration, socioeconomic position and social relations with depressive symptoms – analyses of the German National Cohort baseline data.
Vonneilich, N. and Becher, H. and Bohn, B. and Brandes, B. and Castell, S. and Deckert, A. and Dragano, N. and Franzke, C.W. and Führer, A. and Gastell, S. and Greiser, H. and Keil, T. and Klett-Tammen, C. and Koch-Gallenkamp, L. and Krist, L. and Leitzmann, M. and Meinke-Franze, C. and Mikolajczyk, R. and Moreno Velasquez, I. and Obi, N. and Peters, A. and Pischon, T. and Reuter, M. and Schikowski, T. and Schmidt, B. and Schulze, M. and Sergeev, D. and Stang, A. and Völzke, H. and Wiessner, C. and Zeeb, H. and Lüdecke, D. and von dem Knesebeck, O.
International Journal of Public Health 68 : 1606097. 18 July 2023

Gene editing in mouse zygotes using the CRISPR/Cas9 system.
Wefers, B. and Wurst, W. and Kühn, R.
Methods in Molecular Biology 2631 : 207-230. 2023

Assessment of pre-clinical liver models based on their ability to predict the liver-tropism of adeno-associated virus vectors.
Westhaus, A. and Cabanes Creus, M. and Dilworth, K.L. and Zhu, E. and Salas, D. and Navarro, R.G. and Amaya, A.K. and Scott, A. and Kwiatek, M. and McCorkindale, A.L. and Hayman, T.E. and Frahm, A. and Perocheau, D. and Tran, B.M. and Vincan, E. and Wong, S.L. and Waters, S.A. and Riddiough, G.E. and Perini, M.V. and Wilson, L.O.W. and Baruteau, J. and Diecke, S. and Gonzalez-Aseguinolaza, G. and Santilli, G. and Thrasher, A.J. and Alexander, I.E. and Lisowski, L.
Human Gene Therapy 34 (7-8): 273-288. April 2023

Mouse models of human multiple myeloma subgroups.
Winkler, W. and Farré Díaz, C. and Blanc, E. and Napieczynska, H. and Langner, P. and Werner, M. and Walter, B. and Wollert-Wulf, B. and Yasuda, T. and Heuser, A. and Beule, D. and Mathas, S. and Anagnostopoulos, I. and Rosenwald, A. and Rajewsky, K. and Janz, M.
Proceedings of the National Academy of Sciences of the United States of America 120 (10): e2219439120. 7 March 2023

A CRISPR/Cas9-mediated screen identifies determinants of early plasma cell differentiation.
Xiong, E. and Popp, O. and Salomon, C. and Mertins, P. and Kocks, C. and Rajewsky, K. and Chu, V.T.
Frontiers in Immunology 13 : 1083119. 5 January 2023

Diagnostic and prognostic performance of renal compartment volume and the apparent diffusion coefficient obtained from magnetic resonance imaging in mild, moderate and severe diabetic kidney disease.
Zhao, K. and Li, S. and Liu, Y. and Li, Q. and Lin, H. and Wu, Z. and Seeliger, E. and Niendorf, T. and Liu, Z. and Wang, W.
Quantitative Imaging in Medicine and Surgery 13 (6): 3973-3987. 1 June 2023

Noninvasive assessment of diabetic kidney disease with MRI: hype or hope?
Zhao, K. and Seeliger, E. and Niendorf, T. and Liu, Z.
Journal of Magnetic Resonance Imaging 7 September 2023 (In Press)

Ablation of collagen XII disturbs joint extracellular matrix organization and causes patellar subluxation.
Zhu, M. and Metzen, F. and Hopkinson, M. and Betz, J. and Heilig, J. and Sodhi, J. and Imhof, T. and Niehoff, A. and Birk, D.E. and Izu, Y. and Krüger, M. and Pitsillides, A. A. and Altmüller, J. and van Osch, G.J.V.M. and Straub, V. and Schreiber, G. and Paulsson, M. and Koch, M. and Brachvogel, B.
iScience 26 (7): 107225. 21 July 2023

Prioritization of non-coding elements involved in non-syndromic cleft lip with/without cleft palate through genome-wide analysis of de novo mutations.
Zieger, H.K. and Weinhold, L. and Schmidt, A. and Holtgrewe, M. and Juranek, S.A. and Siewert, A. and Scheer, A.B. and Thieme, F. and Mangold, E. and Ishorst, N. and Brand, F.U. and Welzenbach, J. and Beule, D. and Paeschke, K. and Krawitz, P.M. and Ludwig, K.U.
Human Genetics and Genomics Advances 4 (1): 100166. 12 January 2023

Tumour mutational burden and survival with molecularly matched therapy.
de Bortoli, T. and Benary, M. and Horak, P. and Lamping, M. and Stintzing, S. and Tinhofer, I. and Leyvraz, S. and Schäfer, R. and Klauschen, F. and Keller, U. and Stenzinger, A. and Fröhling, S. and Kurzrock, R. and Keilholz, U. and Rieke, D.T. and Jelas, I.
European Journal of Cancer 190 : 112925. September 2023

The phenotypic and genotypic spectrum of epilepsy and intellectual disability in adults: Implications for genetic testing.
von Brauchitsch, S. and Haslinger, D. and Lindlar, S. and Thiele, H. and Bernsen, N. and Zahnert, F. and Reif, P.S. and Balcik, Y. and Au, P.Y.B. and Josephson, C. and Altmüller, J. and Strzelczyk, A. and Knake, S. and Rosenow, F. and Chiocchetti, A. and Klein, K.M.
Epilepsia Open 8 (2): 497-508. June 2023

2022

HDHL-INTIMIC: a European knowledge platform on food, diet, intestinal microbiomics, and human health.
Agamennone, V. and Abuja, P.M. and Basic, M. and De Angelis, M. and Gessner, A. and Keijser, B. and Larsen, M. and Pinart, M. and Nimptsch, K. and Pujos-Guillot, E. and Schlicht, K. and Sharon, I. and Untersmayr, E. and Laudes, M. and Pischon, T. and Bouwman, J.
Nutrients 14 (9): 1881. 29 April 2022

A novel MAP3K20 mutation causing centronuclear myopathy-6 with fiber-type disproportion in a Pakistani family.
Ahmad, I. and Khan, A. and Noor Ul Ayan, H. and Budde, B. and Altmüller, J. and Korejo, A.A. and Nürnberg, G. and Thiele, H. and Tariq, M. and Nürnberg, P. and Erdmann, J.
Journal of Human Genetics 11 October 2022

MYCN mediates cysteine addiction and sensitizes neuroblastoma to ferroptosis.
Alborzinia, H. and Flórez, A.F. and Kreth, S. and Brückner, L.M. and Yildiz, U. and Gartlgruber, M. and Odoni, D.I. and Poschet, G. and Garbowicz, K. and Shao, C. and Klein, C. and Meier, J. and Zeisberger, P. and Nadler-Holly, M. and Ziehm, M. and Paul, F. and Burhenne, J. and Bell, E. and Shaikhkarami, M. and Würth, R. and Stainczyk, S.A. and Wecht, E.M. and Kreth, J. and Büttner, M. and Ishaque, N. and Schlesner, M. and Nicke, B. and Stresemann, C. and Llamazares-Prada, M. and Reiling, J.H. and Fischer, M. and Amit, I. and Selbach, M. and Herrmann, C. and Wölfl, S. and Henrich, K.O. and Höfer, T. and Trumpp, A. and Westermann, F.
Nature Cancer 3 (4): 471-485. 28 April 2022

Single cell metabolism: current and future trends.
Ali, A. and Davidson, S. and Fraenkel, E. and Gilmore, I. and Hankemeier, T. and Kirwan, J.A. and Lane, A.N. and Lanekoff, I. and Larion, M. and McCall, L.I. and Murphy, M. and Sweedler, J.V. and Zhu, C.
Metabolomics 18 (10): 77. 1 October 2022

In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation.
Anania, C. and Acemel, R.D. and Jedamzick, J. and Bolondi, A. and Cova, G. and Brieske, N. and Kühn, R. and Wittler, L. and Real, F.M. and Lupiáñez, D.G.
Nature Genetics July 2022

The role of respiratory microbiota in the protection against viral diseases: respiratory commensal bacteria as next-generation probiotics for COVID-19.
Andrade, B.G.N. and Cuadrat, R.R.C. and Tonetti, F.R. and Kitazawa, H. and Villena, J.
Bioscience of Microbiota, Food and Health 41 (3): 94-102. 1 July 2022

De novo whole genome assembly of the Roborovski dwarf hamster (Phodopus roborovskii) genome, an animal model for severe/critical COVID-19.
Andreotti, S. and Altmüller, J. and Quedenau, C. and Borodina, T. and Nouailles, G. and Teixeira Alves, L.G. and Landthaler, M. and Bieniara, M. and Trimpert, J. and Wyler, E.
Genome Biology and Evolution 14 (7): evac100. July 2022

The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators.
Appel, L.M. and Grishkovskaya, I. and Benedum, J. and Franke, V. and Polyansky, A. and Neudolt, A. and Wunder, A. and Zagrovic, B. and Akalin, A. and Djinovic-Carugo, K. and Slade, D.
bioRxiv : 2022.02.26.482114. 27 February 2022

LABKIT: labeling and segmentation toolkit for big image data.
Arzt, M. and Deschamps, J. and Schmied, C. and Pietzsch, T. and Schmidt, D. and Tomancak, P. and Haase, R. and Jug, F.
Frontiers in Computer Science 4 : 777728. 10 February 2022

De novo variants of CSNK2B cause a new intellectual disability-craniodigital syndrome by disrupting the canonical Wnt signaling pathway.
Asif, M. and Kaygusuz, E. and Shinawi, M. and Nickelsen, A. and Hsieh, T.C. and Wagle, P. and Budde, B. and Hochscherf, J. and Abdullah, U. and Höning, S. and Nienberg, C. and Lindenblatt, D. and Noegel, A.A. and Altmüller, J. and Thiele, H. and Motameny, S. and Fleischer, N. and Segal, I. and Pais, L. and Tinschert, S. and Samra, N.G. and Savatt, J.M. and Rudy, N.L. and De Luca, C. and Fortugno, P. and White, S.M. and Krawitz, P. and Hurst, A.C.E. and Niefind, K. and Jose, J. and Brancati, F. and Nürnberg, P. and Hussain, M.S.
Human Genetics and Genomics Advances 3 (3): 100111. 14 July 2022

A novel missense variant of SCN4A co-segregates with congenital essential tremor in a consanguineous Kurdish family.
Asif, M. and Mocanu, I.D. and Abdullah, U. and Höhne, W. and Altmüller, J. and Makhdoom, E.U.H. and Thiele, H. and Baig, S.M. and Nürnberg, P. and Graul-Neumann, L. and Hussain, M.S.
American Journal of Medical Genetics A 188 (4): 1251-1258. April 2022

Selective endocytosis of Ca(2+)-permeable AMPARs by the Alzheimer's disease risk factor CALM bidirectionally controls synaptic plasticity.
Azarnia Tehran, D. and Kochlamazashvili, G. and Pampaloni, N. P. and Sposini, S. and Shergill, J.K. and Lehmann, M. and Pashkova, N. and Schmidt, C. and Löwe, D. and Napieczynska, H. and Heuser, A. and Plested, A.J.R. and Perrais, D. and Piper, R.C. and Haucke, V. and Maritzen, T.
Science Advances 8 (21): eabl5032. 27 May 2022

RS-FISH: precise, interactive, fast, and scalable FISH spot detection.
Bahry, E. and Breimann, L. and Zouinkhi, M. and Epstein, L. and Kolyvanov, K. and Mamrak, N. and King, B. and Long, Xi and Harrington, K.I.S. and Lionnet, T. and Preibisch, S.
Nature Methods 19 (12): 1563-1567. December 2022

Protection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered region.
Balasubramanian, S. and Andreani, M. and Goncalves Andrade, J. and Saha, T. and Sundaravinayagam, D. and Garzón, J. and Zhang, W. and Popp, O. and Hiraga, S. and Rahjouei, A. and Rosen, D.B. and Mertins, P. and Chait, B.T. and Donaldson, A.D. and Di Virgilio, M.
eLife 11 : e75047. 13 April 2022

Aurora kinase A is involved in controlling the localization of aquaporin-2 in renal principal cells.
Baltzer, S. and Bulatov, T. and Schmied, C. and Krämer, A. and Berger, B.T. and Oder, A. and Walker-Gray, R. and Kuschke, C. and Zühlke, K. and Eichhorst, J. and Lehmann, M. and Knapp, S. and Weston, J. and von Kries, J.P. and Süssmuth, R.D. and Klussmann, E.
International Journal of Molecular Sciences 23 (2): 763. 11 January 2022

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Baranasic, D. and Hörtenhuber, M. and Balwierz, P.J. and Zehnder, T. and Mukarram, A.K. and Nepal, C. and Várnai, C. and Hadzhiev, Y. and Jimenez-Gonzalez, A. and Li, N. and Wragg, J. and D'Orazio, F.M. and Relic, D. and Pachkov, M. and Díaz, N. and Hernández-Rodríguez, B. and Chen, Z. and Stoiber, M. and Dong, M. and Stevens, I. and Ross, S.E. and Eagle, A. and Martin, R. and Obasaju, O. and Rastegar, S. and McGarvey, A.C. and Kopp, W. and Chambers, E. and Wang, D. and Kim, H.R. and Acemel, R.D. and Naranjo, S. and Łapiński, M. and Chong, V. and Mathavan, S. and Peers, B. and Sauka-Spengler, T. and Vingron, M. and Carninci, P. and Ohler, U. and Lacadie, S.A. and Burgess, S.M. and Winata, C. and van Eeden, F. and Vaquerizas, J.M. and Gómez-Skarmeta, J.L. and Onichtchouk, D. and Brown, B.J. and Bogdanovic, O. and van Nimwegen, E. and Westerfield, M. and Wardle, F.C and Daub, C.O. and Lenhard, B. and Müller, F.
Nature Genetics 54 (7): 1037-1050. July 2022

Multi-omics alleviates the limitations of panel sequencing for cancer drug response prediction.
Baranovskii, A. and Gündüz, I.B. and Franke, V. and Uyar, B. and Akalin, A.
Cancers 14 (22): 5604. 15 November 2022

PyZebraScope: an open-source platform for brain-wide neural activity imaging in zebrafish.
Barbara, R. and Nagathihalli Kantharaju, M. and Haruvi, R. and Harrington, K. and Kawashima, T.
Frontiers in Cell and Developmental Biology 10 : 875044. 19 May 2022

PyZebraScope: an open-source platform for brain-wide neural activity imaging in zebrafish.
Barbara, R. and Nagathihalli Kantharaju, M. and Haruvi, R. and Harrington, K. and Kawashima, T.
bioRxiv : bioRxiv. 15 February 2022

Investigating the role of GLUL as a survival factor in cellular adaptation to glutamine depletion via targeted stable isotope resolved metabolomics.
Bayram, S. and Razzaque, Y.S. and Geisberger, S. and Pietzke, M. and Fürst, S. and Vechiatto, C. and Forbes, M. and Mastrobuoni, G. and Kempa, S.
Frontiers in Molecular Biosciences 9 : 859787. 12 August 2022

SUMOylation of the chromodomain factor MRG-1 in C. elegans affects chromatin-regulatory dynamics.
Baytek, G. and Blume, A. and Demirel, F.G. and Bulut, S. and Popp, O. and Mertins, P. and Tursun, B.
Biotechniques 73 (1): 5-17. June 2022

Robust co-immunoprecipitation with mass spectrometry for Caenorhabditis elegans using solid-phase enhanced sample preparation.
Baytek, G. and Popp, O. and Mertins, P. and Tursun, B.
Biotechniques 72 (5): 175-184. May 2022

The single-cell transcriptional landscape of lung carcinoid tumors.
Bischoff, P. and Trinks, A. and Wiederspahn, J. and Obermayer, B. and Pett, J.P. and Jurmeister, P. and Elsner, A. and Dziodzio, T. and Rückert, J.C. and Neudecker, J. and Falk, C. and Beule, D. and Sers, C. and Morkel, M. and Horst, D. and Klauschen, F. and Blüthgen, N.
International Journal of Cancer 150 (12): 2058-2071. 15 June 2022

Structural insights into crista junction formation by the Mic60-Mic19 complex.
Bock-Bierbaum, T. and Funck, K. and Wollweber, F. and Lisicki, E. and von der Malsburg, K. and von der Malsburg, A. and Laborenz, J. and Noel, J.K. and Hessenberger, M. and Jungbluth, S. and Bernert, C. and Kunz, S. and Riedel, D. and Lilie, H. and Jakobs, S. and van der Laan, M. and Daumke, O.
Science Advances 8 (35): eabo4946. 2 September 2022

Full-length spatial transcriptomics reveals the unexplored isoform diversity of the myocardium post-MI.
Boileau, E. and Li, X. and Naarmann-de Vries, I.S. and Becker, C. and Casper, R. and Altmüller, J. and Leuschner, F. and Dieterich, C.
Frontiers in Genetics 13 : 912572. 22 July 2022

Micro-RNA networks in T-cell prolymphocytic leukemia reflect T-cell activation and shape DNA damage response and survival pathways.
Braun, T. and Glass, M. and Wahnschaffe, L. and Otte, M. and Mayer, P. and Franitza, M. and Altmüller, J. and Hallek, M. and Hüttelmaier, S. and Schrader, A. and Herling, M.
Haematologica 107 (1): 187-200. January 2022

Noncanonical function of AGO2 augments T-cell receptor signaling in T-cell prolymphocytic leukemia.
Braun, T. and Stachelscheid, J. and Bley, N. and Oberbeck, S. and Otte, M. and Müller, T.A. and Wahnschaffe, L. and Glaß, M. and Ommer, K. and Franitza, M. and Gathof, B. and Altmüller, J. and Hallek, M. and Auguin, D. and Hüttelmaier, S. and Schrader, A. and Herling, M.
Cancer Research 82 (9): 1818-1831. 1 May 2022

Claudin-10a deficiency shifts proximal tubular Cl(-) permeability to cation selectivity via claudin-2 redistribution.
Breiderhoff, T. and Himmerkus, N. and Meoli, L. and Fromm, A. and Sewerin, S. and Kriuchkova, N. and Nagel, O. and Ladilov, Y. and Krug, S. and Quintanova, C. and Stumpp, M. and Garbe-Schönberg, D. and Westernströer, U. and Merkel, C. and Brinkhus, M. and Altmüller, J. and Schweiger, M. and Mueller, D. and Mutig, K. and Morawski, M. and Halbritter, J. and Milatz, S. and Bleich, M. and Günzel, D.
Journal of the American Society of Nephrology 33 (4): 699-717. April 2022

The histone H4 lysine 20 demethylase DPY-21 regulates the dynamics of condensin DC binding.
Breimann, L. and Morao, A.K. and Kim, J. and Jimenez, D.S. and Maryn, N. and Bikkasani, K. and Carrozza, M.J. and Albritton, S.E. and Kramer, M. and Street, L.A. and Cerimi, K. and Schumann, V.F. and Bahry, E. and Preibisch, S. and Woehler, A. and Ercan, S.
Journal of Cell Science 135 (2): jcs258818. January 2022

WARS1 and SARS1: two tRNA synthetases implicated in autosomal recessive microcephaly.
Bögershausen, N. and Krawczyk, H.E. and Jamra, R.A. and Lin, S.J. and Yigit, G. and Hüning, I. and Polo, A.M. and Vona, B. and Huang, K. and Schmidt, J. and Altmüller, J. and Luppe, J. and Platzer, K. and Dörgeloh, B.B. and Busche, A. and Biskup, S. and Mendes, M.I. and Smith, D.E.C. and Salomons, G.S. and Zibat, A. and Bültmann, E. and Nürnberg, P. and Spielmann, M. and Lemke, J.R. and Li, Y. and Zenker, M. and Varshney, G.K. and Hillen, H.S. and Kratz, C.P. and Wollnik, B.
Human Mutation 43 (10): 1454-1471. October 2022

Single cell‐ and spatial 'omics revolutionize physiology.
Conrad, T. and Altmüller, J.
Acta Physiologica : e13848. 2 June 2022

Combining callers improves the detection of copy number variants from whole-genome sequencing.
Coutelier, M. and Holtgrewe, M. and Jäger, M. and Flöttman, R. and Mensah, M.A. and Spielmann, M. and Krawitz, P. and Horn, D. and Beule, D. and Mundlos, S.
European Journal of Human Genetics 30 (2): 178-186. February 2022

Metabolic reprogramming of synovial fibroblasts in osteoarthritis by inhibition of pathologically overexpressed pyruvate dehydrogenase kinases.
Damerau, A. and Kirchner, M. and Pfeiffenberger, M. and Ehlers, L. and Do Nguyen, D.H. and Mertins, P. and Bartek, B. and Maleitzke, T. and Palmowski, Y. and Hardt, S. and Winkler, T. and Buttgereit, F. and Gaber, T.
Metabolic Engineering 72 : 116-132. July 2022

Highly multiplexed immune repertoire sequencing links multiple lymphocyte classes with severity of response to COVID-19.
Dannebaum, R. and Suwalski, P. and Asgharian, H. and Du Zhipei, G. and Lin, H. and Weiner, J. and Holtgrewe, M. and Thibeault, C. and Müller, M. and Wang, X. and Karadeniz, Z. and Saccomanno, J. and Doehn, J.M. and Hübner, R.H. and Hinzmann, B. and Blüher, A. and Siemann, S. and Telman, D. and Suttorp, N. and Witzenrath, M. and Hippenstiel, S. and Skurk, C. and Poller, W. and Sander, L.E. and Beule, D. and Kurth, F. and Guettouche, T. and Landmesser, U. and Berka, J. and Luong, K. and Rubelt, F. and Heidecker, B.
EClinicalMedicine 48 : 101438. June 2022

Detailed stratified GWAS analysis for severe COVID-19 in four European populations.
Degenhardt, F. and Ellinghaus, D. and Juzenas, S. and Lerga-Jaso, J. and Wendorff, M. and Maya-Miles, D. and Uellendahl-Werth, F. and ElAbd, H. and Rühlemann, M.C. and Arora, J. and Özer, O. and Lenning, O.B. and Myhre, R. and Vadla, M.S. and Wacker, E.M. and Wienbrandt, L. and Ortiz, A.B. and de Salazar, A. and Chercoles, A.G. and Palom, A. and Ruiz, A. and Garcia-Fernandez, A.E. and Blanco-Grau, A. and Mantovani, A. and Zanella, A. and Holten, A.R. and Mayer, A. and Bandera, A. and Cherubini, A. and Protti, A. and Aghemo, A. and Gerussi, A. and Ramirez, A. and Braun, A. and Nebel, A. and Barreira, A. and Lleo, A. and Teles, A. and Kildal, A.B. and Biondi, A. and Caballero-Garralda, A. and Ganna, A. and Gori, A. and Glück, A. and Lind, A. and Tanck, A. and Hinney, A. and Nolla, A.C. and Fracanzani, A.L. and Peschuck, A. and Cavallero, A. and Dyrhol-Riise, A.M. and Ruello, A. and Julià, A. and Muscatello, A. and Pesenti, A. and Voza, A. and Rando-Segura, A. and Solier, A. and Schmidt, 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Rodriguez-Frias, F. and Hanses, F. and Müller, F. and Hemmrich-Stanisak, G. and Bellani, G. and Grasselli, G. and Pezzoli, G. and Costantino, G. and Albano, G. and Cardamone, G. and Bellelli, G. and Citerio, G. and Foti, G. and Lamorte, G. and Matullo, G. and Baselli, G. and Kurihara, H. and Neb, H. and My, I. and Kurth, I. and Hernández, I. and Pink, I. and Rojas, I. and Galván-Femenia, I. and Holter, J.C. and Afset, J.E. and Heyckendorf, J. and Kässens, J. and Damås, J.K. and Rybniker, J. and Altmüller, J. and Ampuero, J. and Martín, J. and Erdmann, J. and Banales, J.M. and Badia, J.R. and Dopazo, J. and Schneider, J. and Bergan, J. and Barretina, J. and Walter, J. and Quero, J.H. and Goikoetxea, J. and Delgado, J. and Guerrero, J.M. and Fazaal, J. and Kraft, J. and Schröder, J. and Risnes, K. and Banasik, K. and Müller, K.E. and Gaede, K.I. and Garcia-Etxebarria, K. and Tonby, K. and Heggelund, L. and Izquierdo-Sanchez, L. and Bettini, L.Rachele and Sumoy, L. and Sander, L.E. and Lippert, L.J. and Terranova, L. and Nkambule, L. and Knopp, L. and Gustad, L.T. and Garbarino, L. and Santoro, L. and Téllez, L. and Roade, L. and Ostadreza, M. and Intxausti, M. and Kogevinas, M. and Riveiro-Barciela, M. and Berger, M.M. and Schaefer, M. and Niemi, M.E.K. and Gutiérrez-Stampa, M.A. and Carrabba, M. and Figuera Basso, M.E. and Valsecchi, M.G. and Hernandez-Tejero, M. and Vehreschild, M.J.G.T and Manunta, M. and Acosta-Herrera, M. and D'Angiò, M. and Baldini, M. and Cazzaniga, M. and Grimsrud, M.M. and Cornberg, M. and Nöthen, M.M. and Marquié, M. and Castoldi, M. and Cordioli, M. and Cecconi, M. and D'Amato, M. and Augustin, M. and Tomasi, M. and Boada, M. and Dreher, M. and Seilmaier, M.J. and Joannidis, M. and Wittig, M. and Mazzocco, M. and Ciccarelli, M. and Rodríguez-Gandía, M. and Bocciolone, M. and Miozzo, M. and Ayo, N.I. and Blay, N. and Chueca, N. and Montano, N. and Braun, N. and Ludwig, N. and Marx, N. and Martínez, N. and Cornely, O.A. and Witzke, O. and Palmieri, O. and Faverio, P. and Preatoni, P. and Bonfanti, P. and Omodei, P. and Tentorio, P. and Castro, P. and Rodrigues, P.M. and España, P.P. and Hoffmann, P. and Rosenstiel, P. and Schommers, P. and Suwalski, P. and Pablo, R. and Ferrer, R. and Bals, R. and Gualtierotti, R. and Gallego-Durán, R. and Nieto, R. and Carpani, R. and Morilla, R. and Badalamenti, S. and Haider, S. and Ciesek, S. and May, S. and Bombace, S. and Marsal, S. and Pigazzini, S. and Klein, S. and Pelusi, S. and Wilfling, S. and Bosari, S. and Volland, S. and Brunak, S. and Raychaudhuri, S. and Schreiber, S. and Heilmann-Heimbach, S. and Aliberti, S. and Ripke, S. and Dudman, S. and Wesse, T. and Zheng, T. and Bahmer, T. and Eggermann, T. and Illig, T. and Brenner, T. and Pumarola, T. and Feldt, T. and Folseraas, T. and Cejudo, T.G. and Landmesser, U. and Protzer, U. and Hehr, U. and Rimoldi, V. and Monzani, V. and Skogen, V. and Keitel, V. and Kopfnagel, V. and Friaza, V. and Andrade, V. and Moreno, V. and Albrecht, W. and Peter, W. and Poller, W. and Farre, X. and Yi, X. and Wang, X. and Khodamoradi, Y. and Karadeniz, Z. and Latiano, A. and Goerg, S. and Bacher, P. and Koehler, P. and Tran, F. and Zoller, H. and Schulte, E.C. and Heidecker, B. and Ludwig, K.U. and Fernández, J. and Romero-Gómez, M. and Albillos, A. and Invernizzi, P. and Buti, M. and Duga, S. and Bujanda, L. and Hov, J.R. and Lenz, T.L. and Asselta, R. and Cid, R. and Valenti, L. and Karlsen, T.H. and Cáceres, M. and Franke, A.
Human Molecular Genetics 31 (23): 3945-3966. 1 December 2022

A comparison of solvent-based extraction methods to assess the central carbon metabolites in mouse bone and muscle.
Dias, D.B. and Fritsche-Guenther, R. and Gutmann, F. and Duda, G.N. and Kirwan, J. and Poh, P.S.P.
Metabolites 12 (5): 453. 18 May 2022

Susceptibility to diet-induced obesity at thermoneutral conditions is independent of UCP1.
Dieckmann, S. and Strohmeyer, A. and Willershäuser, M. and Maurer, S.F. and Wurst, W. and Marschall, S. and Hrabě de Angelis, M. and Kühn, R. and Worthmann, A. and Fuh, M.M. and Heeren, J. and Köhler, N. and Pauling, J.K. and Klingenspor, M.
American Journal of Physiology Endocrinology and Metabolism 322 (2): E85-E100. February 2022

Identifying tumor cells at the single-cell level using machine learning.
Dohmen, J. and Baranovskii, A. and Ronen, J. and Uyar, B. and Franke, V. and Akalin, A.
Genome Biology 23 (1): 123. 30 May 2022

Therapeutic targeting of ATR in alveolar rhabdomyosarcoma.
Dorado Garcia, H. and Pusch, F. and Bei, Y. and von Stebut, J. and Ibáñez, G. and Guillan, K. and Imami, K. and Gürgen, D. and Rolff, J. and Helmsauer, K. and Meyer-Liesener, S. and Timme, N. and Bardinet, V. and Chamorro González, R. and MacArthur, I.C. and Chen, C.Y. and Schulz, J. and Wengner, A.M. and Furth, C. and Lala, B. and Eggert, A. and Seifert, G. and Hundsoerfer, P. and Kirchner, M. and Mertins, P. and Selbach, M. and Lissat, A. and Dubois, F. and Horst, D. and Schulte, J.H. and Spuler, S. and You, D. and Dela Cruz, F. and Kung, A.L. and Haase, K. and Di Virgilio, M. and Scheer, M. and Ortiz, M.V. and Henssen, A.G.
Nature Communications 13 (1): 4297. 25 July 2022

Increase in mental disorders during the COVID-19 pandemic -- the role of occupational and financial strains. An analysis of the German National Cohort (NAKO) Study.
Dragano, N. and Reuter, M. and Peters, A. and Engels, M. and Schmidt, B. and Greiser, K.H. and Bohn, B. and Riedel-Heller, S. and Karch, A. and Mikolajczyk, R. and Krause, G. and Lang, O. and Panreck, L. and Rietschel, M. and Brenner, H. and Fischer, B. and Franzke, C.W. and Gastell, S. and Holleczek, B. and Jöckel, K.H. and Kaaks, R. and Keil, T. and Kluttig, A. and Kuß, O. and Legath, N. and Leitzmann, M. and Lieb, W. and Meinke-Franze, C. and Michels, K.B. and Obi, N. and Pischon, T. and Feinkohl, I. and Rospleszcz, S. and Schikowski, T. and Schulze, M.B. and Stang, A. and Völzke, H. and Willich, S.N. and Wirkner, K. and Zeeb, H. and Ahrens, W. and Berger, K.
Deutsches Arzteblatt International 119 (11): 179-187. 18 March 2022

Uncovering the contribution of moderate-penetrance susceptibility genes to breast cancer by whole-exome sequencing and targeted enrichment sequencing of candidate genes in women of European ancestry.
Dumont, M. and Weber-Lassalle, N. and Joly-Beauparlant, C. and Ernst, C. and Droit, A. and Feng, B.J. and Dubois, S. and Collin-Deschesnes, A.C. and Soucy, P. and Vallée, M. and Fournier, F. and Lemaçon, A. and Adank, M.A. and Allen, J. and Altmüller, J. and Arnold, N. and Ausems, M.G.E.M. and Berutti, R. and Bolla, M.K. and Bull, S. and Carvalho, S. and Cornelissen, S. and Dufault, M.R. and Dunning, A.M. and Engel, C. and Gehrig, A. and Geurts-Giele, W.R.R. and Gieger, C. and Green, J. and Hackmann, K. and Helmy, M. and Hentschel, J. and Hogervorst, F.B.L. and Hollestelle, A. and Hooning, M.J. and Horváth, J. and Ikram, M.A. and Kaulfuß, S. and Keeman, R. and Kuang, D. and Luccarini, C. and Maier, W. and Martens, J.W.M. and Niederacher, D. and Nürnberg, P. and Ott, C.E. and Peters, A. and Pharoah, P.D.P. and Ramirez, A. and Ramser, J. and Riedel-Heller, S. and Schmidt, G. and Shah, M. and Scherer, M. and Stäbler, A. and Strom, T.M. and Sutter, C. and Thiele, H. and van Asperen, C.J. and van der Kolk, L. and van der Luijt, R.B. and Volk, A.E. and Wagner, M. and Waisfisz, Q. and Wang, Q. and Wang-Gohrke, S. and Weber, B.H.F. and Devilee, P. and Tavtigian, S. and Bader, G.D. and Meindl, A. and Goldgar, D.E. and Andrulis, I.L. and Schmutzler, R.K. and Easton, D.F. and Schmidt, M.K. and Hahnen, E. and Simard, J.
Cancers 14 (14): 3363. 11 July 2022

Mechanical forces couple bone matrix mineralization with inhibition of angiogenesis to limit adolescent bone growth.
Dzamukova, M. and Brunner, T.M. and Miotla-Zarebska, J. and Heinrich, F. and Brylka, L. and Mashreghi, M.F. and Kusumbe, A. and Kühn, R. and Schinke, T. and Vincent, T.L.. and Löhning, M.
Nature Communications 13 (1): 3059. 1 June 2022

C/EBPβ regulates lipid metabolism and Pparg isoform 2 expression in alveolar macrophages.
Dörr, D. and Obermayer, B. and Weiner, J.M. and Zimmermann, K. and Anania, C. and Wagner, L.K. and Lyras, E.M. and Sapozhnikova, V. and Lara-Astiaso, D. and Prósper, F. and Lang, R. and Lupiáñez, D.G. and Beule, D. and Höpken, U.E. and Leutz, A. and Mildner, A.
Science Immunology 7 (75): eabj0140. September 2022

Protective alpha1-antitrypsin effects in autoimmune vasculitis are compromised by methionine oxidation.
Ebert, M.J. and Jerke, U. and Eulenberg-Gustavus, C. and Kling, L. and Jenne, D.E. and Kirchner, M. and Mertins, P. and Bieringer, M. and Elitok, S. and Eckardt, K.U. and Schreiber, A. and Salama, A.D. and Kettritz, R.
Journal of Clinical Investigation 132 (23): e160089. 1 December 2022

The anti-glucocorticoid receptor antibody clone 5E4: raising awareness of unspecific antibody binding.
Ehlers, L. and Kirchner, M. and Mertins, P. and Strehl, C. and Buttgereit, F. and Gaber, T.
International Journal of Molecular Sciences 23 (9): 5049. 2 May 2022

Mutant phosphodiesterase 3A protects from hypertension-induced cardiac damage.
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An uncertainty-aware, shareable, and transparent neural network architecture for brain-age modeling.
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Science Advances 8 (1): eabg9471. 7 January 2022

Rational design of highly potent, selective, and bioavailable SGK1 protein kinase inhibitors for the treatment of osteoarthritis.
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Robust induction of primordial germ cells of white rhinoceros on the brink of extinction.
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Inflammation and convergent placenta gene co-option contributed to a novel reproductive tissue.
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Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury.
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Mathematical and bioinformatic tools for cell tracking.
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Uncoupling the excitatory amino acid transporter 2 from its C-terminal interactome restores synaptic glutamate clearance at corticostriatal synapses and alleviates mutant huntingtin-induced hypokinesia.
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Human alveolar progenitors generate dual lineage bronchioalveolar organoids.
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Inflammation in children with chronic kidney disease linked to gut dysbiosis and metabolite imbalance.
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Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021.
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Human lungs show limited permissiveness for SARS-CoV-2 due to scarce ACE2 levels but virus-induced expansion of inflammatory macrophages.
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H3.3K27M mutation is not a suitable target for immunotherapy in HLA-A2(+) patients with diffuse midline glioma.
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Analyses of circRNA expression throughout the light-dark cycle reveal a strong regulation of (Cdr1as), associated with light entrainment in the SCN.
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Non-redundant functions of group 2 innate lymphoid cells.
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Prediction of activity-related energy expenditure under free-living conditions using accelerometer-derived physical activity.
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DNA methylation-based classification of sinonasal tumors.
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A conserved long-distance telomeric silencing mechanism suppresses mTOR signaling in aging human fibroblasts.
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Science Advances 8 (33): eabk2814. August 2022

(RB1)-negative retinal organoids display proliferation of cone photoreceptors and loss of retinal differentiation.
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Automated imaging-based abdominal organ segmentation and quality control in 20,000 participants of the UK Biobank and German National Cohort Studies.
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Scientific Reports 12 (1): 18733. 4 November 2022

Nonproductive exposure of PBMCs to SARS‐CoV ‐2 induces cell‐intrinsic innate immune responses.
Kazmierski, J. and Friedmann, K. and Postmus, D. and Emanuel, J. and Fischer, C. and Jansen, J. and Richter, A. and Bosquillon de Jarcy, L. and Schüler, C. and Sohn, M. and Sauer, S. and Drosten, C. and Saliba, A.E. and Sander, L.E. and Müller, M.A. and Niemeyer, D. and Goffinet, C.
Molecular Systems Biology 18 (8): e10961. 1 August 2022

Placental transcriptome profiling in subtypes of diabetic pregnancies is strongly confounded by fetal sex.
Kedziora, S.M. and Obermayer, B. and Sugulle, M. and Herse, F. and Kräker, K. and Haase, N. and Langmia, I.M. and Müller, D.N. and Staff, A.C. and Beule, D. and Dechend, R.
International Journal of Molecular Sciences 23 (23): 15388. 6 December 2022

Npl3 functions in mRNP assembly by recruitment of mRNP components to the transcription site and their transfer onto the mRNA.
Keil, P. and Wulf, A. and Kachariya, N. and Reuscher, S. and Hühn, K. and Silbern, I. and Altmüller, J. and Keller, M. and Stehle, R. and Zarnack, K. and Sattler, M. and Urlaub, H. and Sträßer, K.
Nucleic Acids Research : gkac1206. 30 December 2022

Npl3 functions in mRNP assembly by recruitment of mRNP components to the transcription site and their transfer onto the mRNA.
Keil, P. and Wulf, A. and Kachariya, N. and Reuscher, S. and Hühn, K. and Silbern, I. and Altmüller, J. and Stehle, R. and Zarnack, K. and Sattler, M. and Urlaub, H. and Sträßer, K.
bioRxiv : 2022.07.22.501171. 22 July 2022

Quality assurance and quality control reporting in untargeted metabolic phenotyping: mQACC recommendations for analytical quality management.
Kirwan, J.A. and Gika, H. and Beger, R.D. and Bearden, D. and Dunn, W.B. and Goodacre, R. and Theodoridis, G. and Witting, M. and Yu, L.R. and Wilson, I.D.
Metabolomics 18 (9): 70. 27 August 2022

Association of ultra-rare coding variants with genetic generalized epilepsy: a case-control whole exome sequencing study.
Koko, M. and Motelow, J.E. and Stanley, K.E. and Bobbili, D.R. and Dhindsa, R.S. and May, P.
Epilepsia 63 (3): 723-735. March 2022

Regional gene expression patterns are associated with task-specific brain activation during reward and emotion processing measured with functional MRI.
Komorowski, A. and Murgaš, M. and Vidal, R. and Singh, A. and Gryglewski, G. and Kasper, S. and Wiltfang, J. and Lanzenberger, R. and Goya-Maldonado, R.
Human Brain Mapping 43 (17): 5266-5280. 1 December 2022

Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning.
Kopp, W. and Akalin, A. and Ohler, U.
Nature Machine Intelligence 4 (2): 162-168. February 2022

15-keto-Prostaglandin E(2) exhibits bioactive role by modulating glomerular cytoarchitecture through EP2/EP4 receptors.
Kourpa, A. and Kaiser-Graf, D. and Sporbert, A. and Philippe, A. and Catar, R. and Rothe, M. and Mangelsen, E. and Schulz, A. and Bolbrinker, J. and Kreutz, R. and Panáková, D.
Life Sciences 310 : 121114. 1 December 2022

Computational approaches to predicting treatment response to obesity using neuroimaging.
Kozarzewski, L. and Maurer, L. and Mähler, A. and Spranger, J. and Weygandt, M.
Reviews in Endocrine & Metabolic Disorders 23 (4): 773–805. August 2022

A deletion containing a CTCF-element in intron 8 of the Bbs7 gene is partially responsible for juvenile obesity in the Berlin Fat Mouse.
Krause, F. and Mohebian, K. and Delpero, M. and Hesse, D. and Kuehn, R. and Arends, D. and Brockmann, G.A.
Mammalian Genome 33 (3): 465–470. September 2022

Paracrine interleukin 6 induces cerebral remodeling at early stages after unilateral common carotid artery occlusion in mice.
Kuffner, M.T.C. and Koch, S.P and Kirchner, M. and Mueller, S. and Lips, J. and An, J. and Mertins, P. and Dirnagl, U. and Endres, M. and Boehm-Sturm, P. and Harms, C. and Hoffmann, C.J.
Frontiers in Cardiovascular Medicine 8 : 805095. 27 January 2022

Genome engineering in rodents - status quo and perspectives.
Kühn, R.
Laboratory Animals 56 (1): 83-87. 1 February 2022

Magnetic field-induced interactions between phones containing magnets and cardiovascular implantable electronic devices: Flip it to be safe?
Lacour, P. and Dang, P.L. and Heinzel, F.R. and Parwani, A.S. and Bähr, F. and Kucher, A. and Hohendanner, F. and Niendorf, T. and Rahimi, F. and Saha, N. and Han, H. and Rubarth, K. and Sherif, M. and Boldt, L.H. and Pieske, B. and Blaschke, F.
Heart Rhythm 19 (3): 372-380. March 2022

Interleukin 8 in postoperative delirium - preliminary findings from two studies.
Lammers-Lietz, F. and Akyuz, L. and Feinkohl, I. and Lachmann, C. and Pischon, T. and Volk, H.D. and von Häfen, C. and Yürek, F. and Winterer, G. and Spies, C.D.
Brain Behavior & Immunity - Health 20 : 100419. March 2022

Alport syndrome and autosomal dominant tubulointerstitial kidney disease frequently underlie end stage renal disease of unknown origin - a single center analysis.
Leenen, E. and Erger, F. and Altmüller, J. and Wenzel, A. and Thiele, H. and Harth, A. and Tschernoster, N. and Lokhande, S. and Joerres, A. and Becker, J.U. and Ekici, A. and Huettel, B. and Beck, B. and Weidemann, A.
Nephrology Dialysis Transplantation 37 (10): 1895-1905. 22 September 2022

Spatio-temporal, optogenetic control of gene expression in organoids.
Legnini, I. and Emmenegger, L. and Zappulo, A. and Wurmus, R. and Oliveras Martinez, A. and Cerda Jara, C. and Boltengagen, A. and Hessler, T. and Mastrobuoni, G. and Rybak-Wolf, A. and Kempa, S. and Zinzen, R.P. and Woehler, A. and Rajewsky, N.
bioRxiv : 2021.09.26.461850v3. 9 February 2022

A novel homozygous synonymous variant further expands the phenotypic spectrum of POLR3A-related pathologies.
Lessel, D. and Rading, K. and Campbell, S.E. and Thiele, H. and Altmüller, J. and Gordon, L.B. and Kubisch, C.
American Journal of Medical Genetics A 188 (1): 216-223. January 2022

Introducing the Molecular Pharmaceutics special issue on “tiny things, big impact: nanomedicine in Canada”.
Li, S.D. and Wasan, E. and Bally, M. and Hedtrich, S.
Molecular Pharmaceutics 19 (6): 1657-1658. 6 June 2022

High-content analysis of neuronal morphology in human iPSC-derived neurons.
Lickfett, S. and Menacho, C. and Zink, A. and Telugu, N.S. and Beller, M. and Diecke, S. and Cambridge, S. and Prigione, A.
STAR Protocols 3 (3): 101567. 16 September 2022

Diffusion-weighted magnetic resonance imaging in rat kidney using two-dimensional navigated, interleaved echo-planar imaging at 7.0 T.
Liu, Q. and Xu, Z. and Zhao, K. and Hoge, W.S. and Zhang, X. and Mei, Y. and Lu, Q. and Niendorf, T. and Feng, Y.
NMR in Biomedicine 35 (5): e4652. May 2022

Tongue immune compartment analysis reveals spatial macrophage heterogeneity.
Lyras, E.M. and Zimmermann, K. and Wagner, L.K. and Dörr, D. and Klose, C.S.N and Fischer, C. and Jung, S. and Yona, S. and Hovav, A.H. and Stenzel, W. and Dommerich, S. and Conrad, T. and Leutz, A. and Mildner, A.
eLife 11 : 77490. 24 June 2022

Impact of metabolic stress induced by diets, aging and fasting on tissue oxygen consumption.
Mackert, O. and Wirth, E.K. and Sun, R. and Winkler, J. and Liu, A. and Renko, K. and Kunz, S. and Spranger, J. and Brachs, S.
Molecular Metabolism 64 : 101563. October 2022

The centrosomal protein 83 (CEP83) regulates human pluripotent stem cell differentiation towards the kidney lineage.
Mansour, F. and Hinze, C. and Telugu, N.S. and Kresoja, J. and Shaheed, I.B. and Mosimann, C. and Diecke, S. and Schmidt-Ott, K.M.
eLife 11 : e80165. 12 October 2022

Genomic variants reducing expression of two endocytic receptors in 46,XY differences of sex development.
Marko, H.L. and Hornig, N.C. and Betz, R.C. and Holterhus, P.M. and Altmüller, J. and Thiele, H. and Fabiano, M. and Schweikert, H.U. and Braun, D. and Schweizer, U.
Human Mutation 43 (3): 420-433. March 2022

ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise.
May, V. and Koch, L. and Fischer-Zirnsak, B. and Horn, D. and Gehle, P. and Kornak, U. and Beule, D. and Holtgrewe, M.
Bioinformatics 38 (16): 3871-3876. 15 August 2022

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos.
McGarvey, A.C. and Kopp, W. and Vučićević, D. and Mattonet, K. and Kempfer, R. and Hirsekorn, A. and Bilić, I. and Gil, M. and Trinks, A. and Merks, A.M. and Panáková, D. and Pombo, A. and Akalin, A. and Junker, J.P. and Stainier, D.Y.R. and Garfield, D. and Ohler, U. and Lacadie, S.A.
Cell Genomics 2 (1): 100083. 13 January 2022

Reliable assessment of telomere maintenance mechanisms in neuroblastoma.
Meeser, A. and Bartenhagen, C. and Werr, L. and Hellmann, A.M. and Kahlert, Y. and Hemstedt, N. and Nürnberg, P. and Altmüller, J. and Ackermann, S. and Hero, B. and Simon, T. and Peifer, M. and Fischer, M. and Rosswog, C.
Cell and Bioscience 12 (1): 160. 24 September 2022

Compound interaction screen on a photoactivatable cellulose membrane (CISCM) identifies drug targets.
Melder, F.T. and Lindemann, P. and Welle, A. and Trouillet, V. and Heißler, S. and Nazaré, M. and Selbach, M.
ChemMedChem 17 (19): e202200346. 6 October 2022

Cryo-electron tomography reveals structural insights into the membrane remodeling mode of dynamin-like EHD filaments.
Melo, A.A. and Sprink, T. and Noel, J.K. and Vázquez-Sarandeses, E. and van Hoorn, C. and Mohd, S. and Loerke, J. and Spahn, C.M.T. and Daumke, O.
Nature Communications 13 (1): 7641. 10 December 2022

Generation of hiPSC-derived skeletal muscle cells: exploiting the potential of skeletal muscle-derived hiPSCs.
Metzler, E. and Escobar, H. and Sunaga-Franze, D.Y. and Sauer, S. and Diecke, S. and Spuler, S.
Biomedicines 10 (5): 1204. 23 May 2022

Generation of induced pluripotent stem cells from three individuals with Huntington's disease.
Miller, D.C. and Lisowski, P. and Lickfett, S. and Mlody, B. and Bünning, M. and Genehr, C. and Ulrich, C. and Wanker, E.E. and Diecke, S. and Priller, J. and Prigione, A.
Stem Cell Research 65 : 102976. December 2022

Genomic basis of syndromic short stature in an Algerian patient cohort.
Moosa, S. and Chentli, F. and Altmüller, J. and Bögershausen, N. and Nürnberg, P. and Yigit, G. and Li, Y. and Wollnik, B.
American Journal of Medical Genetics A 188 (2): 606-612. February 2022

Political knowledge and misinformation in the era of social media: evidence from the 2015 UK election.
Munger, K. and Egan, P.J. and Nagler, J. and Ronen, J. and Tucker, J.
British Journal of Political Science 52 (1): 107 - 127. January 2022

Increased salt intake decreases diet-induced thermogenesis in healthy volunteers: a randomized placebo-controlled study.
Mähler, A. and Klamer, S. and Maifeld, A. and Bartolomaeus, H. and Markó, L. and Chen, C.Y. and Forslund, S.K. and Boschmann, M. and Müller, D.N. and Wilck, N.
Nutrients 14 (2): 253. 7 January 2022

Mediterranean diet and atrial fibrillation: lessons learned from the AFHRI case-control study.
Neumann, F.A. and Jagemann, B. and Makarova, N. and Börschel, C.S. and Aarabi, G. and Gutmann, F. and Schnabel, R.B. and Zyriax, B.C.
Nutrients 14 (17): 3615. 1 September 2022

Candesartan does not activate PPAR(γ) and its target genes in early gestation trophoblasts.
Neuper, L. and Kummer, D. and Forstner, D. and Guettler, J. and Ghaffari-Tabrizi-Wizsy, N. and Fischer, C. and Juch, H. and Nonn, O. and Gauster, M.
International Journal of Molecular Sciences 23 (20): 12326. October 2022

Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myeloma.
Ng, Y.L.D. and Ramberger, E. and Bohl, S.R. and Dolnik, A. and Steinebach, C. and Conrad, T. and Müller, S. and Popp, O. and Kull, M. and Haji, M. and Gütschow, M. and Döhner, H. and Walther, W. and Keller, U. and Bullinger, L. and Mertins, P. and Krönke, J.
Nature Communications 13 (1): 1009. 23 February 2022

Generation of a NES-mScarlet red fluorescent reporter human iPSC line for live cell imaging and flow cytometric analysis and sorting using CRISPR-Cas9-mediated gene editing.
Nouri, P. and Zimmer, A. and Brüggemann, S. and Friedrich, R. and Kühn, R. and Prakash, N.
Cells 11 (2): 268. 13 January 2022

Urbanization promotes specific bacteria in freshwater microbiomes including potential pathogens.
Numberger, D. and Zoccarato, L. and Woodhouse, J. and Ganzert, L. and Sauer, S. and García Márquez, J.R. and Domisch, S. and Grossart, H.P. and Greenwood, A.D.
Science of the Total Environment 845 : 157321. 1 November 2022

Effect of atmospheric aging on soot particle toxicity in lung cell models at the air-liquid interface: differential toxicological impacts of biogenic and anthropogenic secondary organic aerosols (SOAs).
Offer, S. and Hartner, E. and Di Bucchianico, S. and Bisig, C. and Bauer, S. and Pantzke, J. and Zimmermann, E.J. and Cao, X. and Binder, S. and Kuhn, E. and Huber, A. and Jeong, S. and Käfer, U. and Martens, P. and Mesceriakovas, A. and Bendl, J. and Brejcha, R. and Buchholz, A. and Gat, D. and Hohaus, T. and Rastak, N. and Jakobi, G. and Kalberer, M. and Kanashova, T. and Hu, Y. and Ogris, C. and Marsico, A. and Theis, F. and Pardo, M. and Gröger, T. and Oeder, S. and Orasche, J. and Paul, A. and Ziehm, T. and Zhang, Z.H. and Adam, T. and Sippula, O. and Sklorz, M. and Schnelle-Kreis, J. and Czech, H. and Kiendler-Scharr, A. and Rudich, Y. and Zimmermann, R.
Environmental Health Perspectives 130 (2): 27003. 3 February 2022

Lack of evidence for participation of TMEM150C in sensory mechanotransduction.
Ojeda-Alonso, J. and Bégay, V. and Garcia-Contreras, J.A. and Campos-Pérez, A.F. and Purfürst, B. and Lewin, G.R.
Journal of General Physiology 154 (12): e202213098. 5 December 2022

Exercise blood-drop metabolic profiling links metabolism with perceived exertion.
Opialla, T. and Gollasch, B. and Kuich, P.H.J.L. and Klug, L. and Rahn, G. and Busjahn, A. and Spuler, S. and Boschmann, M. and Kirwan, J.A. and Luft, F.C. and Kempa, S.
Frontiers in Molecular Biosciences 9 : 1042231. 21 December 2022

Epithelial coxsackievirus adenovirus receptor promotes house dust mite-induced lung inflammation.
Ortiz-Zapater, E. and Bagley, D.C. and Hernandez, V.L. and Roberts, L.B. and Maguire, T.J.A. and Voss, F. and Mertins, P. and Kirchner, M. and Peset-Martin, I. and Woszczek, G. and Rosenblatt, J. and Gotthardt, M. and Santis, G. and Parsons, M.
Nature Communications 13 (1): 6407. 27 October 2022

A computational model for prediction of ferritin and haemoglobin levels in blood donors.
Paalvast, Y. and Moazzen, S. and Sweegers, M. and Hogema, B. and Janssen, M. and van den Hurk, K.
British Journal of Haematology 199 (1): 143-152. October 2022

Exposure to naphthalene and β-pinene-derived secondary organic aerosol induced divergent changes in transcript levels of BEAS-2B cells.
Pardo, M. and Offer, S. and Hartner, E. and Di Bucchianico, S. and Bisig, C. and Bauer, S. and Pantzke, J. and Zimmermann, E.J. and Cao, X. and Binder, S. and Kuhn, E. and Huber, A. and Jeong, S. and Käfer, U. and Schneider, E. and Mesceriakovas, A. and Bendl, J. and Brejcha, R. and Buchholz, A. and Gat, D. and Hohaus, T. and Rastak, N. and Karg, E. and Jakobi, G. and Kalberer, M. and Kanashova, T. and Hu, Y. and Ogris, C. and Marsico, A. and Theis, F. and Shalit, T. and Gröger, T. and Rüger, C.P. and Oeder, S. and Orasche, J. and Paul, A. and Ziehm, T. and Zhang, Z.H. and Adam, T. and Sippula, O. and Sklorz, M. and Schnelle-Kreis, J. and Czech, H. and Kiendler-Scharr, A. and Zimmermann, R. and Rudich, Y.
Environment International 166 : 107366. 21 June 2022 (In Press)

A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.
Patsalos, A. and Halasz, L. and Medina-Serpas, M.A. and Berger, W.K. and Daniel, B. and Tzerpos, P. and Kiss, M. and Nagy, G. and Fischer, C. and Simandi, Z. and Varga, T. and Nagy, L.
Journal of Experimental Medicine 219 (1): e20210420. 3 January 2022

Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infection.
Pekayvaz, K. and Leunig, A. and Kaiser, R. and Joppich, M. and Brambs, S. and Janjic, A. and Popp, O. and Nixdorf, D. and Fumagalli, V. and Schmidt, N. and Polewka, V. and Anjum, A. and Knottenberg, V. and Eivers, L. and Wange, L.E. and Gold, C. and Kirchner, M. and Muenchhoff, M. and Hellmuth, J.C. and Scherer, C. and Rubio-Acero, R. and Eser, T. and Deák, F. and Puchinger, K. and Kuhl, N. and Linder, A. and Saar, K. and Tomas, L. and Schulz, C. and Wieser, A. and Enard, W. and Kroidl, I. and Geldmacher, C. and von Bergwelt-Baildon, M. and Keppler, O.T. and Munschauer, M. and Iannacone, M. and Zimmer, R. and Mertins, P. and Hubner, N. and Hoelscher, M. and Massberg, S. and Stark, K. and Nicolai, L.
Nature Communications 13 (1): 1018. 23 February 2022

A pulmonologist's guide to perform and analyse cross-species single lung cell transcriptomics.
Pennitz, P. and Kirsten, H. and Friedrich, V.D. and Wyler, E. and Goekeri, C. and Obermayer, B. and Heinz, G.A. and Mashreghi, M.F. and Büttner, M. and Trimpert, J. and Landthaler, M. and Suttorp, N. and Hocke, A.C. and Hippenstiel, S. and Tönnies, M. and Scholz, M. and Kuebler, W.M. and Witzenrath, M. and Hoenzke, K. and Nouailles, G.
European Respiratory Review 31 (165): 220056. 30 September 2022

Serine biosynthesis as a novel therapeutic target for dilated cardiomyopathy.
Perea-Gil, I. and Seeger, T. and Bruyneel, A.A.N. and Termglinchan, V. and Monte, E. and Lim, E.W. and Vadgama, N. and Furihata, T. and Gavidia, A.A. and Arthur Ataam, J. and Bharucha, N. and Martinez-Amador, N. and Ameen, M. and Nair, P. and Serrano, R. and Kaur, B. and Feyen, D.A.M. and Diecke, S. and Snyder, M.P. and Metallo, C.M. and Mercola, M. and Karakikes, I.
European Heart Journal 43 (36): 3477-3489. 21 September 2022

Framework and baseline examination of the German National Cohort (NAKO).
Peters, A. and Peters, A. and Greiser, K.H. and Göttlicher, S. and Ahrens, W. and Albrecht, M. and Bamberg, F. and Bärnighausen, T. and Becher, H. and Berger, K. and Beule, A. and Boeing, H. and Bohn, B. and Bohnert, K. and Braun, B. and Brenner, H. and Bülow, R. and Castell, S. and Damms-Machado, A. and Dörr, M. and Ebert, N. and Ecker, M. and Emmel, C. and Fischer, B. and Franzke, C.W. and Gastell, S. and Giani, G. and Günther, M. and Günther, K. and Günther, K.P. and Haerting, J. and Haug, U. and Heid, I.M. and Heier, M. and Heinemeyer, D. and Hendel, T. and Herbolsheimer, F. and Hirsch, J. and Hoffmann, W. and Holleczek, B. and Hölling, H. and Hörlein, A. and Jöckel, K.H. and Kaaks, R. and Karch, A. and Karrasch, S. and Kartschmit, N. and Kauczor, H.U. and Keil, T. and Kemmling, Y. and Klee, B. and Klüppelholz, B. and Kluttig, A. and Kofink, L. and Köttgen, A. and Kraft, D. and Krause, G. and Kretz, L. and Krist, L. and Kühnisch, J. and Kuß, O. and Legath, N. and Lehnich, A.T. and Leitzmann, M. and Lieb, W. and Linseisen, J. and Loeffler, M. and Macdonald, A. and Maier-Hein, K.H. and Mangold, N. and Meinke-Franze, C. and Meisinger, C. and Melzer, J. and Mergarten, B. and Michels, K.B. and Mikolajczyk, R. and Moebus, S. and Mueller, U. and Nauck, M. and Niendorf, T. and Nikolaou, K. and Obi, N. and Ostrzinski, S. and Panreck, L. and Pigeot, I. and Pischon, T. and Pschibul-Thamm, I. and Rathmann, W. and Reineke, A. and Roloff, S. and Rujescu, D. and Rupf, S. and Sander, O. and Schikowski, T. and Schipf, S. and Schirmacher, P. and Schlett, C.L. and Schmidt, B. and Schmidt, G. and Schmidt, M. and Schöne, G. and Schulz, H. and Schulze, M.B. and Schweig, A. and Sedlmeier, A.M. and Selder, S. and Six-Merker, J. and Sowade, R. and Stang, A. and Stegle, O. and Steindorf, K. and Stübs, G. and Swart, E. and Teismann, H. and Thiele, I. and Thierry, S. and Ueffing, M. and Völzke, H. and Waniek, S. and Weber, A. and Werner, N. and Wichmann, H.E. and Willich, S.N. and Wirkner, K. and Wolf, K. and Wolff, R. and Zeeb, H. and Zinkhan, M. and Zschocke, J.
European Journal of Epidemiology 37 (10): 1107-1124. October 2022

A RAS-independent biomarker panel to reliably predict response to MEK inhibition in colorectal cancer.
Pfohl, U. and Loskutov, J. and Bashir, S. and Kühn, R. and Herter, P. and Templin, M. and Mamlouk, S. and Belanov, S. and Linnebacher, M. and Bürtin, F. and Vetter, M. and Reinhard, C. and Wedeken, L. and Regenbrecht, C.R.A.
Cancers 14 (13): 3252. 1 July 2022

Pre-diagnostic circulating resistin concentrations are not associated with colorectal cancer risk in the European Prospective Investigation into Cancer and Nutrition study.
Pham, T.T. and Nimptsch, K. and Aleksandrova, K. and Jenab, M. and Reichmann, R. and Wu, K. and Tjønneland, A. and Kyrø, C. and Schulze, M.B. and Kaaks, R. and Katzke, V. and Palli, D. and Pasanisi, F. and Ricceri, F. and Tumino, R. and Krogh, V. and Roodhart, J. and Castilla, J. and Sánchez, M.J. and Colorado-Yohar, S.M. and Harbs, J. and Rutegård, M. and Papier, K. and Aglago, E.K. and Dimou, N. and Mayen-Chacon, A.L. and Weiderpass, E. and Pischon, T.
Cancers 14 (22): 5499. 9 November 2022

RNA modification mapping with JACUSA2.
Piechotta, M. and Naarmann-de Vries, I.S. and Wang, Q. and Altmüller, J. and Dieterich, C.
Genome Biology 23 (1): 115. 16 May 2022

Long-term imaging reveals behavioral plasticity during C. elegans dauer exit.
Preusser, F. and Neuschulz, A. and Junker, J.P. and Rajewsky, N. and Preibisch, S.
bioRxiv : 2022.04.25.489360v1. 26 April 2022

Sustainable low-field cardiovascular magnetic resonance in changing healthcare systems.
Qin, C. and Murali, S. and Lee, E. and Supramaniam, V. and Hausenloy, D.J. and Obungoloch, J. and Brecher, J. and Lin, R. and Ding, H. and Akudjedu, T.N. and Anazodo, U.C. and Jagannathan, N.R. and Ntusi, N.A.B. and Simonetti, O.P. and Campbell-Washburn, A.E. and Niendorf, T. and Mammen, R. and Adeleke, S.
European Heart Journal - Cardiovascular Imaging : jeab286. 14 February 2022

Radiofrequency antenna helmet array for thermal magnetic resonance of brain tumours at 297 MHz.
Rahimi, F. and Berangi, M. and Eigentler, T.W. and Nurzed, B. and Millward, J.M. and Schuhmann, R. and Niendorf, T.
In: 2022 3rd URSI Atlantic and Asia Pacific Radio Science Meeting (AT-AP-RASC), 30 May - 04 Jun 2022, Gran Canaria, Spain. 6 July 2022

EBAG9 controls CD8(+) T cell memory formation responding to tumor challenge in mice.
Rehm, A. and Wirges, A. and Hoser, D. and Fischer, C. and Herda, S. and Gerlach, K. and Sauer, S. and Willimsky, G. and Hoepken, U.E.
JCI Insight 7 (11): e155534. 8 June 2022

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies.
Reichart, D. and Lindberg, E.L. and Maatz, H. and Miranda, A.M.A. and Viveiros, A. and Shvetsov, N. and Gärtner, A. and Nadelmann, E.R. and Lee, M. and Kanemaru, K. and Ruiz-Orera, J. and Strohmenger, V. and DeLaughter, D.M. and Patone, G. and Zhang, H. and Woehler, A. and Lippert, C. and Kim, Y. and Adami, E. and Gorham, J.M. and Barnett, S.N. and Brown, K. and Buchan, R.J. and Chowdhury, R.A. and Constantinou, C. and Cranley, J. and Felkin, L.E. and Fox, H. and Ghauri, A. and Gummert, J. and Kanda, M. and Li, R. and Mach, L. and McDonough, B. and Samari, S. and Shahriaran, F. and Yapp, C. and Stanasiuk, C. and Theotokis, P.I. and Theis, F.J. and van den Bogaerdt, A. and Wakimoto, H. and Ware, J.S. and Worth, C.L. and Barton, P.J.R. and Lee, Y.A. and Teichmann, S.A. and Milting, H. and Noseda, M. and Oudit, G.Y. and Heinig, M. and Seidman, J.G. and Hubner, N. and Seidman, C.E.
Science 377 (6606): eabo1984. 5 August 2022

MAGED2 controls vasopressin-induced aquaporin-2 expression in collecting duct cells.
Reusch, B. and Bartram, M.P. and Dafinger, C. and Palacio-Escat, N. and Wenzel, A. and Fenton, R.A. and Saez-Rodriguez, J. and Schermer, B. and Benzing, T. and Altmüller, J. and Beck, B.B. and Rinschen, M.M.
Journal of Proteomics 252 : 104424. 10 February 2022

Biallelic PAN2 variants in individuals with a syndromic neurodevelopmental disorder and multiple congenital anomalies.
Reuter, M.S. and Zech, M. and Hempel, M. and Altmüller, J. and Heung, T. and Pölsler, L. and Santer, R. and Thiele, H. and Trost, B. and Kubisch, C. and Scherer, S.W. and Rudnik-Schöneborn, S. and Bassett, A.S. and Lessel, D.
European Journal of Human Genetics 30 (5): 611-618. May 2022

Feasibility and outcome of reproducible clinical interpretation of high-dimensional molecular data: a comparison of two molecular tumor boards.
Rieke, D.T. and de Bortoli, T. and Horak, P. and Lamping, M. and Benary, M. and Jelas, I. and Rüter, G. and Berger, J. and Zettwitz, M. and Kagelmann, N. and Kind, A. and Fabian, F. and Beule, D. and Glimm, H. and Brors, B. and Stenzinger, A. and Fröhling, S. and Keilholz, U.
BMC Medicine 20 (1): 367. 24 October 2022

Hypoxia differentially affects healthy men and women during a daytime nap with a dose-response relationship: a randomized, cross-over pilot study.
Riveros-Rivera, A. and Penzel, T. and Gunga, H.C. and Opatz, O. and Paul, F. and Klug, L. and Boschmann, M. and Mähler, A.
Frontiers in Physiology 13 : 899636. 24 May 2022

Prevalence of cancer predisposition germline variants in male breast cancer patients: results of the German Consortium for Hereditary Breast and Ovarian Cancer.
Rolfes, M. and Borde, J. and Möllenhoff, K. and Kayali, M. and Ernst, C. and Gehrig, A. and Sutter, C. and Ramser, J. and Niederacher, D. and Horváth, J. and Arnold, N. and Meindl, A. and Auber, B. and Rump, A. and Wang-Gohrke, S. and Ritter, J. and Hentschel, J. and Thiele, H. and Altmüller, J. and Nürnberg, P. and Rhiem, K. and Engel, C. and Wappenschmidt, B. and Schmutzler, R.K. and Hahnen, E. and Hauke, J.
Cancers 14 (13): 3292. 5 July 2022

Serum dihydrotestosterone is associated with adverse myocardial remodeling in patients with aortic valve stenosis before and after aortic valve replacement.
Schafstedde, M. and Nordmeyer, J. and Berger, F. and Knosalla, C. and Mertins, P. and Regitz-Zagrosek, V. and Kuehne, T. and Kraus, M. and Nordmeyer, S.
American Journal of Physiology Heart and Circulatory Physiology 323 (5): H949-H957. November 2022

Adolescence is a sensitive period for prefrontal microglia to act on cognitive development.
Schalbetter, S.M. and von Arx, A.S. and Cruz-Ochoa, N. and Dawson, K. and Ivanov, A. and Mueller, F.S. and Lin, H.Y. and Amport, R. and Mildenberger, W. and Mattei, D. and Beule, D. and Földy, C. and Greter, M. and Notter, T. and Meyer, U.
Science Advances 8 (9): eabi6672. 4 March 2022

Pregnancy-induced maternal microchimerism shapes neurodevelopment and behavior in mice.
Schepanski, S. and Chini, M. and Sternemann, V. and Urbschat, C. and Thiele, K. and Sun, T. and Zhao, Y. and Poburski, M. and Woestemeier, A. and Thieme, M.T. and Zazara, D.E. and Alawi, M. and Fischer, N. and Heeren, J. and Vladimirov, N. and Woehler, A. and Puelles, V.G. and Bonn, S. and Gagliani, N. and Hanganu-Opatz, I.L. and Arck, P.C.
Nature Communications 13 (1): 4571. 5 August 2022

Exon junction complex-associated multi-adapter RNPS1 nucleates splicing regulatory complexes to maintain transcriptome surveillance.
Schlautmann, L.P. and Lackmann, J.W. and Altmüller, J. and Dieterich, C. and Boehm, V. and Gehring, N.H.
Nucleic Acids Research 50 (10): 5899-5918. 10 June 2022

Somatic mosaicism in STAG2-associated cohesinopathies: Expansion of the genotypic and phenotypic spectrum.
Schmidt, J. and Dreha-Kulaczewski, S. and Zafeiriou, M.P. and Schreiber, M.K. and Wilken, B. and Funke, R. and Neuhofer, C.M. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Biskup, S. and Li, Y. and Zimmermann, W.H. and Kaulfuß, S. and Yigit, G. and Wollnik, B.
Frontiers in Cell and Developmental Biology 10 : 1025332. 16 November 2022

Familial cleft tongue caused by a unique translation initiation codon variant in TP63.
Schmidt, J. and Schreiber, G. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Li, Y. and Kaulfuß, S. and Funke, R. and Wilken, B. and Yigit, G. and Wollnik, B.
European Journal of Human Genetics 30 (2): 211-218. February 2022

SARS-CoV-2 infection dynamics revealed by wastewater sequencing analysis and deconvolution.
Schumann, V.F. and de Castro Cuadrat, R.R. and Wyler, E. and Wurmus, R. and Deter, A. and Quedenau, C. and Dohmen, J. and Faxel, M. and Borodina, T. and Blume, A. and Freimuth, J. and Meixner, M. and Grau, J.H. and Liere, K. and Hackenbeck, T. and Zietzschmann, F. and Gnirss, R. and Böckelmann, U. and Uyar, B. and Franke, V. and Barke, N. and Altmüller, J. and Rajewsky, N. and Landthaler, M. and Akalin, A.
Science of the Total Environment 853 : 158931. 20 December 2022

Whole-body magnetic resonance imaging in the large population-based German National Cohort study: predictive capability of automated image quality assessment for protocol repetitions.
Schuppert, C. and von Krüchten, R. and Hirsch, J.G. and Rospleszcz, S. and Hoinkiss, D.C. and Selder, S. and Köhn, A. and von Stackelberg, O. and Peters, A. and Völzke, H. and Kröncke, T. and Niendorf, T. and Forsting, M. and Hosten, N. and Hendel, T. and Pischon, T. and Jöckel, K.H. and Kaaks, R. and Bamberg, F. and Kauczor, H.U. and Günther, M. and Schlett, C.L.
Investigative Radiology 57 (7): 478-487. 1 July 2022

Glutamatergic transmission and receptor expression in the synucleinopathy h-α-synL62 mouse model: Effects of hydromethylthionine.
Schwab, K. and Chasapopoulou, Z. and Frahm, S. and Magbagbeolu, M. and Cranston, A. and Harrington, C.R. and Wischik, C.M. and Theuring, F. and Riedel, G.
Cellular Signalling 97 : 110386. September 2022

Eating patterns during pregnancy and postpartum and their association with diet quality and energy intake.
Schwedhelm, C. and Lipsky, L.M. and Temmen, C.D. and Nansel, T.R.
Nutrients 14 (6): 1167. 10 March 2022

3D-printed tissue-simulating phantoms for near-infrared fluorescence imaging of rheumatoid diseases.
Schädel-Ebner, S. and Hirsch, O. and Gladytz, T. and Gutkelch, D. and Licha, K. and Berger, J. and Grosenick, D.
Journal of Biomedical Optics 27 (7): 074702. July 2022

Pathogenic variants in cardiomyopathy disorder genes underlie pediatric myocarditis - Further impact of heterozygous immune disorder gene variants?
Seidel, F. and Laser, K.T. and Klingel, K. and Dartsch, J. and Theisen, S. and Pickardt, T. and Holtgrewe, M. and Gärtner, A. and Berger, F. and Beule, D. and Milting, H. and Schubert, S. and Klaassen, S. and Kühnisch, J.
Journal of Cardiovascular Development and Disease 9 (7): 216. 5 July 2022

Single-cell sequencing of human midbrain reveals glial activation and a Parkinson-specific neuronal state.
Smajić, S. and Prada-Medina, C.A. and Landoulsi, Z. and Ghelfi, J. and Delcambre, S. and Dietrich, C. and Jarazo, J. and Henck, J. and Balachandran, S. and Pachchek, S. and Morris, C.M. and Antony, P. and Timmermann, B. and Sauer, S. and Pereira, S.L. and Schwamborn, J.C. and May, P. and Grünewald, A. and Spielmann, M.
Brain 145 (3): 964-978. March 2022

Structure-based design of xanthine-benzimidazole derivatives as novel and potent tryptophan hydroxylase inhibitors.
Specker, E. and Matthes, S. and Wesolowski, R. and Schütz, A. and Grohmann, M. and Alenina, N. and Pleimes, D. and Mallow, K. and Neuenschwander, M. and Gogolin, A. and Weise, M. and Pfeifer, J. and Ziebart, N. and Heinemann, U. and von Kries, J.P. and Nazaré, M. and Bader, M.
Journal of Medicinal Chemistry 65 (16): 11126-11149. 25 August 2022

Berlin Registry of Neuroimmunological entities (BERLimmun): protocol of a prospective observational study.
Sperber, P.S. and Brandt, A.U. and Zimmermann, H.G. and Bahr, L.S. and Chien, C. and Rekers, S. and Mähler, A. and Böttcher, C. and Asseyer, S. and Duchow, A.S. and Bellmann-Strobl, J. and Ruprecht, K. and Paul, F. and Schmitz-Hübsch, T.
BMC Neurology 22 (1): 479. 14 December 2022

Pan-claudin family interactome analysis reveals shared and specific interactions.
Suarez Artiles, L. and Breiderhoff, T. and Girardello, R. and Gonschior, H. and Rodius, S. and Lesur, A. and Reimer, U. and Ramberger, E. and Perez-Hernandez, D. and Müller, D. and Mertins, P. and Dittmar, G.
Cell Reports 41 (6): 111588. 8 November 2022

Birth order, caesarean section, or daycare attendance in relation to child- and adult-onset type 1 diabetes: results from the german national cohort.
Tanoey, J. and Baechle, C. and Brenner, H. and Deckert, A. and Fricke, J. and Günther, K. and Karch, A. and Keil, T. and Kluttig, A. and Leitzmann, M. and Mikolajczyk, R. and Obi, N. and Pischon, T. and Schikowski, T. and Schipf, S.M. and Schulze, M.B. and Sedlmeier, A. and Moreno Velásquez, I. and Weber, K.S. and Völzke, H. and Ahrens, W. and Gastell, S. and Holleczek, B. and Jöckel, K.H. and Katzke, V. and Lieb, W. and Michels, K.B. and Schmidt, B. and Teismann, H. and Becher, H.
International Journal of Environmental Research and Public Health 19 (17): 10880. 31 August 2022

Deregulation and epigenetic modification of BCL2-family genes cause resistance to venetoclax in hematologic malignancies.
Thomalla, D. and Beckmann, L. and Grimm, C. and Oliverio, M. and Meder, L. and Herling, C.D. and Nieper, P. and Feldmann, T. and Merkel, O. and Lorsy, E. and da Palma Guerreiro, A. and von Jan, J. and Kisis, I. and Wasserburger, E. and Claasen, J. and Faitschuk-Meyer, E. and Altmüller, J. and Nürnberg, P. and Yang, T.P. and Lienhard, M. and Herwig, R. and Kreuzer, K.A. and Pallasch, C.P. and Buettner, R. and Schäfer, S.C. and Hartley, J. and Abken, H. and Peifer, M. and Kashkar, H. and Knittel, G. and Eichhorst, B. and Ullrich, R.T. and Herling, M. and Reinhardt, H.C. and Hallek, M. and Schweiger, M.R. and Frenzel, L.P.
Blood 140 (20): 2113-2126. 17 November 2022

Precise CRISPR/Cas-mediated gene repair with minimal off-target and unintended on-target mutations in human hematopoietic stem cells.
Tran, N.T. and Danner, E. and Li, X. and Graf, R. and Lebedin, M. and de la Rosa, K. and Kühn, R. and Rajewsky, K. and Chu, V.T.
Science Advances 8 (22): eabm9106. 3 June 2022

Unraveling structural rearrangements of the CFH gene cluster in atypical hemolytic uremic syndrome patients using molecular combing and long-fragment targeted sequencing.
Tschernoster, N. and Erger, F. and Walsh, P.R. and McNicholas, B. and Fistrek, M. and Habbig, S. and Schumacher, L. and Folz-Donahue, K. and Kukat, C. and Toliat, M.R. and Becker, C. and Thiele, H. and Kavanagh, D. and Nürnberg, P. and Beck, B. and Altmüller, J.
Journal of Molecular Diagnostics 24 (6): 619-631. June 2022

TSG101 associates with PARP1 and is essential for PARylation and DNA damage-induced NF-κB activation.
Tufan, A.B. and Lazarow, K. and Kolesnichenko, M. and Sporbert, A. and von Kries, J.P. and Scheidereit, C.
EMBO Journal 41 (21): e110372. 2 November 2022

Transcriptome analysis reveals putative genes involved in the lipid metabolism of chaulmoogra oil biosynthesis in Carpotroche brasiliensis (Raddi) A.Gray, a tropical tree species.
Vasconcelos, L.M. and Bittencourt, F. and Vidal, R.O. and Silva, E.M.A. and Costa, E.A. and Micheli, F. and Kirst, M. and Pirovani, C.P. and Gaiotto, F.A
Forests 13 (11): 1806. 29 October 2022

NIK/MAP3K14 in hepatocytes orchestrates NASH to hepatocellular carcinoma progression via JAK2/STAT5 inhibition.
Vesting, A.J. and Jais, A. and Klemm, P. and Steuernagel, L. and Wienand, P. and Fog-Tonnesen, M. and Hvid, H. and Schumacher, A.L. and Kukat, C. and Nolte, H. and Georgomanolis, T. and Altmüller, J. and Pasparakis, M. and Schmidt, A. and Krüger, M. and Supprian, M.S. and Waisman, A. and Straub, B.K. and Raschzok, N. and Bernier, M. and Birkenfeld, A.L. and Hövelmeyer, N. and Brüning, J.C. and Wunderlich, F.T.
Molecular Metabolism 66 : 101626. December 2022

Proteome-wide quantitative RNA-interactome capture identifies phosphorylation sites with regulatory potential in RBM20.
Vieira e Vieira, C.H. and Dauksaite, V. and Sporbert, A. and Gotthardt, M. and Selbach, M.
Molecular Cell 82 (11): 2069-2083. 2 June 2022

Disruptors of AKAP-dependent protein-protein interactions.
Walker-Gray, R. and Pallien, T. and Miller, D.C. and Oder, A. and Neuenschwander, M. and von Kries, J.P. and Diecke, S. and Klussmann, E.
Methods in Molecular Biology 2483 : 117-139. 2022

Human UPF3A and UPF3B enable fault-tolerant activation of nonsense-mediated mRNA decay.
Wallmeroth, D. and Lackmann, J.W. and Kueckelmann, S. and Altmüller, J. and Dieterich, C. and Boehm, V. and Gehring, N.H.
EMBO Journal 41 (10): e109191. 16 May 2022

Venn diagrams may indicate erroneous statistical reasoning in transcriptomics.
Weiner, J. and Obermayer, B. and Beule, D.
Frontiers in Genetics 13 : 818683. 14 April 2022

Immune phenotypes and target antigens of clonally expanded bone marrow T cells in treatment-naïve multiple myeloma.
Welters, C. and Lammoglia Cobo, M.F. and Stein, C.A. and Hsu, M.T. and Ben Hamza, A. and Penter, L. and Chen, X. and Buccitelli, C. and Popp, O. and Mertins, P. and Dietze, K. and Bullinger, L. and Moosmann, A. and Blanc, E. and Beule, D. and Gerbitz, A. and Strobel, J. and Hackstein, H. and Rahn, H.P. and Dornmair, K. and Blankenstein, T. and Hansmann, L.
Cancer Immunology Research 10 (11): 1407-1419. 1 November 2022

Can fractal dimensions objectivize gastropod shell morphometrics? A case study from Lake Lugu (SW China).
Wiese, R. and Harrington, K. and Hartmann, K. and Hethke, M. and Rintelen, T. and Zhang, H. and Zhang, L.J. and Riedel, F.
Ecology and Evolution 12 (3): e8622. February 2022

EBAG9-silencing exerts an immune checkpoint function without aggravating adverse effects.
Wirges, A. and Bunse, M. and Joedicke, J.J. and Blanc, E. and Gudipati, V. and Moles, M.W. and Shiku, H. and Beule, D. and Huppa, J.B. and Höpken, U.E. and Rehm, A.
Molecular Therapy 30 (11): 3358-3378. 2 November 2022

Mutations in TAF8 cause a neurodegenerative disorder.
Wong, K.M. and Jepsen, W.M. and Efthymiou, S. and Salpietro, V. and Sanchez-Castillo, M. and Yip, J. and Kriouile, Y. and Diegmann, S. and Dreha-Kulaczewski, S. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Toosi, M.B. and Akhondian, J. and Ghayoor Karimiani, E. and Hummel-Abmeier, H. and Huppke, B. and Houlden, H. and Gärtner, J. and Maroofian, R. and Huppke, P.
Brain 145 (9): 3022-3034. September 2022

The transcription factor EB (TFEB) sensitizes the heart to chronic pressure overload.
Wundersitz, S. and Pablo Tortola, C. and Schmidt, S. and Oliveira Vidal, R. and Kny, M. and Hahn, A. and Zanders, L. and Katus, H.A. and Sauer, S. and Butter, C. and Luft, F.C. and Müller, O.J. and Fielitz, J.
International Journal of Molecular Sciences 23 (11): 5943. 25 May 2022

Loss-of-function variants in DNM1 cause a specific form of developmental and epileptic encephalopathy only in biallelic state.
Yigit, G. and Sheffer, R. and Daana, M. and Li, Y. and Kaygusuz, E. and Mor-Shakad, H. and Altmüller, J. and Nürnberg, P. and Douiev, L. and Kaulfuss, S. and Burfeind, P. and Wollnik, B. and Brockmann, K.
Journal of Medical Genetics 59 (6): 549-553. 20 May 2022

A preclinical study on brugada syndrome with a CACNB2 variant using human cardiomyocytes from induced pluripotent stem cells.
Zhong, R. and Schimanski, T. and Zhang, F. and Lan, H. and Hohn, A. and Xu, Q. and Huang, M. and Liao, Z. and Qiao, L. and Yang, Z. and Li, Y. and Zhao, Z. and Li, X. and Rose, L. and Albers, S. and Maywald, L. and Müller, J. and Dinkel, H. and Saguner, A. and Janssen, J.W.G. and Telugu, N.S. and Xi, Y. and Lang, S. and Kleinsorge, M. and Duru, F. and Zhou, X. and Diecke, S. and Cyganek, L. and Akin, I. and El-Battrawy, I.
International Journal of Molecular Sciences 23 (15): 8313. 1 August 2022

HDLBP binds ER-targeted mRNAs by multivalent interactions to promote protein synthesis of transmembrane and secreted proteins.
Zinnall, U. and Milek, M. and Minia, I. and Vieira-Vieira, C.H. and Müller, S. and Mastrobuoni, G. and Hazapis, O.G. and Del Giudice, S. and Schwefel, D. and Bley, N. and Voigt, F. and Chao, J.A. and Kempa, S. and Hüttelmaier, S. and Selbach, M. and Landthaler, M.
Nature Communications 13 (1): 2727. 18 May 2022

Mammalian splicing divergence is shaped by drift, buffering in trans, and a scaling law.
Zou, X. and Schaefke, B. and Li, Y. and Jia, F. and Sun, W. and Li, G. and Liang, W. and Reif, T. and Heyd, F. and Gao, Q. and Tian, S. and Li, Y. and Tang, Y. and Fang, L. and Hu, Y. and Chen, W.
Life Science Alliance 5 (4): e202101333. April 2022

Induced pluripotent stem cells and cerebral organoids from the critically endangered Sumatran rhinoceros.
Zywitza, V. and Frahm, S. and Krüger, N. and Weise, A. and Göritz, F. and Hermes, R. and Holtze, S. and Colleoni, S. and Galli, C. and Drukker, M. and Hildebrandt, T.B. and Diecke, S.
iScience 25 (11): 105414. 18 November 2022

Naïve-like pluripotency to pave the way for saving the northern white rhinoceros from extinction.
Zywitza, V. and Rusha, E. and Shaposhnikov, D. and Ruiz-Orera, J. and Telugu, N. and Rishko, V. and Hayashi, M. and Michel, G. and Wittler, L. and Stejskal, J. and Holtze, S. and Göritz, F. and Hermes, R. and Wang, J. and Izsvák, Z. and Colleoni, S. and Lazzari, G. and Galli, C. and Hildebrandt, T.B. and Hayashi, K. and Diecke, S. and Drukker, M.
Scientific Reports 12 (1): 3100. 8 March 2022

Therapeutic targets for phenolic compounds from agro-industrial by-products against obesity.
de la Luz Cádiz-Gurrea, M. and Fernández-Ochoa, Á. and Del Carmen Villegas-Aguilar, M. and Arráez-Román, D. and Segura-Carretero, A.
Current Medicinal Chemistry 29 (6): 1083-1098. 1 February 2022

2021

Mapping the human genetic architecture of COVID-19.

Nature 600 (7889): 472-477. December 2021

Preclinical MRI of the kidney : methods and protocols.
Pohlmann, A. and Niendorf, T., eds.
Methods in Molecular Biology, 2216 . Springer / Humana Press, New York, NY. ISBN 978-1-0716-0977-4 2021

Feasibility of a culturally adapted dietary weight-loss intervention among Ghanaian migrants in Berlin, Germany: the ADAPT study.
Amoah, S. and Ennin, R. and Sagoe, K. and Steinbrecher, A. and Pischon, T. and Mockenhaupt, F.P. and Danquah, I.
International Journal of Environmental Research and Public Health 18 (2): 510. 9 January 2021

In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation.
Anania, C. and Acemel, R.D. and Jedamzick, J. and Bolondi, A. and Cova, G. and Brieske, N. and Kuehn, R. and Wittler, L. and Real, F.M. and Lupianez, D.G.
bioRxiv : 2021.04.14.439779. 14 April 2021

Putative mobilized colistin resistance genes in the human gut microbiome.
Andrade, B.G.N. and Goris, T. and Afli, H. and Coutinho, F.H. and Dávila, A.M.R. and Cuadrat, R.R.C.
BMC Microbiology 21 : 220. 22 July 2021

PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.
Appel, L.M. and Franke, V. and Bruno, M. and Grishkovskaya, I. and Kasiliauskaite, A. and Kaufmann, T. and Schoeberl, U.E. and Puchinger, M.G. and Kostrhon, S. and Ebenwaldner, C. and Sebesta, M. and Beltzung, E. and Mechtler, K. and Lin, G. and Vlasova, A. and Leeb, M. and Pavri, R. and Stark, A. and Akalin, A. and Stefl, R. and Bernecky, C. and Djinovic-Carugo, K. and Slade, D.
Nature Communications 12 (1): 6078. 19 October 2021

Inhibiting PHGDH with NCT-503 reroutes glucose-derived carbons into the TCA cycle, independently of its on-target effect.
Arlt, B. and Mastrobuoni, G. and Wuenschel, J. and Astrahantseff, K. and Eggert, A. and Kempa, S. and Deubzer, H.E.
Journal of Enzyme Inhibition and Medicinal Chemistry 36 (1): 1282-1289. 30 June 2021

Inhibiting phosphoglycerate dehydrogenase counteracts chemotherapeutic efficacy against MYCN-amplified neuroblastoma.
Arlt, B. and Zasada, C. and Baum, K. and Wuenschel, J. and Mastrobuoni, G. and Lodrini, M. and Astrahantseff, K. and Winkler, A. and Schulte, J.H. and Finkler, S. and Forbes, M. and Hundsdoerfer, P. and Guergen, D. and Hoffmann, J. and Wolf, J. and Eggert, A. and Kempa, S. and Deubzer, H.E.
International Journal of Cancer 148 (5): 1219-1232. 1 March 2021

SNT: a unifying toolbox for quantification of neuronal anatomy.
Arshadi, C. and Günther, U. and Eddison, M. and Harrington, K.I.S. and Ferreira, T.A.
Nature Methods 18 : 374-377. April 2021

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients.
Aschenbrenner, A.C. and Mouktaroudi, M. and Krämer, B. and Oestreich, M. and Antonakos, N. and Nuesch-Germano, M. and Gkizeli, K. and Bonaguro, L. and Reusch, N. and Baßler, K. and Saridaki, M. and Knoll, R. and Pecht, T. and Kapellos, T.S. and Doulou, S. and Kröger, C. and Herbert, M. and Holsten, L. and Horne, A. and Gemünd, I.D. and Rovina, N. and Agrawal, S. and Dahm, K. and van Uelft, M. and Drews, A. and Lenkeit, L. and Bruse, N. and Gerretsen, J. and Gierlich, J. and Becker, M. and Händler, K. and Kraut, M. and Theis, H. and Mengiste, S. and Domenico, E. and Schulte-Schrepping, J. and Seep, L. and Raabe, J. and Hoffmeister, C. and ToVinh, M. and Keitel, V. and Rieke, G. and Talevi, V. and Skowasch, D. and Aziz, N.A. and Pickkers, P. and van de Veerdonk, F.L. and Netea, M.G. and Schultze, J.L. and Kox, M. and Breteler, M.M.B. and Nattermann, J. and Koutsoukou, A. and Giamarellos-Bourboulis, E.J. and Ulas, T.
Genome Medicine 13 (1): 7. 13 January 2021

Post-COVID syndrome in non-hospitalised patients with COVID-19: a longitudinal prospective cohort study.
Augustin, M. and Schommers, P. and Stecher, M. and Dewald, F. and Gieselmann, L. and Gruell, H. and Horn, C. and Vanshylla, K. and Cristanziano, V.D. and Osebold, L. and Roventa, M. and Riaz, T. and Tschernoster, N. and Altmueller, J. and Rose, L. and Salomon, S. and Priesner, V. and Luers, J.C. and Albus, C. and Rosenkranz, S. and Gathof, B. and Fätkenheuer, G. and Hallek, M. and Klein, F. and Suárez, I. and Lehmann, C.
The Lancet Regional Health - Europe 6 : 100122. July 2021

Assessing the (anti)-inflammatory potential of diets.
Bahr, L.S. and Franz, K. and Mähler, A.
Current Opinion in Clinical Nutrition and Metabolic Care 24 (5): 402-410. 1 September 2021

RS-FISH: Precise, interactive, fast, and scalable FISH spot detection.
Bahry, E. and Breimann, L. and Zouinkhi, M. and Epstein, L. and Kolyvanov, K. and Long, X. and Harrington, K.I.S. and Lionnet, T. and Preibisch, S.
bioRxiv : 2021.03.09.434205v2. 18 October 2021

Ultra-rapid emergency genomic diagnosis of Donahue syndrome in a preterm infant within 17 hours.
Bamborschke, D. and Özdemir, Ö. and Kreutzer, M. and Motameny, S. and Thiele, H. and Kribs, A. and Dötsch, J. and Altmüller, J. and Nürnberg, P. and Cirak, S.
American Journal of Medical Genetics A 185 (1): 90-96. January 2021

SUMOylation of the chromodomain factor MRG-1 in C. elegans affects chromatin-regulatory dynamics.
Baytek, G. and Blume, A. and Gerceker Demirel, F. and Bulut, S. and Mertins, P. and Tursun, B.
bioRxiv : 2021.02.14.431134. 14 February 2021

CARDIOKIN1: computational assessment of myocardial metabolic capability in healthy controls and patients with valve diseases.
Berndt, N. and Eckstein, J. and Wallach, I. and Nordmeyer, S. and Kelm, M. and Kirchner, M. and Goubergrits, L. and Schafstedde, M. and Hennemuth, A. and Kraus, M. and Grune, T. and Mertins, P. and Kuehne, T. and Holzhütter, H.G.
Circulation 144 (24): 1926-1939. 14 December 2021

Single-cell RNA sequencing reveals distinct tumor microenvironmental patterns in lung adenocarcinoma.
Bischoff, P. and Trinks, A. and Obermayer, B. and Pett, J.P. and Wiederspahn, J. and Uhlitz, F. and Liang, X. and Lehmann, A. and Jurmeister, P. and Elsner, A. and Dziodzio, T. and Rückert, J.C. and Neudecker, J. and Falk, C. and Beule, D. and Sers, C. and Morkel, M. and Horst, D. and Blüthgen, N. and Klauschen, F.
Oncogene 40 : 6748–6758. 16 December 2021

The single-cell transcriptional landscape of lung carcinoid tumors.
Bischoff, P. and Trinks, A. and Wiederspahn, J. and Obermayer, B. and Pett, J.P. and Jurmeister, P. and Elsner, A. and Dziodzio, T. and Rückert, J.C. and Neudecker, J. and Falk, C. and Beule, D. and Sers, C. and Morkel, M. and Horst, D. and Klauschen, F. and Blüthgen, N.
bioRxiv : 2021.12.07.471416. 8 December 2021

SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity.
Boehm, V. and Kueckelmann, S. and Gerbracht, J.V. and Kallabis, S. and Britto-Borges, T. and Altmüller, J. and Krüger, M. and Dieterich, C. and Gehring, N.H.
Nature Communications 12 (1): 3965. 25 June 2021

A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover.
Boileau, E. and Altmüller, J. and Naarmann-de Vries, I.S. and Dieterich, C.
Briefings in Bioinformatics 22 (6): bbab219. November 2021

Topical inflammasome inhibition with disulfiram prevents irritant contact dermatitis.
Bonnekoh, H. and Vera, C. and Abad-Perez, A. and Radetzki, S. and Neuenschwander, M. and Specker, E. and Mahnke, N.A. and Frischbutter, S. and Latz, E. and Nazaré, M. and von Kries, J. and Maurer, M. and Scheffel, J. and Krause, K.
Clinical and Translational Allergy 11 (5): e12045. July 2021

The H4K20 demethylase DPY-21 regulates the dynamics of condensin DC binding.
Breimann, L. and Morao, A.K. and Kim, J. and Jimenez, D. and Maryn, N. and Bikkasani, K. and Carrozza, M.J. and Albritton, S.E. and Kramer, M. and Street, L.A. and Cerimi, K. and Schumann, V.F. and Bahry, E. and Preibisch, S. and Woehler, A. and Ercan, S.
bioRxiv : 2021.04.11.438056. 24 September 2021

Cannabinoid receptor type 2 ligands: an analysis of granted patents since 2010.
Brennecke, B. and Gazzi, T. and Atz, K. and Fingerle, J. and Kuner, P. and Schindler, T. and de Weck, G. and Nazaré, M. and Grether, U.
Pharmaceutical Patent Analyst 10 (3): 111-163. May 2021

DOTAM-based, targeted, activatable fluorescent probes for the highly sensitive and selective detection of cancer cells.
Brennecke, B. and Wang, Q. and Haap, W. and Grether, U. and Hu, H.Y. and Nazaré, M.
Bioconjugate Chemistry 32 (4): 702-712. 21 April 2021

An integrated host-microbiome response to atrazine exposure mediates toxicity in Drosophila.
Brown, J.B. and Langley, S.A. and Snijders, A.M. and Wan, K.H. and Morris, S.N.S. and Booth, B.W. and Fisher, W.W. and Hammonds, A.S. and Park, S. and Weiszmann, R. and Yu, C. and Kirwan, J.A. and Weber, R.J.M. and Viant, M.R. and Mao, J.H. and Celniker, S.E.
Communications Biology 4 (1): 1324. 24 November 2021

Radiation driven chemistry in biomolecules -- is (V)UV involved in the bioactivity of argon jet plasmas?
Bruno, G. and Wenske, S. and Mahdikia, H. and Gerling, T. and von Woedtke, T. and Wende, K.
Frontiers in Physics 9 : 759005. 14 December 2021

Coregulation of gene expression by White collar 1 and phytochrome in Ustilago maydis.
Brych, A. and Haas, F.B. and Parzefall, K. and Panzer, S. and Schermuly, J. and Altmüller, J. and Engelsdorf, T. and Terpitz, U. and Rensing, S.A. and Kiontke, S. and Batschauer, A.
Fungal Genetics and Biology 152 : 103570. July 2021

Mitochondrial respiratory chain function promotes extracellular matrix integrity in cartilage.
Bubb, K. and Holzer, T. and Nolte, J.L. and Krüger, M. and Wilson, R. and Schlötzer-Schrehardt, U. and Brinckmann, J. and Altmüller, J. and Aszodi, A. and Fleischhauer, L. and Clausen-Schaumann, H. and Probst, K. and Brachvogel, B.
Journal of Biological Chemistry 297 (4): 101224. October 2021

DenoiSeg: joint denoising and segmentation.
Buchholz, T.O. and Prakash, M. and Schmidt, D. and Krull, A. and Jug, F.
Lecture Notes in Computer Science 12535 : 324-337. 10 January 2021

Inhibition of the NLRP3/IL-1β axis protects against sepsis-induced cardiomyopathy.
Busch, K. and Kny, M. and Huang, N. and Klassert, T.E. and Stock, M. and Hahn, A. and Graeger, S. and Todiras, M. and Schmidt, S. and Chamling, B. and Willenbrock, M. and Groß, S. and Biedenweg, D. and Heuser, A. and Scheidereit, C. and Butter, C. and Felix, S.B. and Otto, O. and Luft, F.C. and Slevogt, H. and Fielitz, J.
Journal of Cachexia Sarcopenia and Muscle 12 (6): 1653-1668. December 2021

Hydrogels containing budesonide-loaded nanoparticles to facilitate percutaneous absorption for atopic dermatitis treatment applications.
Campos, E.V.R. and Proença, P.L.F. and Costa, T.G.d. and de Lima, R. and Hedtrich, S. and Fraceto, L.F. and de Araujo, D.R.
ACS Applied Polymer Materials 3 (9): 4436-4449. 10 September 2021

Quantitative assessment of renal perfusion and oxygenation by invasive probes: basic concepts.
Cantow, K. and Evans, R.G. and Grosenick, D. and Gladytz, T. and Niendorf, T. and Flemming, B. and Seeliger, E.
Methods in Molecular Biology 2216 : 89-107. 2021

Monitoring renal hemodynamics and oxygenation by invasive probes: experimental protocol.
Cantow, K. and Ladwig-Wiegard, M. and Flemming, B. and Pohlmann, A. and Niendorf, T. and Seeliger, E.
Methods in Molecular Biology 2216 : 327-347. 2021

Enhanced properties of a benzimidazole benzylpyrazole lysine demethylase inhibitor: mechanism-of-action, binding site analysis, and activity in cellular models of prostate cancer.
Carter, D.M. and Specker, E. and Malecki, P.H. and Przygodda, J. and Dudaniec, K. and Weiss, M.S. and Heinemann, U. and Nazaré, M. and Gohlke, U.
Journal of Medicinal Chemistry 64 (19): 14266-14282. 14 October 2021

Generation of 20 human induced pluripotent stem cell lines from patients with focal segmental glomerulosclerosis (FSGS).
Cernoch, J. and Fisch, T. and Fischer, I. and Fischer, K. and Iwanska, A. and Krüger, N. and Küchler, J. and Schaar, C. and Schommer, S. and Telugu, N. and Miller, D. and Fernández Vallone, V. and Kurtz, A. and Reinke, P. and Diecke, S. and Stachelscheid, H.
Stem Cell Research 54 : 102406. July 2021

R-loops trigger the release of cytoplasmic ssDNAs leading to chronic inflammation upon DNA damage.
Chatzidoukaki, O. and Stratigi, K. and Goulielmaki, E. and Niotis, G. and Akalestou-Clocher, A. and Gkirtzimanaki, K. and Zafeiropoulos, A. and Altmüller, J. and Topalis, P. and Garinis, G.A.
Science Advances 7 (47): eabj5769. 19 November 2021

Quantitative analysis of renal perfusion by arterial spin labeling.
Chuang, K.H. and Kober, F. and Ku, M.C.
Methods in Molecular Biology 2216 : 655-666. 2021

Renal blood flow using arterial spin labeling (ASL) MRI: experimental protocol and principles.
Chuang, K.H. and Meier, M. and Fernández-Seara, M.A. and Kober, F. and Ku, M.C.
Methods in Molecular Biology 2216 : 443-453. 2021

Peritoneal metastasis of colorectal cancer (pmCRC): identification of predictive molecular signatures by a novel preclinical platform of matching pmCRC PDX/PD3D models.
Dahlmann, M. and Gambara, G. and Brzezicha, B. and Popp, O. and Pachmayr, E. and Wedeken, L. and Pflaume, A. and Mokritzkij, M. and Gül-Klein, S. and Brandl, A. and Schweiger-Eisbacher, C. and Mertins, P. and Hoffmann, J. and Keilholz, U. and Walther, W. and Regenbrecht, C. and Rau, B. and Stein, U.
Molecular Cancer 20 (1): 129. 21 October 2021

Cores laboratories: organization for stem cell technology advancement.
Dahéron, L. and Diecke, S. and Healy, L. and D'Souza, S.
Stem Cell Research 53 : 102266. May 2021

Clinical and genetic characterization of PYROXD1-related myopathy patients from Turkey.
Daimagüler, H.S. and Akpulat, U. and Özdemir, Ö. and Yis, U. and Güngör, S. and Talim, B. and Diniz, G. and Baydan, F. and Thiele, H. and Altmüller, J. and Nürnberg, P. and Cirak, S.
American Journal of Medical Genetics A 185 (6): 1678-1690. 14 May 2021

A homology independent sequence replacement strategy in human cells using a CRISPR nuclease.
Danner, E. and Lebedin, M. and de la Rosa, K. and Kühn, R.
Open Biology 11 (1): 200283. January 2021

Hardware considerations for preclinical magnetic resonance of the kidney.
Delgado, P.R. and Küstermann, E. and Kühne, A. and Millward, J.M. and Niendorf, T. and Pohlmann, A. and Meier, M.
Methods in Molecular Biology 2216 : 131-155. 2021

From tube to structure: SPA Cryo-EM workflow using apoferritin as an example.
Diebolder, C.A. and Dillard, R.S. and Renault, L.
Methods in Molecular Biology 2305 (2305): 229-256. 6 May 2021

Current applications and future development of magnetic resonance fingerprinting in diagnosis, characterization, and response monitoring in cancer.
Ding, H. and Velasco, C. and Ye, H. and Lindner, T. and Grech-Sollars, M. and O’Callaghan, J. and Hiley, C. and Chouhan, M.D. and Niendorf, T. and Koh, D.M. and Prieto, C. and Adeleke, S.
Cancers 13 (19): 4742. 1 October 2021

Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance.
Dorel, M. and Klinger, B. and Mari, T. and Toedling, J. and Blanc, E. and Messerschmidt, C. and Nadler-Holly, M. and Ziehm, M. and Sieber, A. and Hertwig, F. and Beule, D. and Eggert, A. and Schulte, J.H. and Selbach, M. and Blüthgen, N.
PLoS Computational Biology 17 (11): e1009515. 4 November 2021

Mechanical forces switch blood vessel subtypes to arrest adolescent bone growth.
Dzamukova, M. and Brunner, T.M. and Miotla-Zarebska, J. and Heinrich, F. and Brylka, L. and Mashreghi, M.F. and Kusumbe, A. and Kühn, R. and Schinke, T. and Vincent, T. and Löhning, M.
Research Square : rs.3.rs-120475. 12 January 2021

Long-term follow-up after the application of mesenchymal stromal cells in children and adolescents with steroid-refractory graft-versus-host disease.
Döring, M. and Cabanillas Stanchi, K.M. and Lenglinger, K. and Treuner, C. and Gieseke, F. and Erbacher, A. and Mezger, M. and Vaegler, M. and Schlegel, P.G. and Greil, J. and Bettoni da Cunha Riehm, C. and Faul, C. and Schumm, M. and Lang, P. and Handgretinger, R. and Müller, I.
Stem Cells and Development 30 (5): 234-246. 19 February 2021

A helminth-derived chitinase structurally similar to mammalian chitinase displays immunomodulatory properties in inflammatory lung disease.
Ebner, F. and Lindner, K. and Janek, K. and Niewienda, A. and Malecki, P.H. and Weiss, M.S. and Sutherland, T.E. and Heuser, A. and Kühl, A.A. and Zentek, J. and Hofmann, A. and Hartmann, S.
Journal of Immunology Research 2021 : 234836. 25 November 2021

Cystatin M/E variant causes autosomal dominant keratosis follicularis spinulosa decalvans by dysregulating cathepsins L and V.
Eckl, K.M. and Gruber, R. and Brennan, L. and Marriott, A. and Plank, R. and Moosbrugger-Martinz, V. and Blunder, S. and Schossig, A. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Zschocke, J. and Hennies, H.C. and Schmuth, M.
Frontiers in Genetics 12 : 689940. July 2021

Surface AMP deaminase 2 as a novel regulator modifying extracellular adenine nucleotide metabolism.
Ehlers, L. and Kuppe, A. and Damerau, A. and Wilantri, S. and Kirchner, M. and Mertins, P. and Strehl, C. and Buttgereit, F. and Gaber, T.
FASEB Journal 35 (7): e21684. July 2021

32-channel self-grounded bow-tie transceiver array for cardiac MR at 7.0T.
Eigentler, T.W. and Kuehne, A. and Boehmert, L. and Dietrich, S. and Els, A. and Waiczies, H. and Niendorf, T.
Magnetic Resonance in Medicine 86 (5): 2862-2879. November 2021

Deciphering the pathogenic role of a variant with uncertain significance for short QT and Brugada syndromes using gene-edited human-induced pluripotent stem cell-derived cardiomyocytes and preclinical drug screening.
El-Battrawy, I. and Lan, H. and Cyganek, L. and Maywald, L. and Zhong, R. and Zhang, F. and Xu, Q. and Lee, J. and Duperrex, E. and Hierlemann, A. and Saguner, A.M. and Duru, F. and Kovacs, B. and Huang, M. and Liao, Z. and Albers, S. and Müller, J. and Dinkel, H. and Rose, L. and Hohn, A. and Yang, Z. and Qiao, L. and Li, Y. and Lang, S. and Kleinsorge, M. and Mügge, A. and Aweimer, A. and Fan, X. and Diecke, S. and Akin, I. and Li, G. and Zhou, X.
Clinical and Translational Medicine 11 (12): e646. 26 December 2021

Homozygous nonsense mutation of WTN10B gene in a Moroccan family with split-hand foot malformation identified by exome sequencing: a case report.
Elalaoui, S.C. and Fejjal, N. and Li, Y. and Thiele, H. and Altmüller, J. and Guaoua, S. and Nürnberg, P. and Wollnik, B. and Sefiani, A. and Ratbi, I.
Pan African Medical Journal 39 : 21. May 2021

Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum.
Epstein, L. and Dubois, Z. and Smith, J. and Lee, Y. and Harrington, K.
Biosystems 208 : 104483. October 2021

Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum.
Epstein, L. and Dubois, Z. and Smith, J. and Lee, Y. and Harrington, K.
bioRxiv : 2021.03.14.435300. 15 March 2021

Transposable elements and introgression introduce genetic variation in the invasive ant Cardiocondyla obscurior.
Errbii, M. and Keilwagen, J. and Hoff, K.J. and Steffen, R. and Altmüller, J. and Oettler, J. and Schrader, L.
Molecular Ecology 30 (23): 6211-6228. December 2021

Base editing repairs an SGCA mutation in human primary muscle stem cells.
Escobar, H. and Krause, A. and Keiper, S. and Kieshauer, J. and Müthel, S. and García de Paredes, M. and Metzler, E. and Kühn, R. and Heyd, F. and Spuler, S.
JCI Insight 6 (10): e145994. 24 May 2021

Expanding the spectrum of FAT1 nephropathies by novel mutations that affect hippo signaling.
Fabretti, F. and Tschernoster, N. and Erger, F. and Hedergott, A. and Buescher, A.K. and Dafinger, C. and Reusch, B. and Köntges, V.K. and Kohl, S. and Bartram, M.P. and Weber, L.T. and Thiele, H. and Altmueller, J. and Schermer, B. and Beck, B.B. and Habbig, S.
Kidney International Reports 6 (5): 1368-1378. May 2021

Single synapse glutamate imaging reveals multiple levels of release mode regulation in mammalian synapses.
Farsi, Z. and Walde, M. and Klementowicz, A.E. and Paraskevopoulou, F. and Woehler, A.
iScience 24 (1): 101909. 22 January 2021

The role of high-resolution analytical techniques in the development of functional foods.
Fernández-Ochoa, Á. and Leyva-Jiménez, F.J. and De la Luz Cádiz-Gurrea, M. and Pimentel-Moral, S. and Segura-Carretero, A.
International Journal of Molecular Sciences 22 (6): 3220. 22 March 2021

MTBP phosphorylation controls DNA replication origin firing.
Ferreira, P. and Höfer, V. and Kronshage, N. and Marko, A. and Reusswig, K.U. and Tetik, B. and Dießel, C. and Köhler, K. and Tschernoster, N. and Altmüller, J. and Schulze, N. and Pfander, B. and Boos, D.
Scientific Reports 11 (1): 4242. 19 February 2021

Predicting brain-age from raw T(1)-weighted magnetic resonance imaging data using 3D convolutional neural networks.
Fisch, L. and Ernsting, J. and Winter, N.R. and Holstein, V. and Leenings, R. and Beisemann, M. and Sarink, K. and Emden, D. and Opel, N. and Redlich, R. and Repple, J. and Grotegerd, D. and Meinert, S. and Wulms, N. and Minnerup, H. and Hirsch, J.G. and Niendorf, T. and Endemann, B. and Bamberg, F. and Kröncke, T. and Peters, A. and Bülow, R. and Völzke, H. and von Stackelberg, O. and Sowade, R.F. and Umutlu, L. and Schmidt, B. and Caspers, S. and Kugel, H. and Baune, B.T. and Kircher, T. and Risse, B. and Dannlowski, U. and Berger, K. and Hahn, T.
arXiv : 2103.11695. 22 March 2021

The SEQC2 Epigenomics Quality Control (EpiQC) Study: comprehensive characterization of epigenetic methods, reproducibility, and quantification.
Foox, J. and Nordlund, J. and Lalancette, C. and Gong, T. and Lacey, M. and Lent, S. and Langhorst, B.W. and Ponnaluri, V.K.C. and Williams, L. and Padmamabhan, K. and Cavalcante, R. and Lundmark, A. and Butler, D. and Gurvitch, J. and Greally, J.M. and Suzuki, M. and Menor, M. and Nasu, M. and Alonso, A. and Sheridan, C. and Scherer, A. and Bruinsma, S. and Golda, G. and Muszynska, A. and Labaj, P.P. and Campbe, M.A. and Wos, F. and Raine, A. and Liljedahl, U. and Axelsson, T. and Wang, C. and Chen, Z. and Yang, Z. and Li, J. and Yang, X. and Wang, H. and Melnick, A. and Guo, S. and Blume, A. and Franke, V. and Ibanez de Caceres, I. and Rodriguez-Antolin, C. and Rosas, R. and Wade Davis, J. and Ishii, J. and Megherbi, D.B. and Xiao, W. and Liao, W. and Xu, J. and Hong, H. and Ning, B. and Tong, W. and Akalin, A. and Wang, Y. and Wang, Y. and Mason, C.E.
bioRxiv : 2020.12.14.421529. 26 April 2021

The SEQC2 epigenomics quality control (EpiQC) study.
Foox, J. and Nordlund, J. and Lalancette, C. and Gong, T. and Lacey, M. and Lent, S. and Langhorst, B.W. and Ponnaluri, V.K.C. and Williams, L. and Padmanabhan, K.R. and Cavalcante, R. and Lundmark, A. and Butler, D. and Mozsary, C. and Gurvitch, J. and Greally, J.M. and Suzuki, M. and Menor, M. and Nasu, M. and Alonso, A. and Sheridan, C. and Scherer, A. and Bruinsma, S. and Golda, G. and Muszynska, A. and Łabaj, P.P. and Campbell, M.A. and Wos, F. and Raine, A. and Liljedahl, U. and Axelsson, T. and Wang, C. and Chen, Z. and Yang, Z. and Li, J. and Yang, X. and Wang, H. and Melnick, A. and Guo, S. and Blume, A. and Franke, V. and Ibanez de Caceres, I. and Rodriguez-Antolin, C. and Rosas, R. and Davis, J.W. and Ishii, J. and Megherbi, D.B. and Xiao, W. and Liao, W. and Xu, J. and Hong, H. and Ning, B. and Tong, W. and Akalin, A. and Wang, Y. and Deng, Y. and Mason, C.E.
Genome Biology 22 (1): 332. 6 December 2021

Diverse but unique astrocytic phenotypes during embryonic stem cell differentiation, culturing and aging.
Freitag, K. and Eede, P. and Ivanov, A. and Schneeberger, S. and Borodina, T. and Sauer, S. and Beule, D. and Heppner, F.L.
bioRxiv : 2021.08.02.454573v1. 28 November 2021

Dissecting herpes simplex virus 1-induced host shutoff at the RNA level.
Friedel, C.C. and Whisnant, A.W. and Djakovic, L. and Rutkowski, A.J. and Friedl, M.S. and Kluge, M. and Williamson, J.C. and Sai, S. and Vidal, R.O. and Sauer, S. and Hennig, T. and Grothey, A. and Milić, A. and Prusty, B.K. and Lehner, P.J. and Matheson, N.J. and Erhard, F. and Dölken, L.
Journal of Virology 95 (3): e01399-20. 13 January 2021

Comprehensive micro-scaled proteome and phosphoproteome characterization of archived retrospective cancer repositories.
Friedrich, C. and Schallenberg, S. and Kirchner, M. and Ziehm, M. and Niquet, S. and Haji, M. and Beier, C. and Neudecker, J. and Klauschen, F. and Mertins, P.
Nature Communications 12 (1): 3576. 11 June 2021

Optimized workflow for on-line derivatization for targeted metabolomics approach by gas chromatography-mass spectrometry.
Fritsche-Guenther, R. and Gloaguen, Y. and Bauer, A. and Opialla, T. and Kempa, S. and Fleming, C.A. and Redmond, H.P. and Kirwan, J.A.
Metabolites 11 (12): 888. 18 December 2021

Parallel genetics of regulatory sequences using scalable genome editing in vivo.
Froehlich, J.J. and Uyar, B. and Herzog, M. and Theil, K. and Glažar, P. and Akalin, A. and Rajewsky, N.
Cell Reports 35 (2): 108988. 13 April 2021

Human brain organoids assemble functionally integrated bilateral optic vesicles.
Gabriel, E. and Albanna, W. and Pasquini, Gi. and Ramani, A. and Josipovic, N. and Mariappan, A. and Schinzel, F. and Karch, C.M. and Bao, G. and Gottardo, M. and Suren, A.A. and Hescheler, J. and Nagel-Wolfrum, K. and Persico, V. and Rizzoli, S.O. and Altmüller, J. and Riparbelli, M.G. and Callaini, G. and Goureau, O. and Papantonis, A. and Busskamp, V. and Schneider, T. and Gopalakrishnan, J.
Cell Stem Cell 28 (10): 1740-1757.e8. October 2021

The polygonal cell shape and surface protein layer of anaerobic methane-oxidizing (methylomirabilis lanthanidiphila) bacteria.
Gambelli, L. and Mesman, R. and Versantvoort, W. and Diebolder, C.A. and Engel, A. and Evers, W. and Jetten, M.S.M. and Pabst, M. and Daum, B. and van Niftrik, L.
Frontiers in Microbiology 12 : 766527. 1 December 2021

Intellectual disability associated with craniofacial dysmorphism, cleft palate, and congenital heart defect due to a de novo MEIS2 mutation: a clinical longitudinal study.
Gangfuß, A. and Yigit, G. and Altmüller, J. and Nürnberg, P. and Czeschik, J.C. and Wollnik, B. and Bögershausen, N. and Burfeind, P. and Wieczorek, D. and Kaiser, F. and Roos, A. and Kölbel, H. and Schara-Schmidt, U. and Kuechler, A.
American Journal of Medical Genetics A 185 (4): 1216-1221. April 2021

Salt transiently inhibits mitochondrial energetics in mononuclear phagocytes.
Geisberger, S. and Bartolomaeus, H. and Neubert, P. and Willebrand, R. and Zasada, C. and Bartolomaeus, T. and McParland, V. and Swinnen, D. and Geuzens, A. and Maifeld, A. and Krampert, L. and Vogl, M. and Mähler, A. and Wilck, N. and Marko, L. and Tilic, E. and Forslund, S.K. and Binger, K.J. and Stegbauer, J. and Dechend, R. and Kleinewietfeld, M. and Jantsch, J. and Kempa, S. and Müller, D.N.
Circulation 144 (2): 144-158. 13 July 2021

Complement activation induces excessive T cell cytotoxicity in severe COVID-19.
Georg, P. and Astaburuaga-García, R. and Bonaguro, L. and Brumhard, S. and Michalick, L. and Lippert, L.J. and Kostevc, T. and Gäbel, C. and Schneider, M. and Streitz, M. and Demichev, V. and Gemünd, I. and Barone, M. and Tober-Lau, P. and Helbig, E.T. and Stein, J. and Dey, H.P. and Paclik, D. and Mülleder, M. and Aulakh, S.K. and Mei, H.E. and Schulz, A.R. and Hippenstiel, S. and Corman, V.M. and Beule, D. and Wyler, E. and Landthaler, M. and Obermayer-Wasserscheid, B. and Boor, P. and Demir, M. and Wesselmann, H. and Suttorp, N. and Uhrig, A. and Müller-Redetzky, H. and Nattermann, J. and Kuebler, W.M. and Meisel, C. and Ralser, M. and Schultze, J.L. and Aschenbrenner, A.C. and Thibeault, C. and Kurth, F. and Sander, L.E. and Blüthgen, N. and Sawitzki, B.
medRxiv : 2021.06.08.21258481. 11 June 2021

A novel remitting leukodystrophy associated with a variant in FBP2.
Gizak, A. and Diegmann, S. and Dreha-Kulaczewski, S. and Wiśniewski, J. and Duda, P. and Ohlenbusch, A. and Huppke, B. and Henneke, M. and Höhne, W. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Rakus, D. and Gärtner, J. and Huppke, P.
Brain Communications 3 (2): fcab036. 11 March 2021

Reliable kidney size determination by magnetic resonance imaging in pathophysiological settings.
Gladytz, T. and Millward, J.M. and Cantow, K. and Hummel, L. and Zhao, K. and Flemming, B. and Periquito, J.S. and Pohlmann, A. and Waiczies, S. and Seeliger, E. and Niendorf, T.
Acta Physiologica 233 (2): e13701. October 2021

Mitigated viral myocarditis in A/J mice by the immunoproteasome inhibitor ONX 0914 depends on inhibition of systemic inflammatory responses in CoxsackievirusB3 infection.
Goetzke, C.C. and Althof, N. and Neumaier, H.L. and Heuser, A. and Kaya, Z. and Kespohl, M. and Klingel, K. and Beling, A.
Basic Research in Cardiology 116 (1): 7. 1 February 2021

The splicing factor XAB2 interacts with ERCC1-XPF and XPG for R-loop processing.
Goulielmaki, E. and Tsekrekou, M. and Batsiotos, N. and Ascensão-Ferreira, M. and Ledaki, E. and Stratigi, K. and Chatzinikolaou, G. and Topalis, P. and Kosteas, T. and Altmüller, J. and Demmers, J.A. and Barbosa-Morais, N.L. and Garinis, G.A.
Nature Communications 12 (1): 3153. 26 May 2021

Transcriptome of iPSC-derived neuronal cells reveals a module of co-expressed genes consistently associated with autism spectrum disorder.
Griesi-Oliveira, K. and Fogo, M.S. and Pinto, B.G.G. and Alves, A.Y. and Suzuki, A.M. and Morales, A.G. and Ezquina, S. and Sosa, O.J. and Sutton, G.J. and Sunaga-Franze, D.Y. and Bueno, A.P. and Seabra, G. and Sardinha, L. and Costa, S.S. and Rosenberg, C. and Zachi, E.C. and Sertie, A.L. and Martins-de-Souza, D. and Reis, E.M. and Voineagu, I. and Passos-Bueno, M.R.
Molecular Psychiatry 26 (5): 1589-1605. May 2021

Natural compounds and synthetic drugs to target type-2 cannabinoid (CB(2)) receptor.
Guba, W. and Nazaré, M. and Grether, U.
In: New tools to interrogate endocannabinoid signalling : from natural compounds to synthetic drugs. RSC Drug Discovery Series, 76 . Royal Society of Chemistry, Croydon, 89-167. ISBN 978-1-78801-801-2 2021

Bionic tracking: using eye tracking to track biological cells in virtual reality.
Günther, U. and Harrington, K.I.S. and Dachselt, R. and Sbalzarini, I.F.
Lecture Notes in Computer Science 12535 : 280-297. 2021

Multi-channel RF supervision module for thermal magnetic resonance based cancer therapy.
Han, H. and Oberacker, E. and Kuehne, A. and Wang, S. and Eigentler, T.W. and Grass, E. and Niendorf, T.
Cancers 13 (5): 1001. 28 February 2021

Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome.
Hartlieb, S.A. and Sieverling, L. and Nadler-Holly, M. and Ziehm, M. and Toprak, U.H. and Herrmann, C. and Ishaque, N. and Okonechnikov, K. and Gartlgruber, M. and Park, Y.G. and Wecht, E.M. and Savelyeva, L. and Henrich, K.O. and Rosswog, C. and Fischer, M. and Hero, B. and Jones, D.T.W. and Pfaff, E. and Witt, O. and Pfister, S.M. and Volckmann, Ri. and Koster, J. and Kiesel, K. and Rippe, K. and Taschner-Mandl, S. and Ambros, P. and Brors, B. and Selbach, M. and Feuerbach, L. and Westermann, F.
Nature Communications 12 (1): 1269. 24 February 2021

Artificially produced gametes in mice, humans and other species.
Hayashi, K. and Galli, C. and Diecke, S. and Hildebrandt, T.B.
Reproduction Fertility and Development 33 (2): 91-101. 8 January 2021

Long-term in vitro expansion ensures increased yield of central memory T cells as perspective for manufacturing challenges.
Herda, S. and Heimann, A. and Obermayer, B. and Ciraolo, E. and Althoff, S. and Ruß, J. and Grunert, C. and Busse, A. and Bullinger, L. and Pezzutto, A. and Blankenstein, T. and Beule, D. and Na, I.K.
International Journal of Cancer 148 (12): 3097-3110. 15 June 2021

Simultaneous T(2) and T(2)* mapping of multiple sclerosis lesions with radial RARE-EPI.
Herrmann, C. and Els, A. and Boehmert, L. and Periquito, J. and Eigentler, T.W. and Millward, J. and Waiczies, S. and Kuchling, J. and Paul, F. and Niendorf, T.
Magnetic Resonance in Medicine 86 (3): 1383-1402. September 2021

High Yap and Mll1 promote a persistent regenerative cell state induced by Notch signaling and loss of p53.
Heuberger, J. and Grinat, J. and Kosel, F. and Liu, L. and Kunz, S. and Vidal, R.O. and Keil, M. and Haybaeck, J. and Robine, S. and Louvard, D. and Regenbrecht, C. and Sporbert, A. and Sauer, S. and von Eyss, B. and Sigal, M. and Birchmeier, W.
Proceedings of the National Academy of Sciences of the United States of America 118 (22): e2019699118. 1 June 2021

The ART of bringing extinction to a freeze - history and future of species conservation, exemplified by rhinos.
Hildebrandt, T.B. and Hermes, R. and Goeritz, F. and Appeltant, R. and Colleoni, S. and de Mori, B. and Diecke, S. and Drukker, M. and Galli, C. and Hayashi, K. and Lazzari, G. and Loi, P. and Payne, J. and Renfree, M. and Seet, S. and Stejskal, J. and Swegen, A. and Williams, S.A. and Zainuddin, Z.Z. and Holtze, S.
Theriogenology 169 : 76-88. 15 July 2021

Conservation research in times of COVID-19 - the rescue of the northern white rhino.
Hildebrandt, T.B. and Holtze, S. and Biasetti, P. and Colleoni, S. and de Mori, B. and Diecke, S. and Göritz, F. and Hayashi, K. and Hayashi, M. and Hermes, R. and Kariuki, L. and Lazzari, G. and Mijele, D. and Mutisya, S. and Ndeereh, D. and Ngulu, S. and Seet, S. and Zwilling, J. and Zywitza, V. and Stejskal, J. and Galli, C.
Journal of Applied Animal Ethics Research 3 (1): 16-37. May 2021

Expression of a modified astrocytic glutamate transporter alleviates Huntington’s hypokinesia, promotes synaptic glutamate clearance and counteracts potentially adverse EAAT2 interactions.
Hirschberg, S. and Dvorzhak, A. and Rasooli-Nejad, S.M.A. and Angelov, S. and Kirchner, M. and Mertins, P. and Lättig-Tünnemann, G. and Harms, C. and Schmitz, D. and Grantyn, R.
bioRxiv : 2020.09.17.302158. 26 March 2021

A prospective of multiple biopharmaceutical activities of procyanidins‐rich Uapaca togoensis pax extracts: HPLC‐ESI‐TOF‐MS coupled with bioinformatics analysis.
Ibrahime Sinan, K. and Aktumsek, A. and de la Luz Cádiz‐Gurrea, M. and Leyva‐Jiménez, F.J. and Fernández-Ochoa, Á. and Segura‐Carretero, A. and Glamocilja, J. and Sokovic, M. and Nenadić, M. and Zengin, G.
Chemistry & Biodiversity 18 (8): e2100299. 18 August 2021

MACC1 regulates clathrin-mediated endocytosis and receptor recycling of transferrin receptor and EGFR in colorectal cancer.
Imbastari, F. and Dahlmann, M. and Sporbert, A. and Ciolli Mattioli, C. and Mari, T. and Scholz, F. and Timm, L. and Twamley, S. and Migotti, R. and Walther, W. and Dittmar, G. and Rehm, A. and Stein, U.
Cellular and Molecular Life Sciences 78 (7): 3525-3542. April 2021

Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndrome.
Inak, G. and Rybak-Wolf, A. and Lisowski, P. and Pentimalli, T.M. and Jüttner, R. and Glažar, P. and Uppal, K. and Bottani, E. and Brunetti, D. and Secker, C. and Zink, A. and Meierhofer, D. and Henke, M.T. and Dey, M. and Ciptasari, U. and Mlody, B. and Hahn, T. and Berruezo-Llacuna, M. and Karaiskos, N. and Di Virgilio, M. and Mayr, J.A. and Wortmann, S.B. and Priller, J. and Gotthardt, M. and Jones, D.P. and Mayatepek, E. and Stenzel, W. and Diecke, S. and Kühn, R. and Wanker, E.E. and Rajewsky, N. and Schuelke, M. and Prigione, A.
Nature Communications 12 (1): 1929. 26 March 2021

Biallelic variants in PCDHGC4 cause a novel neurodevelopmental syndrome with progressive microcephaly, seizures, and joint anomalies.
Iqbal, M. and Maroofian, R. and Çavdarlı, B. and Riccardi, F. and Field, M. and Banka, S. and Bubshait, D.K. and Li, Y. and Hertecant, J. and Baig, S.M. and Dyment, D. and Efthymiou, S. and Abdullah, U. and Makhdoom, E.U.H. and Ali, Z. and Scherf de Almeida, T and Molinari, F. and Mignon-Ravix, C. and Chabrol, B. and Antony, J. and Ades, L. and Pagnamenta, A.T. and Jackson, A. and Douzgou, S. and Beetz, C. and Karageorgou, V. and Vona, B. and Rad, A. and Baig, J.M. and Sultan, T. and Alvi, J.R. and Maqbool, S. and Rahman, F. and Toosi, M.B. and Ashrafzadeh, F. and Imannezhad, S. and Karimiani, E.G. and Sarwar, Y. and Khan, S. and Jameel, M. and Noegel, A.A. and Budde, B. and Altmüller, J. and Motameny, S. and Höhne, W. and Houlden, H. and Nürnberg, P. and Wollnik, B. and Villard, L. and Alkuraya, F.S. and Osmond, M. and Hussain, M.S. and Yigit, G.
Genetics in Medicine 23 (11): 2138-2149. November 2021

Dolosigranulum pigrum modulates immunity against SARS-CoV-2 in respiratory epithelial cells.
Islam, M.A. and Albarracin, L. and Melnikov, V. and Andrade, B.G.N. and Cuadrat, R.R.C. and Kitazawa, H. and Villena, J.
Pathogens 10 (6): 634. 21 May 2021

Immunobiotic Lactobacilli improve resistance of respiratory epithelial cells to SARS-CoV-2 infection.
Islam, M.A. and Albarracin, L. and Tomokiyo, M. and Valdez, J.C. and Sacur, J. and Vizoso-Pinto, M.G. and Andrade, B.G.N. and Cuadrat, R.C. and Kitazawa, H. and Villena, J.
Pathogens 10 (9): 1197. September 2021

Analysis of renal diffusion-weighted imaging (DWI) using apparent diffusion coefficient (ADC) and intravoxel incoherent motion (IVIM) models.
Jerome, N.P. and Periquito, J.S.
Methods in Molecular Biology 2216 : 611-635. 2021

Self-sustaining interleukin-8 loops drive a prothrombotic neutrophil phenotype in severe COVID-19.
Kaiser, R. and Leunig, A. and Pekayvaz, K. and Popp, O. and Joppich, M. and Polewka, V. and Escaig, R. and Anjum, A. and Hoffknecht, M.L. and Gold, C. and Brambs, S. and Engel, A. and Stockhausen, S. and Knottenberg, V. and Titova, A. and Haji, M. and Scherer, C. and Muenchhoff, M. and Hellmuth, J.C. and Saar, K. and Schubert, B. and Hilgendorff, A. and Schulz, C. and Kääb, S. and Zimmer, R. and Hübner, N. and Massberg, S. and Mertins, P. and Nicolai, L. and Stark, K.
JCI Insight 6 (18): e150862. 22 September 2021

Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology.
Kargapolova, Y. and Rehimi, R. and Kayserili, H. and Brühl, J. and Sofiadis, K. and Zirkel, A. and Palikyras, S. and Mizi, A. and Li, Y. and Yigit, G. and Hoischen, A. and Frank, S. and Russ, N. and Trautwein, J. and van Bon, B. and Gilissen, C. and Laugsch, M. and Gusmao, E.G. and Josipovic, N. and Altmüller, J. and Nürnberg, P. and Längst, G. and Kaiser, F.J. and Watrin, E. and Brunner, H. and Rada-Iglesias, A. and Kurian, L. and Wollnik, B. and Bouazoune, K. and Papantonis, A.
Nature Communications 12 (1): 3014. 21 May 2021

Preparation and monitoring of small animals in renal MRI.
Kaucsar, T. and Hosszu, A. and Seeliger, E. and Reimann, H.M. and Fekete, A.
Methods in Molecular Biology 2216 : 45-55. 2021

Genomic variants causing mitochondrial dysfunction are common in hereditary lower motor neuron disease.
Keller, N. and Paketci, C. and Altmueller, J. and Fuhrmann, N. and Wunderlich, G. and Schrank, B. and Unver, O. and Yilmaz, S. and Boostani, R. and Karimiani, E.G. and Motameny, S. and Thiele, H. and Nürnberg, P. and Maroofian, R. and Yis, U. and Wirth, Br. and Karakaya, M.
Human Mutation 42 (4): 460-472. April 2021

Profiling of sub-lethal in vitro effects of multi-walled carbon nanotubes reveals changes in chemokines and chemokine receptors.
Keshavan, S. and Andón, F.T. and Gallud, A. and Chen, W. and Reinert, K. and Tran, L. and Fadeel, B.
Nanomaterials 11 (4): 883. 30 March 2021

MFSD2A-associated primary microcephaly - expanding the clinical and mutational spectrum of this ultra-rare disease.
Khuller, K. and Yigit, G. and Martínez Grijalva, C. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Elcioglu, N.H. and Yeter, B. and Hehr, U. and Stein, A. and Della Marina, A. and Köninger, A. and Depienne, C. and Kaiser, F.J. and Wollnik, B. and Kuechler, A.
European Journal of Medical Genetics 64 (10): 104310. October 2021

Design and synthesis of novel fluorescently labeled analogs of vemurafenib targeting MKK4.
Kircher, T. and Pantsar, T. and Oder, A. and von Kries, J.P. and Juchum, M. and Pfaffenrot, B. and Kloevekorn, P. and Albrecht, W. and Selig, R. and Laufer, S.
European Journal of Medicinal Chemistry 2019 : 112901. 1 January 2021

ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF–containing protein that controls root growth angle in barley and wheat.
Kirschner, G.K. and Rosignoli, S. and Guo, L. and Vardanega, I. and Imani, J. and Altmüller, J. and Milner, S.G. and Balzano, R: and Nagel, K.A. and Pflugfelder, D. and Forestan, C. and Bovina, R. and Koller, R. and Stöcker, T.G. and Mascher, M. and Simmonds, J. and Uauy, C. and Schoof, H. and Tuberosa, R. and Salvi, S. and Hochholdinger, F.
Proceedings of the National Academy of Sciences of the United States of America 118 (35): e2101526118. 31 August 2021

ANK3 related neurodevelopmental disorders: expanding the spectrum of heterozygous loss-of-function variants.
Kloth, K. and Lozic, B. and Tagoe, J. and Hoffer, M.J.V. and Van der Ven, A. and Thiele, H. and Altmüller, J. and Kubisch, C. and Au, P.Y.B. and Denecke, J. and Bijlsma, E.K. and Lessel, D.
Neurogenetics 22 (4): 263-269. October 2021

The newly identified MEK1 tyrosine phosphorylation target MACC1 is druggable by approved MEK1 inhibitors to restrict colorectal cancer metastasis.
Kobelt, D. and Perez-Hernandez, D. and Fleuter, C. and Dahlmann, M. and Zincke, F. and Smith, J. and Migotti, R. and Popp, O. and Burock, S. and Walther, W. and Dittmar, G. and Mertins, P. and Stein, U.
Oncogene 40 (34): 5286-5301. 26 August 2021

Niche stiffening compromises hair follicle stem cell potential during ageing by reducing bivalent promoter accessibility.
Koester, J. and Miroshnikova, Y.A. and Ghatak, S. and Chacón-Martínez, C.A. and Morgner, J. and Li, X. and Atanassov, I. and Altmüller, J. and Birk, D.E. and Koch, M. and Bloch, W. and Bartusel, M. and Niessen, C.M. and Rada-Iglesias, A. and Wickström, S.A.
Nature Cell Biology 23 (7): 771-781. July 2021

An identical-by-descent novel splice-donor variant in PRUNE1 causes a neurodevelopmental syndrome with prominent dystonia in two consanguineous Sudanese families.
Koko, M. and Yahia, A. and Elsayed, L.E. and Hamed, A.A. and Mohammed, I.N. and Elseed, M.A. and Hamad, M.H.A. and Babai, A.M. and Siddig, R.A. and Abd Allah, A.S.I. and Mohamed, M. and El-Amin, M. and Esteves, T. and Altmüller, J. and Toliat, M.R. and Thiele, H. and Nürnberg, P. and Salih, M.A. and Ahmed, A.E. and Lerche, H. and Stevanin, G.
Annals of Human Genetics 85 (5): 186-195. September 2021

Transcriptional repression of NFKBIA triggers constitutive IKK- and proteasome-independent p65/RelA activation in senescence.
Kolesnichenko, M. and Mikuda, N. and Höpken, U.E. and Kärgel, E. and Uyar, B. and Tufan, A.B. and Milanovic, M. and Sun, W. and Krahn, I. and Schleich, K. and von Hoff, L. and Hinz, M. and Willenbrock, M. and Jungmann, S. and Akalin, A. and Lee, S. and Schmidt-Ullrich, R. and Schmitt, C.A. and Scheidereit, C.
EMBO Journal 40 (6): e104296. 15 March 2021

Simultaneous dimensionality reduction and integration for single-cell ATAC-seq data using deep learning.
Kopp, W. and Akalin, A. and Ohler, U.
bioRxiv : 2021.05.11.443540. 12 May 2021

Effects of daytime dry fasting on hydration, glucose metabolism and circadian phase: a prospective exploratory cohort study in Bahá'í volunteers.
Koppold-Liebscher, D.A. and Klatte, C. and Demmrich, S. and Schwarz, J. and Kandil, F.I. and Steckhan, N. and Ring, R. and Kessler, C.S. and Jeitler, M. and Koller, B. and Ananthasubramaniam, B. and Eisenmann, C. and Mähler, A. and Boschmann, M. and Kramer, A. and Michalsen, A.
Frontiers in Nutrition 8 : 662310. July 2021

Protein synthesis in the developing neocortex at near-atomic resolution reveals Ebp1-mediated neuronal proteostasis at the 60S tunnel exit.
Kraushar, M.L. and Krupp, F. and Harnett, D. and Turko, P. and Ambrozkiewicz, M.C. and Sprink, T. and Imami, K. and Günnigmann, M. and Zinnall, U. and Vieira-Vieira, C.H. and Schaub, T. and Münster-Wandowski, A. and Bürger, J. and Borisova, E. and Yamamoto, H. and Rasin, M.R. and Ohler, U. and Beule, D. and Mielke, T. and Tarabykin, V. and Landthaler, M. and Kramer, G. and Vida, I. and Selbach, M. and Spahn, C.M.T.
Molecular Cell 81 (2): 304-322. 21 January 2021

Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19.
Krämer, B. and Knoll, R. and Bonaguro, L. and ToVinh, M. and Raabe, J. and Astaburuaga-García, R. and Schulte-Schrepping, J. and Kaiser, K.M. and Rieke, G.J. and Bischoff, J. and Monin, M.B. and Hoffmeister, C. and Schlabe, S. and De Domenico, E. and Reusch, N. and Händler, K. and Reynolds, G. and Blüthgen, N. and Hack, G. and Finnemann, C. and Nischalke, H.D. and Strassburg, C.P. and Stephenson, E. and Su, Y. and Gardner, L. and Yuan, D. and Chen, D. and Goldman, J. and Rosenstiel, P. and Schmidt, S.V. and Latz, E. and Hrusovsky, K. and Ball, A.J. and Johnson, J.M. and Koenig, P.A. and Schmidt, F.I. and Haniffa, M. and Heath, J.R. and Kümmerer, B.M. and Keitel, V. and Jensen, B. and Stubbemann, P. and Kurth, F. and Sander, L.E. and Sawitzki, B. and Aschenbrenner, A.C. and Schultze, J.L. and Nattermann, J.
Immunity 54 (11): 2650-2669. 9 November 2021

Noninvasive renal perfusion measurement using arterial spin labeling (ASL) MRI: basic concept.
Ku, M.C. and Fernández-Seara, M.A. and Kober, F. and Niendorf, T.
Methods in Molecular Biology 2216 : 229-239. 2021

Cardiovascular magnetic resonance detects microvascular dysfunction in a mouse model of hypertrophic cardiomyopathy.
Ku, M.C. and Kober, F. and Lai, Y.C. and Pohlmann, A. and Qadri, F. and Bader, M. and Carrier, L. and Niendorf, T.
Journal of Cardiovascular Magnetic Resonance 23 (1): 63. 31 May 2021

Fluorine ((19)F) MRI for assessing inflammatory cells in the kidney: experimental protocol.
Ku, M.C. and Schreiber, A. and Delgado, P.R. and Boehm-Sturm, P. and Kettritz, R. and Niendorf, T. and Pohlmann, A. and Waiczies, S.
Methods in Molecular Biology 2216 : 495-507. 2021

Generation of human brain organoids for mitochondrial disease modeling.
Le, S. and Petersilie, L. and Inak, G. and Menacho-Pando, C. and Kafitz, K.W. and Rybak-Wolf, A. and Rajewsky, N. and Rose, C.R. and Prigione, A.
Journal of Visualized Experiments (172): e62756. 21 June 2021

Virus-induced senescence is driver and therapeutic target in COVID-19.
Lee, S. and Yu, Y. and Trimpert, J. and Benthani, F. and Mairhofer, M. and Richter-Pechanska, P. and Wyler, E. and Belenki, D. and Kaltenbrunner, S. and Pammer, M. and Kausche, L. and Firsching, T.C. and Dietert, K. and Schotsaert, M. and Martínez-Romero, C. and Singh, G. and Kunz, S. and Niemeyer, D. and Ghanem, R. and Salzer, H.J.F. and Paar, C. and Mülleder, M. and Uccellini, M. and Michaelis, E.G. and Khan, A. and Lau, A. and Schönlein, M. and Habringer, A. and Tomasits, J. and Adler, J.M. and Kimeswenger, S. and Gruber, A.D. and Hoetzenecker, W. and Steinkellner, H. and Purfuerst, B. and Motz, R. and Di Pierro, F. and Lamprecht, B. and Osterrieder, N. and Landthaler, M. and Drosten, C. and García-Sastre, A. and Langer, R. and Ralser, M. and Eils, R. and Reimann, M. and Fan, D.N.Y. and Schmitt, C.A.
Nature 599 : 283-289. 11 November 2021

Development of a 1,2,4-triazole-based lead tankyrase inhibitor: part II.
Leenders, R.G.G. and Brinch, S.A. and Sowa, S.T. and Amundsen-Isaksen, E. and Galera-Prat, A. and Murthy, S. and Aertssen, S. and Smits, J.N. and Nieczypor, P. and Damen, E. and Wegert, A. and Nazaré, M. and Lehtiö, L. and Waaler, J. and Krauss, S.
Journal of Medicinal Chemistry 64 (24): 17936-17949. 23 December 2021

Nuclei isolation from adult mouse kidney for single-nucleus RNA-sequencing.
Leiz, J. and Hinze, C. and Boltengagen, A. and Braeuning, C. and Kocks, C. and Rajewsky, N. and Schmidt-Ott, K.M.
Journal of Visualized Experiments (175): e62901. September 2021

Predicting lethal courses in critically ill COVID-19 patients using a machine learning model trained on patients with non-COVID-19 viral pneumonia.
Lichtner, G. and Balzer, F. and Haufe, S. and Giesa, N. and Schiefenhövel, F. and Schmieding, M. and Jurth, C. and Kopp, W. and Akalin, A. and Schaller, S.J. and Weber-Carstens, S. and Spies, C. and von Dincklage, F.
Scientific Reports 11 (1): 13205. 24 June 2021

Resting state brain network functional connectivity is not associated with inflammatory markers and blood cell counts in older adults.
Lichtner, G. and Zacharias, N. and Spies, C.D. and Feinkohl, I. and Winterer, G. and Pischon, T. and von Dincklage, F.
Clinical Neurophysiology 132 (7): 1677-1686. July 2021

hiPSC-derived epidermal keratinocytes from ichthyosis patients show altered expression of cornification markers.
Lima Cunha, D. and Oram, A. and Gruber, R. and Plank, R. and Lingenhel, A. and Gupta, M.K. and Altmüller, J. and Nürnberg, P. and Schmuth, M. and Zschocke, J. and Šarić, T. and Eckl, K.M. and Hennies, H.C.
International Journal of Molecular Sciences 22 (4): 1785. 2 February 2021

Multiomic characterization of oncogenic signaling mediated by wild-type and mutant RIT1.
Lo, A. and Holmes, K. and Kamlapurkar, S. and Mundt, F. and Moorthi, S. and Fung, I. and Fereshetian, S. and Watson, J. and Carr, S.A. and Mertins, P. and Berger, A.H.
Science Signaling 14 (711): eabc4520. 30 November 2021

Microglia sense neuronal activity via GABA in the early postnatal hippocampus.
Logiacco, F. and Xia, P. and Georgiev, S.V. and Franconi, C. and Chang, Y.J. and Ugursu, B. and Sporbert, A. and Kühn, R. and Kettenmann, H. and Semtner, M.
Cell Reports 37 (13): 110128. 28 December 2021

Photocaged Hoechst enables subnuclear visualization and cell selective staining of DNA in vivo.
Lämmle, C.A. and Varady, A. and Müller, T.G. and Sturtzel, C. and Riepl, M. and Mathes, B. and Eichhorst, J. and Sporbert, A. and Lehmann, M. and Kräusslich, H.G. and Distel, M. and Broichhagen, J.
ChemBioChem 22 (3): 548-556. 2 February 2021

Age-related decline in murine heart and skeletal muscle performance is attenuated by reduced Ahnak1 expression.
Mahmoodzadeh, S. and Koch, K. and Schriever, C. and Xu, J. and Steinecker, M. and Leber, J. and Dworatzek, E. and Purfürst, B. and Kunz, S. and Recchia, D. and Canepari, M. and Heuser, A. and Di Francescantonio, S. and Morano, I.
Journal of Cachexia Sarcopenia and Muscle 12 : 1249-1265. 14 October 2021

Modifier genes in microcephaly: a report on WDR62, CEP63, RAD50 and PCNT variants exacerbating disease caused by biallelic mutations of ASPM and CENPJ.
Makhdoom, E.U.H. and Waseem, S.S. and Iqbal, M. and Abdullah, U. and Hussain, G. and Asif, M. and Budde, B. and Höhne, W. and Tinschert, S. and Saadi, S.M. and Yousaf, H. and Ali, Z. and Fatima, A. and Kaygusuz, E. and Khan, A. and Jameel, M. and Khan, S. and Tariq, M. and Anjum, I. and Altmüller, J. and Thiele, H. and Höning, S. and Baig, S.M. and Nürnberg, P. and Hussain, M.S.
Genes 12 (5): 731. May 2021

Lipid metabolite biomarkers in cardiovascular disease: discovery and biomechanism translation from human studies.
McGranaghan, P. and Kirwan, J.A. and Garcia-Rivera, M.A. and Pieske, B. and Edelmann, F. and Blaschke, F. and Appunni, S. and Saxena, A. and Rubens, M. and Veledar, E. and Trippel, T.D.
Metabolites 11 (9): 621. September 2021

Identification of disease-relevant modulators of the SHH pathway in the developing brain.
Mecklenburg, N. and Kowalczyk, I. and Witte, F. and Görne, J. and Laier, A. and Mamo, T.M. and Gonschior, H. and Lehmann, M. and Richter, M. and Sporbert, A. and Purfürst, B. and Hübner, N. and Hammes, A.
Development 148 (17): dev199307. September 2021

Lymphocyte access to lymphoma is impaired by high endothelial venule regression.
Menzel, L. and Zschummel, M. and Crowley, T. and Franke, V. and Grau, M. and Ulbricht, C. and Hauser, A. and Siffrin, V. and Bajénoff, M. and Acton, S.E. and Akalin, A. and Lenz, G. and Willimsky, G. and Höpken, U.E. and Rehm, A.
Cell Reports 37 (4): 109878. 26 October 2021

PHACTR1 genetic variability is not critical in small vessel ischemic disease patients and PcomA recruitment in C57BL/6J mice.
Messerschmidt, C. and Foddis, M. and Blumenau, S. and Müller, S. and Bentele, K. and Holtgrewe, M. and Kun-Rodrigues, C. and Alonso, I. and do Carmo Macario, M. and Morgadinho, A.S. and Velon, A.G. and Santo, G. and Santana, I. and Mönkäre, S. and Kuuluvainen, L. and Schleutker, J. and Pöyhönen, M. and Myllykangas, L. and Senatore, A. and Berchtold, D. and Winek, K. and Meisel, A. and Pavlovic, A. and Kostic, V. and Dobricic, V. and Lohmann, E. and Hanagasi, H. and Guven, G. and Bilgic, B. and Bras, J. and Guerreiro, R. and Beule, D. and Dirnagl, U. and Sassi, C.
Scientific Reports 11 (1): 6072. 16 March 2021

Preparation of ex vivo rodent phantoms for developing, testing, and training MR imaging of the kidney and other organs.
Millward, J.M. and Periquito, J.S. and Delgado, P.R. and Prinz, C. and Niendorf, T. and Waiczies, S.
Methods in Molecular Biology 2216 : 75-85. 2021

Abrogating GPT2 in triple negative breast cancer inhibits tumor growth and promotes autophagy.
Mitra, D. and Vega-Rubin-de-Celis, S. and Royla, N. and Bernhardt, S. and Wilhelm, H. and Tarade, N. and Poschet, G. and Buettner, M. and Binenbaum, I. and Borgoni, S. and Vetter, M. and Kantelhardt, E.J. and Thomssen, C. and Chatziioannou, A. and Hell, R. and Kempa, S. and Müller-Decker, K. and Wiemann, S.
International Journal of Cancer 148 (8): 1993-2009. 15 April 2021

Phenylalanine-hydroxylase contributes to serotonin synthesis in mice.
Mordhorst, A. and Dhandapani, P. and Matthes, S. and Mosienko, V. and Rothe, M. and Todiras, M. and Self, J. and Schunck, W.H. and Schütz, A. and Bader, M. and Alenina, N.
FASEB Journal 35 (6): e21648. June 2021

Metabolic response to daytime dry fasting in Bahá'í volunteers -- results of a preliminary study.
Mähler, A. and Jahn, C. and Klug, L. and Klatte, C. and Michalsen, A. and Koppold-Liebscher, D. and Boschmann, M.
Nutrients 14 (1): 148. 29 December 2021

3D FIB-SEM reconstruction of microtubule-organelle interaction in whole primary mouse β cells.
Müller, A. and Schmidt, D. and Xu, C.S. and Pang, S. and D'Costa, J.V. and Kretschmar, S. and Münster, C. and Kurth, T. and Jug, F. and Weigert, M. and Hess, H.F. and Solimena, M.
Journal of Cell Biology 220 (2): e202010039. 1 February 2021

Ophthalmic magnetic resonance imaging: where are we (heading to)?
Niendorf, T. and Beenakker, J.W.M. and Langner, S. and Erb-Eigner, K. and Bach Cuadra, M. and Beller, E. and Millward, J.M. and Niendorf, T.M. and Stachs, O.
Current Eye Research 46 (9): 1251-1270. September 2021

Preface.
Niendorf, T. and Pohlmann, A.
Methods in Molecular Biology 2216 : v-vi. 2021

Maternal angiotensin increases placental leptin in early gestation via an alternative renin-angiotensin system pathway: suggesting a link to preeclampsia.
Nonn, O. and Fischer, C. and Geisberger, S. and El-Heliebi, A. and Kroneis, T. and Forstner, D. and Desoye, G. and Staff, A.C. and Sugulle, M. and Dechend, R. and Pecks, U. and Kollmann, M. and Stern, C. and Cartwright, J.E. and Whitley, G.S. and Thilaganathan, B. and Wadsack, C. and Huppertz, B. and Herse, F. and Gauster, M.
Hypertension 77 (5): 1723-1736. May 2021

Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19.
Nouailles, G. and Wyler, E. and Pennitz, P. and Postmus, D. and Vladimirova, D. and Kazmierski, J. and Pott, F. and Dietert, K. and Muelleder, M. and Farztdinov, V. and Obermayer, B. and Wienhold, S.M. and Andreotti, S. and Hoefler, T. and Sawitzki, B. and Drosten, C. and Sander, L.E. and Suttorp, N. and Ralser, M. and Beule, D. and Gruber, A.D. and Goffinet, C. and Landthaler, M. and Trimpert, J. and Witzenrath, M.
Nature Communications 12 (1): 4869. 11 August 2021

Longitudinal omics in Syrian hamsters integrated with human data unravel cellular effector responses to moderate COVID-19.
Nouailles, Geraldine and Wyler, E. and Pennitz, P. and Postmus, D. and Vladrimirova, D. and Kazmierski, J. and Pott, F. and Dietert, K. and Mülleder, M.l and Farztdinov, V. and Obermayer, B. and Wienhold, S.M. and Andreotti, S. and Hoefler, T. and Sawitzki, B. and Drosten, C. and Sander, L. and Suttorp, N. and Ralser, M. and Beule, D. and Gruber, A. and Goffinet, C. and Landthaler, M. and Trimpert, J. and Witzenrath, M.
Research Square : rs-148392/v1. 28 January 2021

Urbanization promotes specific bacteria in freshwater microbiomes including potential pathogens.
Numberger, D. and Zoccarato, L. and Woodhouse, J. and Ganzert, L. and Sauer, S. and Grossart, H.P. and Greenwood, A.D.
bioRxiv : 2020.06.26.173328. 8 November 2021

Improvement in the prediction of neonatal hypoxic-ischemic encephalopathy with the integration of umbilical cord metabolites and current clinical makers.
O'Boyle, D.S. and Dunn, W.B. and O'Neill, D. and Kirwan, J.A. and Broadhurst, D.I. and Hallberg, B. and Boylan, G.B. and Murray, D.M.
Journal of Pediatrics 229 : 175-181. February 2021

Patient-specific planning for thermal magnetic resonance of glioblastoma multiforme.
Oberacker, E. and Diesch, C. and Nadobny, J. and Kuehne, A. and Wust, P. and Ghadjar, P. and Niendorf, T.
Cancers 13 (8): 1867. 2 April 2021

A semi-automated organoid screening method demonstrates epigenetic control of intestinal epithelial differentiation.
Ostrop, J. and Zwiggelaar, R.T. and Terndrup Pedersen, M. and Gerbe, F. and Bösl, K. and Lindholm, H.T. and Díez-Sánchez, A. and Parmar, N. and Radetzki, S. and von Kries, J.P. and Jay, P. and Jensen, K.B. and Arrowsmith, C. and Oudhoff, M.J.
Frontiers in Cell and Developmental Biology 8 : 618552. 21 January 2021

Altered DNA methylation profiles in SF3B1 mutated CLL patients.
Pacholewska, A. and Grimm, C. and Herling, C.D. and Lienhard, M. and Königs, A. and Timmermann, B. and Altmüller, J. and Mücke, O. and Reinhardt, H.C. and Plass, C. and Herwig, R. and Hallek, M. and Schweiger, M.R.
International Journal of Molecular Sciences 22 (17): 9337. 1 September 2021

Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infection.
Pekayvaz, K. and Leunig, A. and Kaiser, R. and Brambs, S. and Joppich, M. and Janjic, A. and Popp, O. and Polewka, V. and Wange, L.E. and Gold, C. and Kirchner, M. and Muenchhoff, M. and Hellmuth, J.C. and Scherer, C. and Eser, T. and Deák, F. and Kuhl, N. and Linder, A. and Saar, K. and Tomas, L. and Schulz, C. and Enard, W. and Kroidl, I. and Geldmacher, C. and von Bergwelt-Baildon, M. and Keppler, O.T. and Zimmer, R. and Mertins, P. and Hubner, N. and Hölscher, M. and Massberg, S. and Stark, K. and Nicolai, L.
bioRxiv : 2021.02.03.429351. 3 February 2021

Community-wide experimental evaluation of the PROSS stability-design method.
Peleg, Y. and Vincentelli, R. and Collins, B.M. and Chen, K.E. and Livingstone, E.K. and Weeratunga, S. and Leneva, N. and Guo, Q. and Remans, K. and Perez, K. and Bjerga, G.E.K. and Larsen, Ø. and Vaněk, O. and Skořepa, O. and Jacquemin, S. and Poterszman, A. and Kjaer, S. and Christodoulou, E. and Albeck, S. and Dym, O. and Ainbinder, E. and Unger, T. and Schuetz, A. and Matthes, S. and Bader, M. and de Marco, A. and Storici, P. and Semrau, M.S. and Stolt-Bergner, P. and Aigner, C. and Suppmann, S. and Goldenzweig, A. and Fleishman, S.J.
Journal of Molecular Biology 433 (13): 166964. 25 June 2021

Continuous diffusion spectrum computation for diffusion-weighted magnetic resonance imaging of the kidney tubule system.
Periquito, J.S. and Gladytz, T. and Millward, J.M. and Delgado, P.R. and Cantow, K. and Grosenick, D. and Hummel, L. and Anger, A. and Zhao, K. and Seeliger, E. and Pohlmann, A. and Waiczies, S. and Niendorf, T.
Quantitative Imaging in Medicine and Surgery 11 (7): 3098-3119. July 2021

Renal MRI diffusion: experimental protocol.
Periquito, J.S. and Meier, M. and Niendorf, T. and Pohlmann, A. and Jerome, N.P.
Methods in Molecular Biology 2216 : 419-428. 2021

Analysis protocols for MRI mapping of the blood oxygenation-sensitive parameters T(2)* and T(2) in the kidney.
Periquito, J.S. and Starke, L. and Santos, C.M. and Freitas, A.C. and Loução, N. and Polo, P.G. and Nunes, R.G. and Niendorf, T. and Pohlmann, A.
Methods in Molecular Biology 2216 : 591-610. 2021

Variant profiling of colorectal adenomas from three patients of two families with MSH3-related adenomatous polyposis.
Perne, C. and Peters, S. and Cartolano, M. and Horpaopan, S. and Grimm, C. and Altmüller, J. and Sommer, A.K. and Hillmer, A.M. and Thiele, H. and Odenthal, M. and Möslein, G. and Adam, R. and Sivalingam, S. and Kirfel, J. and Schweiger, M.R. and Peifer, M. and Spier, I. and Aretz, S.
PLoS ONE 16 (11): e0259185. 29 November 2021

An expanded polyproline domain maintains mutant huntingtin soluble in vivo and during aging.
Pigazzini, M.L. and Lawrenz, M. and Margineanu, A. and Kaminski Schierle, G.S. and Kirstein, J.
Frontiers in Molecular Neuroscience 14 : 721749. 15 October 2021

Identification and characterization of human observational studies in nutritional epidemiology on gut microbiomics for joint data analysis.
Pinart, M. and Nimptsch, K. and Forslund, S.K. and Schlicht, K. and Gueimonde, M. and Brigidi, P. and Turroni, S. and Ahrens, W. and Hebestreit, A. and Wolters, M. and Dötsch, A. and Nöthlings, U. and Oluwagbemigun, K. and Cuadrat, R.R.C. and Schulze, M.B. and Standl, M. and Schloter, M. and De Angelis, M. and Iozzo, P. and Guzzardi, M.A. and Vlaemynck, G. and Penders, J. and Jonkers, D.M.A.E. and Stemmer, M. and Chiesa, G. and Cavalieri, D. and De Filippo, C. and Ercolini, D. and De Filippis, F. and Ribet, D. and Achamrah, N. and Tavolacci, M.P. and Déchelotte, P. and Bouwman, J. and Laudes, M. and Pischon, T.
Nutrients 13 (9): 3292. September 2021

Exploration of analgesia with tramadol in the Coxsackievirus B3 myocarditis mouse model.
Pinkert, S. and Kespohl, M. and Kelm, N. and Kaya, Z. and Heuser, A. and Klingel, K. and Beling, A.
Viruses 13 (7): 1222. 24 June 2021

BMI and mortality - time to revisit current recommendations for risk assessment.
Pischon, T.
American Journal of Clinical Nutrition 113 (1): 3-4. January 2021

Recommendations for preclinical renal MRI: a comprehensive open-access protocol collection to improve training, reproducibility, and comparability of studies.
Pohlmann, A. and Back, S.J. and Fekete, A. and Friedli, I. and Hectors, S. and Jerome, N.P. and Ku, M.C. and Longo, D.L. and Meier, M. and Millward, J.M. and Periquito, J.S. and Seeliger, E. and Serai, S.D and Waiczies, S. and Sourbron, S. and Laustsen, C. and Niendorf, T.
Methods in Molecular Biology 2216 : 3-23. 2021

Essential practical steps for MRI of the kidney in experimental research.
Pohlmann, A. and Periquito, J.S. and Niendorf, T.
Methods in Molecular Biology 2216 : 349-367. 2021

Experimental protocol for MRI mapping of the blood oxygenation-sensitive parameters T(2)* and T(2) in the kidney.
Pohlmann, A. and Zhao, K. and Fain, S.B. and Prasad, P.V. and Niendorf, T.
Methods in Molecular Biology 2216 : 403-417. 2021

In vivo detection of teriflunomide-derived fluorine signal during neuroinflammation using fluorine MR spectroscopy.
Prinz, C. and Starke, L. and Millward, J.M. and Fillmer, A. and Delgado, P.R. and Waiczies, H. and Pohlmann, A. and Rothe, M. and Nazaré, M. and Paul, F. and Niendorf, T. and Waiczies, S.
Theranostics 11 (6): 2490-2504. 1 January 2021

Pentafluorosulfanyl (SF(5)) as a superior (19)F magnetic resonance reporter group: signal detection and biological activity of teriflunomide derivatives.
Prinz, C. and Starke, L. and Ramspoth, T.F. and Kerkering, J. and Martos Riaño, V. and Paul, J. and Neuenschwander, M. and Oder, A. and Radetzki, S. and Adelhoefer, S. and Ramos Delgado, P. and Aravina, M. and Millward, J.M. and Fillmer, A. and Paul, F. and Siffrin, V. and von Kries, J.P. and Niendorf, T. and Nazaré, M. and Waiczies, S.
ACS Sensors 6 (11): 3948–3956. 26 November 2021

YAP and β-catenin cooperate to drive oncogenesis in basal breast cancer.
Quinn, H.M. and Vogel, R. and Popp, O. and Mertins, P. and Lan, L. and Messerschmidt, C. and Landshammer, A. and Lisek, K. and Château-Joubert, S. and Marangoni, E. and Koren, E. and Fuchs, Y. and Birchmeier, W.
Cancer Research 81 (8): 2116-2127. April 2021

Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses.
Rajasekaran, S. and Siddiqui, J. and Rakijas, J. and Nicolay, B. and Lin, C. and Khan, E. and Patel, R. and Morris, R. and Wyler, E. and Boukhali, M. and Balasubramanyam, J. and Ranjith Kumar, R. and Van Rechem, C. and Vogel, C. and Elchuri, S.V. and Landthaler, M. and Obermayer, B. and Haas, W. and Dyson, N. and Miles, W.
Communications Biology 4 (1): 977. 17 August 2021

PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα.
Ramberger, E. and Sapozhnikova, V. and Kowenz-Leutz, E. and Zimmermann, K. and Nicot, N. and Nazarov, P.V. and Perez-Hernandez, D. and Reimer, U. and Mertins, P. and Dittmar, G. and Leutz, A.
iScience 24 (6): 102686. 25 June 2021

A universal peptide matrix interactomics approach to disclose motif dependent protein binding.
Ramberger, E. and Suarez-Artiles, L. and Perez-Hernandez, D. and Haji, M. and Popp, O. and Reimer, U. and Leutz, A. and Dittmar, G. and Mertins, P.
Molecular & Cellular Proteomics 20 : 100135. 13 August 2021

Subsegmentation of the kidney in experimental MR images using morphology-based regions-of-interest or multiple-layer concentric objects.
Riazy, L. and Milani, B. and Periquito, J.S. and Cantow, K. and Niendorf, T. and Pruijm, M. and Seeliger, E. and Pohlmann, A.
Methods in Molecular Biology 2216 : 549-564. 2021

Patient-derived xenograft (PDX) models of colorectal carcinoma (CRC) as a platform for chemosensitivity and biomarker analysis in personalized medicine.
Rivera, M. and Fichtner, I. and Wulf-Goldenberg, A. and Sers, C. and Merk, J. and Patone, G. and Alp, K.M. and Kanashova, T. and Mertins, P. and Hoffmann, J. and Stein, U. and Walther, W.
Neoplasia 23 (1): 21-35. January 2021

Chromothripsis followed by circular recombination drives oncogene amplification in human cancer.
Rosswog, C. and Bartenhagen, C. and Welte, A. and Kahlert, Y. and Hemstedt, N. and Lorenz, W. and Cartolano, M. and Ackermann, S. and Perner, S. and Vogel, W. and Altmüller, J. and Nürnberg, P. and Hertwig, F. and Göhring, G. and Lilienweiss, E. and Stütz, A.M. and Korbel, J.O. and Thomas, R.K. and Peifer, M. and Fischer, M.
Nature Genetics 53 (12): 1673–1685. December 2021

RNA dynamics in Alzheimer’s disease.
Rybak-Wolf, A. and Plass, M.
Molecules 26 (17): 5113. 1 September 2021

Neurodegeneration in human brain organoids infected with herpes simplex virus type 1.
Rybak-Wolf, A. and Wyler, E. and Legnini, I. and Loewa, A. and Glažar, P. and Kim, S.J. and Pentimalli, T.M. and Oliveras Martinez, A. and Beyersdorf, B. and Woehler, A. and Landthaler, M. and Rajewsky, N.
bioRxiv : 2021.03.05.434122. 7 March 2021

Clonal dynamics of BRAF-driven drug resistance in EGFR-mutant lung cancer.
Schaufler, D. and Ast, D.F. and Tumbrink, H.L. and Abedpour, N. and Maas, L. and Schwäbe, A.E. and Spille, I. and Lennartz, S. and Fassunke, J. and Aldea, M. and Besse, B. and Planchard, D. and Nogova, L. and Michels, S. and Kobe, C. and Persigehl, T. and Westphal, T. and Koleczko, S. and Fischer, R. and Weber, J.P. and Altmüller, J. and Thomas, R.K. and Merkelbach-Bruse, S. and Gautschi, O. and Mezquita, L. and Büttner, R. and Wolf, J. and Peifer, M. and Brägelmann, J. and Scheffler, M. and Sos, M.L.
npj Precision Oncology 5 (1): 102. 17 December 2021

Small, seeding-competent huntingtin fibrils are prominent aggregate species in brains of zQ175 Huntington's disease knock-in mice.
Schindler, F. and Praedel, N. and Neuendorf, N. and Kunz, S. and Schnoegl, S. and Mason, M.A. and Taxy, B.A. and Bates, G.P. and Khoshnan, A. and Priller, J. and Grimm, J. and Maier, M. and Boeddrich, A. and Wanker, E.E.
Frontiers in Neuroscience 15 : 682172. 22 June 2021

Dataset for: Modeling chemotherapy induced neurotoxicity with human induced pluripotent stem cell (iPSC)-derived sensory neurons.
Schinke, C. and Fernandez Vallone, V. and Ivanov, A. and Peng, Y. and Körtvelyessy, P. and Nolte, L. and Huehnchen, P. and Beule, D. and Stachelscheid, H. and Boehmerle, W. and Endres, M.
Elsevier. October 2021

Modeling chemotherapy induced neurotoxicity with human induced pluripotent stem cell (iPSC)-derived sensory neurons.
Schinke, C. and Vallone, V.F. and Ivanov, A. and Peng, Y. and Körtvelyessy, P. and Nolte, L. and Huehnchen, P. and Beule, D. and Stachelscheid, H. and Boehmerle, W. and Endres, M.
Neurobiology of Disease 155 : 105391. July 2021

Exon junction complex-associated multi-adapter RNPS1 nucleates splicing regulatory complexes to maintain transcriptome surveillance.
Schlautmann, L.P. and Boehm, V. and Lackmann, J.W. and Altmüller, J. and Dieterich, C. and Gehring, N.H.
bioRxiv : 2021.08.20.457088. 20 August 2021

mTOR-activating mutations in RRAGD are causative for kidney tubulopathy and cardiomyopathy.
Schlingmann, K.P. and Jouret, F. and Shen, K. and Nigam, A. and Arjona, F. and Dafinger, C. and Houillier, P. and Jones, D. and Kleinerüschkamp, F. and Oh, J. and Godefroid, N. and Eltan, M. and Güran, T. and Burtey, S. and Parotte, M.C. and König, J. and Braun, A. and Bos, C. and Serra, M.I. and Rehmann, H. and Zwartkruis, F. and Renkema, K. and Klingel, K. and Schulze-Bahr, E. and Schermer, B. and Bergmann, C. and Altmüller, J. and Thiele, H. and Beck, B. and Dahan, K. and Sabatini, D. and Liebau, M. and Vargas-Poussou, R. and Knoers, N. and Konrad, M. and de Baaij, J.
Journal of the American Society of Nephrology 32 (11): 2885-2899. November 2021

Biallelic variants in YRDC cause a developmental disorder with progeroid features.
Schmidt, J. and Goergens, J. and Pochechueva, T. and Kotter, A. and Schwenzer, N. and Sitte, M. and Werner, G. and Altmueller, J. and Thiele, H. and Nürnberg, P. and Isensee, J. and Li, Y. and Müller, C. and Leube, B. and Reinhardt, H.C. and Hucho, T. and Salinas, G. and Helm, M. and Jachimowicz, R.D. and Wieczorek, D. and Kohl, T. and Lehnart, S.E. and Yigit, G. and Wollnik, B.
Human Genetics 140 (12): 1679-1693. December 2021

The neuroinflammatory interleukin-12 signaling pathway drives Alzheimer's disease-like pathology by perturbing oligodendrocyte survival and neuronal homeostasis.
Schneeberger, S. and Kim, S.J. and Eede, P. and Boltengagen, A. and Braeuning, C. and Andreadou, M. and Becher, B. and Karaiskos, N. and Kocks, C. and Rajewsky, N. and Heppner, F.L.
bioRxiv : 2021.04.25.441313. 27 April 2021

Heterozygous truncating variants in SUFU cause congenital ocular motor apraxia.
Schröder, S. and Li, Y. and Yigit, G. and Altmüller, J. and Bader, I. and Bevot, A. and Biskup, S. and Dreha-Kulaczewski, S. and Korenke, C.G. and Kottke, R. and Mayr, J.A. and Preisel, M. and Toelle, S.P. and Wente-Schulz, S. and Wortmann, S.B. and Hahn, H. and Boltshauser, E. and Uhmann, A. and Wollnik, B. and Brockmann, K.
Genetics in Medicine 23 (2): 341-351. February 2021

Diabetic pregnancy as a novel risk factor for cardiac dysfunction in the offspring-the heart as a target for fetal programming in rats.
Schütte, T. and Kedziora, S.M. and Haase, N. and Herse, F. and Alenina, N. and Müller, D.N. and Bader, M. and Schupp, M. and Dechend, R. and Golic, M. and Kräker, K.
Diabetologia 64 (12): 2829-2842. December 2021

Pathogenic variants associated with dilated cardiomyopathy predict outcome in pediatric myocarditis.
Seidel, F. and Holtgrewe, M. and Al-Wakeel-Marquard, N. and Opgen-Rhein, B. and Dartsch, J. and Herbst, C. and Beule, D. and Pickardt, T. and Klingel, K. and Messroghli, D. and Berger, F. and Schubert, S. and Kühnisch, J. and Klaassen, S.
Circulation Genomic and Precision Medicine 14 (4): e003250. 4 August 2021

Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge.
Sieberts, S.K. and Schaff, J. and Duda, M. and Pataki, B.Á. and Sun, M. and Snyder, P. and Daneault, J.F. and Parisi, F. and Costante, G. and Rubin, U. and Banda, P. and Chae, Y. and Chaibub Neto, E. and Dorsey, E.R. and Aydın, Z. and Chen, A. and Elo, L.L. and Espino, C. and Glaab, E. and Goan, E. and Golabchi, F.N. and Görmez, Y. and Jaakkola, M.K. and Jonnagaddala, J. and Klén, R. and Li, D. and McDaniel, C. and Perrin, D. and Perumal, T.M. and Rad, N.M. and Rainaldi, E. and Sapienza, S. and Schwab, P. and Shokhirev, N. and Venäläinen, M.S. and Vergara-Diaz, G. and Zhang, Y. and Wang, Y. and Guan, Y. and Brunner, D. and Bonato, P. and Mangravite, L.M. and Omberg, L.
NPJ Digital Medicine 4 (1): 53. 19 March 2021

New insights on Phyllanthus reticulatus Poir. leaves and stem bark extracts: UPLC-ESI-TOF-MS profiles, and biopharmaceutical and in silico analysis.
Sinan, K.I. and de la Luz Cádiz-Gurrea, M. and Javier Leyva-Jiménez, F. and Fernández-Ochoa, Á. and Segura-Carretero, A. and Glamocilja, J. and Sokovic, M. and Nenadić, M. and Aktumsek, A. and Dall'Acqua, S. and Zengin, G.
New Journal of Chemistry 45 (45): 21049-21065. 7 December 2021

Depletion of cardiac cardiolipin synthase alters systolic and diastolic function.
Smeir, E. and Leberer, S. and Blumrich, A. and Vogler, G. and Vasiliades, A. and Dresen, S. and Jaeger, C. and Gloaguen, Y. and Klose, C. and Beule, D. and Schulze, P.C. and Bodmer, R. and Foryst-Ludwig, A. and Kintscher, U.
iScience 24 (11): 103314. 19 November 2021

In-depth cell-free DNA sequencing reveals genomic landscape of Hodgkin’s lymphoma and facilitates ultrasensitive residual disease detection.
Sobesky, S. and Mammadova, L. and Cirillo, M. and Drees, E.E.E. and Mattlener, J. and Dörr, H. and Altmüller, J. and Shi, Z. and Bröckelmann, P.J. and Weiss, J. and Kreissl, S. and Sasse, S. and Ullrich, R.T. and Reinke, S. and Klapper, W. and Gerhard-Hartmann, E. and Rosenwald, A. and Roemer, M.G.M. and Nürnberg, P. and Hagenbeek, A. and Zijlstra, J.M. and Pegtel, D.M. and Engert, A. and Borchmann, P. and von Tresckow, B. and Borchmann, S.
Med 2 (10): 1171-1193. 8 October 2021

HMGB1 coordinates SASP-related chromatin folding and RNA homeostasis on the path to senescence.
Sofiadis, K. and Josipovic, N. and Nikolic, M. and Kargapolova, Y. and Übelmesser, N. and Varamogianni-Mamatsi, V. and Zirkel, A. and Papadionysiou, I. and Loughran, G. and Keane, J. and Michel, A. and Gusmao, E.G. and Becker, C. and Altmüller, J. and Georgomanolis, T. and Mizi, A. and Papantonis, A.
Molecular Systems Biology 17 (6): e9760. 1 June 2021

Ultrahigh field MRI determination of water diffusion rates in ex vivo human lenses of different age.
Stahnke, T. and Lindner, T. and Guthoff, R. and Stachs, O. and Wree, A. and Langner, S. and Niendorf, T. and Grabow, N. and Glass, Ä. and Beller, E. and Polei, S.
Quantitative Imaging in Medicine and Surgery 11 (7): 3029-3041. July 2021

Data preparation protocol for low signal-to-noise ratio fluorine-19 MRI.
Starke, L. and Niendorf, T. and Waiczies, S.
Methods in Molecular Biology 2216 : 711-722. 2021

Denoising for improved parametric MRI of the kidney: protocol for nonlocal means filtering.
Starke, L. and Tabelow, K. and Niendorf, T. and Pohlmann, A.
Methods in Molecular Biology 2216 : 565-576. 2021

Single-nuclei RNA-sequencing of plant tissues using a nanowell-based system.
Sunaga-Franze, D. and Muino, J.M. and Braeuning, C. and Xu, X. and Zong, M. and Smaczniak, C. and Yan, W. and Fischer, C. and Vidal, R. and Kliem, M. and Kaufmann, K. and Sauer, S.
Plant Journal 108 (3): 859-869. 5 November 2021

CALINCA - a novel pipeline for the identification of lncRNAs in podocyte disease.
Talyan, S. and Filipów, S. and Ignarski, M. and Smieszek, M. and Chen, H. and Kühne, L. and Butt, L. and Göbel, H. and Hoyer-Allo, K.J.R. and Koehler, F.C. and Altmüller, J. and Brinkkötter, P. and Schermer, B. and Benzing, T. and Kann, M. and Müller, R.U. and Dieterich, C.
Cells 10 (3): 692. March 2021

Long-lived macrophage reprogramming drives spike protein-mediated inflammasome activation in COVID-19.
Theobald, S.J. and Simonis, A. and Georgomanolis, T. and Kreer, C. and Zehner, M. and Eisfeld, H.S. and Albert, M.C. and Chhen, J. and Motameny, S. and Erger, F. and Fischer, J. and Malin, J.J. and Gräb, J. and Winter, S. and Pouikli, A. and David, F. and Böll, B. and Koehler, P. and Vanshylla, K. and Gruell, H. and Suárez, I. and Hallek, M. and Fätkenheuer, G. and Jung, N. and Cornely, O.A. and Lehmann, C. and Tessarz, P. and Altmüller, J. and Nürnberg, P. and Kashkar, H. and Klein, F. and Koch, M. and Rybniker, J.
EMBO Molecular Medicine 13 (8): e14150. 9 August 2021

Mitogen-activated protein kinase activity drives cell trajectories in colorectal cancer.
Uhlitz, F. and Bischoff, P. and Peidli, S. and Sieber, A. and Trinks, A. and Lüthen, M. and Obermayer, B. and Blanc, E. and Ruchiy, Y. and Sell, T. and Mamlouk, S. and Arsie, R. and Wei, T.T. and Klotz-Noack, K. and Schwarz, R.F. and Sawitzki, B. and Kamphues, C. and Beule, D. and Landthaler, M. and Sers, C. and Horst, D. and Blüthgen, N. and Morkel, M.
EMBO Molecular Medicine 13 (10): e14123. 7 October 2021

Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror.
Vladimirov, N. and Preusser, F. and Wisniewski, J. and Yaniv, Z. and Desai, R.A. and Woehler, A. and Preibisch, S.
Biomedical Optics Express 12 (4): 2186-2203. 1 April 2021

The traveling heads 2.0: multicenter reproducibility of quantitative imaging methods at 7 Tesla.
Voelker, M.N. and Kraff, O. and Goerke, S. and Laun, F.B. and Hanspach, J. and Pine, K.J. and Ehses, P. and Zaiss, M. and Liebert, A. and Straub, S. and Eckstein, K. and Robinson, S. and Nagel, A.N. and Stefanescu, M.R. and Wollrab, A. and Klix, S. and Felder, J. and Hock, M. and Bosch, D. and Weiskopf, N. and Speck, O. and Ladd, M.E. and Quick, H.H.
NeuroImage 232 : 117910. 15 May 2021

Biallelic mutations in L-dopachrome tautomerase (DCT) cause infantile nystagmus and oculocutaneous albinism.
Volk, A.E. and Hedergott, A. and Preising, M. and Rading, S. and Fricke, J. and Herkenrath, P. and Nürnberg, P. and Altmüller, J. and von Ameln, S. and Lorenz, B. and Neugebauer, A. and Karsak, M. and Kubisch, C.
Human Genetics 140 (8): 1157-1168. August 2021

Contribution of preclinical MRI to responsible animal research: living up to the 3R principle.
Wachsmuth, L. and Mensen, A. and Barca, C. and Wiart, M. and Tristão-Pereira, C. and Busato, A. and Waiczies, S. and Himmelreich, U. and Millward, J.M. and Reimann, H.M. and Jelescu, I. and Marzola, P. and Pradier, B. and Viola, A. and Faber, C.
Magnetic Resonance Materials in Physics Biology and Medicine 34 (4): 469-474. August 2021

Magnetic resonance imaging of multiple sclerosis at 7.0 Tesla.
Waiczies, S. and Els, A. and Kuchling, J. and Markenroth Bloch, K. and Pankowska, A. and Waiczies, H. and Herrmann, C. and Chien, C. and Finke, C. and Paul, F. and Niendorf, T.
Journal of Visualized Experiments (168): e62142. 19 February 2021

Functional imaging using fluorine ((19)F) MR methods: basic concepts.
Waiczies, S. and Prinz, C. and Starke, L. and Millward, J.M. and Delgado, P.R. and Rosenberg, J. and Nazaré, M. and Waiczies, H. and Pohlmann, A. and Niendorf, T.
Methods in Molecular Biology 2216 : 279-299. 2021

Characterization of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection clusters based on integrated genomic surveillance, outbreak analysis and contact tracing in an urban setting.
Walker, A. and Houwaart, T. and Finzer, P. and Ehlkes, L. and Tyshaieva, A. and Damagnez, M. and Strelow, D. and Duplessis, A. and Nicolai, J. and Wienemann, T. and Tamayo, T. and Kohns Vasconcelos, M. and Hülse, L. and Hoffmann, K. and Lübke, N. and Hauka, S. and Andree, M. and Däumer, M.P. and Thielen, A. and Kolbe-Busch, S. and Göbels, K. and Zotz, R. and Pfeffer, K. and Timm, J. and Dilthey, A.T.
Clinical Infectious Diseases 74 (6): 1039-1046. 15 March 2021

UPF3A and UPF3B are redundant and modular activators of nonsense-mediated mRNA decay in human cells.
Wallmeroth, D. and Boehm, V. and Lackmann, J.W. and Altmüller, J. and Dieterich, C. and Gehring, N.H.
bioRxiv : 2021.07.07.451444. 13 July 2021

Herpesviral induction of germline transcription factor DUX4 is critical for viral gene expression.
Walter, S. and Franke, V. and Drayman, N. and Wyler, E. and Tay, S. and Landthaler, M. and Akalin, A. and Ensser, A. and Full, F.
bioRxiv : 2021.03.24.436599. 24 March 2021

Single cell transcriptome sequencing on the Nanopore platform with ScNapBar.
Wang, Q. and Boenigk, S. and Boehm, V. and Gehring, N.H. and Altmueller, J. and Dieterich, C.
RNA 27 (7): 763-770. July 2021

A homozygous AKNA frameshift variant is associated with microcephaly in a Pakistani family.
Waseem, S.S. and Moawia, A. and Budde, B. and Tariq, M. and Khan, A. and Ali, Z. and Khan, S. and Iqbal, M. and Malik, N.A. and Haque, S.U. and Altmüller, J. and Thiele, H. and Hussain, M.S. and Cirak, S. and Baig, S.M. and Nürnberg, P.
Genes 12 (10): 1494. October 2021

Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex.
Weigt, M. and Gao, Q. and Ban, H. and He, H. and Mastrobuoni, G. and Kempa, S. and Chen, W. and Li, F.
Epigenetics & Chromatin 14 (1): 8. 19 January 2021

Increased risk of severe clinical course of COVID-19 in carriers of HLA-C*04:01.
Weiner, J. and Suwalski, P. and Holtgrewe, M. and Rakitko, A. and Thibeault, C. and Müller, M. and Patriki, D. and Quedenau, C. and Krüger, U. and Ilinsky, V. and Popov, I. and Balnis, J. and Jaitovich, A. and Helbig, E.T. and Lippert, L.J. and Stubbemann, P. and Real, L.M. and Macías, J. and Pineda, J.A. and Fernandez-Fuertes, M. and Wang, X. and Karadeniz, Z. and Saccomanno, J. and Doehn, J.M. and Hübner, R.H. and Hinzmann, B. and Salvo, M. and Blueher, A. and Siemann, S. and Jurisic, S. and Beer, J.H. and Rutishauser, J. and Wiggli, B. and Schmid, H. and Danninger, K. and Binder, R. and Corman, V.M. and Mühlemann, B. and Arjun Arkal, R. and Fragiadakis, G.K. and Mick, E. and Calfee, C.S. and Erle, D.J. and Hendrickson, C.M. and Kangelaris, K.N. and Krummel, M.F. and Woodruff, P.G. and Langelier, C.R. and Venkataramani, U. and García, F. and Zyla, J. and Drosten, C. and Braun, A. and Jones, T.C. and Suttorp, N. and Witzenrath, M. and Hippenstiel, S. and Zemojtel, T. and Skurk, C. and Wolfgang, P. and Borodina, T. and Ripke, S. and Sander, L.E. and Beule, D. and Landmesser, U. and Guettouche, T. and Kurth, F. and Heidecker, B.
EClinicalMedicine 40 : 101099. October 2021

De novo TRIM8 variants impair its protein localization to nuclear bodies and cause developmental delay, epilepsy, and focal segmental glomerulosclerosis.
Weng, P.L. and Majmundar, A.J. and Khan, K. and Lim, T.Y. and Shril, S. and Jin, G. and Musgrove, J. and Wang, M. and Ahram, D.F. and Aggarwal, V.S. and Bier, L.E. and Heinzen, E.L. and Onuchic-Whitford, A.C. and Mann, N. and Buerger, F. and Schneider, R. and Deutsch, K. and Kitzler, T.M. and Klämbt, V. and Kolb, A. and Mao, Y. and Moufawad El Achkar, C. and Mitrotti, A. and Martino, J. and Beck, B.B. and Altmüller, J. and Benz, M.R. and Yano, S. and Mikati, M.A. and Gunduz, T. and Cope, H. and Shashi, V. and Trachtman, H. and Bodria, M. and Caridi, G. and Pisani, I. and Fiaccadori, E. and AbuMaziad, A.S. and Martinez-Agosto, J.A. and Yadin, O. and Zuckerman, J. and Kim, A. and John-Kroegel, U. and Tyndall, A.V. and Parboosingh, J.S. and Innes, A.M. and Bierzynska, A. and Koziell, A.B. and Muorah, M. and Saleem, M.A. and Hoefele, J. and Riedhammer, K.M. and Gharavi, A.G. and Jobanputra, V. and Pierce-Hoffman, E. and Seaby, E.G. and O'Donnell-Luria, A. and Rehm, H.L. and Mane, S. and D'Agati, V.D. and Pollak, M.R. and Ghiggeri, G.M. and Lifton, R.P. and Goldstein, D.B. and Davis, E.E. and Hildebrandt, F. and Sanna-Cherchi, S.
American Journal of Human Genetics 108 (2): 357-367. 4 February 2021

The ARFRP1-dependent Golgi scaffolding protein GOPC is required for insulin secretion from pancreatic β-cells.
Wilhelmi, Ilka and Grunwald, S. and Gimber, N. and Popp, O. and Dittmar, G. and Arumughan, A. and Wanker, E.E. and Laeger, T. and Schmoranzer, J. and Daumke, O. and Schümann, A.
Molecular Metabolism 45 : 101151. March 2021

Quantitative lineage analysis identifies a hepato-pancreato-biliary progenitor niche.
Willnow, D. and Benary, U. and Margineanu, A. and Vignola, M.L. and Konrath, F. and Pongrac, I.M. and Karimaddini, Z. and Vigilante, A. and Wolf, J. and Spagnoli, F.M.
Nature 597 (7874): 87-91. 2 September 2021

Cell-type specialization in the brain is encoded by specific long-range chromatin topologies.
Winick-Ng, W. and Kukalev, A. and Harabula, I. and Zea Redondo, L. and Meijer, M. and Serebreni, L. and Bianco, S. and Szabo, D. and Chiariello, A.M. and Irastorza-Azcarate, I. and Fiorillo, L. and Musella, F. and Thieme, C. and Irani, E. and Torlai Triglia, E. and Kolodziejczyk, A.A. and Abentung, A. and Apostolova, G, and Paul, E.J. and Franke, V. and Kempfer, R. and Akalin, A. and Teichmann, S. and Dechant, G. and Ungless, M.A. and Nicodemi, M. and Castelo-Branco, G. and Pombo, A.
bioRxiv : 2020.04.02.020990. 12 May 2021

Cell-type specialization is encoded by specific chromatin topologies.
Winick-Ng, W. and Kukalev, A. and Harabula, I. and Zea-Redondo, L. and Szabó, D. and Meijer, M. and Serebreni, L. and Zhang, Y. and Bianco, S. and Chiariello, A.M. and Irastorza-Azcarate, I. and Thieme, C.J. and Sparks, T.M. and Carvalho, S. and Fiorillo, L. and Musella, F. and Irani, E. and Triglia, E.T. and Kolodziejczyk, A.A. and Abentung, A. and Apostolova, G. and Paul, E.J. and Franke, V. and Kempfer, R. and Akalin, A. and Teichmann, S.A. and Dechant, G. and Ungless, M.A. and Nicodemi, M. and Welch, L. and Castelo-Branco, G. and Pombo, A.
Nature 599 (7886): 684-691. 25 November 2021

Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy.
Wyler, E. and Mösbauer, K. and Franke, V. and Diag, A. and Gottula, L.T. and Arsiè, R. and Klironomos, F. and Koppstein, D. and Hönzke, K. and Ayoub, S. and Buccitelli, C. and Hoffmann, K. and Richter, A. and Legnini, I. and Ivanov, A. and Mari, T. and Del Giudice, S. and Papies, J. and Praktiknjo, S. and Meyer, T.F. and Müller, M.A. and Niemeyer, D. and Hocke, A. and Selbach, M. and Akalin, A. and Rajewsky, N. and Drosten, C. and Landthaler, M.
iScience 24 (3): 102151. 19 March 2021

Shared and oppositely regulated transcriptomic signatures in Huntington's disease and brain ischemia confirm known and unveil novel potential neuroprotective genes.
Yildirim, F. and Foddis, M. and Blumenau, S. and Müller, S. and Kajetan, B. and Holtgrewe, M. and Kola, V. and Beule, D. and Sassi, C.
Neurobiology of Aging 104 : 122.e1-122.e17. August 2021

Active perception during angiogenesis: filopodia speed up Notch selection of tip cells in silico and in vivo.
Zakirov, B. and Charalambous, G. and Thuret, R. and Aspalter, I.M. and Van-Vuuren, K. and Mead, T. and Harrington, K. and Regan, E.R. and Herbert, S.P. and Bentley, K.
Philosophical Transactions of the Royal Society of London Series B Biological Sciences 376 (1821): 20190753. 29 March 2021

RNA polymerase II is required for spatial chromatin reorganization following exit from mitosis.
Zhang, S. and Übelmesser, N. and Josipovic, N. and Forte, G. and Slotman, J.A. and Chiang, M. and Gothe, H.J. and Gusmao, E.G. and Becker, C. and Altmüller, J. and Houtsmuller, A.B. and Roukos, V. and Wendt, K.S. and Marenduzzo, D. and Papantonis, A.
Science Advances 7 (43): eabg8205. 22 October 2021

Physiological system analysis of the kidney by high-temporal-resolution T(2)* monitoring of an oxygenation step response.
Zhao, K. and Pohlmann, A. and Feng, Q. and Mei, Y. and Yang, G. and Yi, P. and Feng, Q. and Chen, W. and Zhou, L. and Wu, E.X. and Seeliger, E. and Niendorf, T. and Feng, Y.
Magnetic Resonance in Medicine 85 (1): 334-345. January 2021

2020

Computational genomics with R.
Akalin, A.
Chapman and Hall/CRC Computational Biology Series . CRC Press LLC, Milton. ISBN 9781498781855 2020

Acquired resistance to DZNep-mediated apoptosis is associated with copy number gains of AHCY in a B-cell lymphoma model.
Akpa, C.A. and Kleo, K. and Oker, E. and Tomaszewski, N. and Messerschmidt, C. and López, C. and Wagener, R. and Oehl-Huber, K. and Dettmer, K. and Schoeler, A. and Lenze, D. and Oefner, P.J. and Beule, D. and Siebert, R. and Capper, D. and Dimitrova, L. and Hummel, M.
BMC Cancer 20 (1): 427. 14 May 2020

DNA sonication inverse PCR for genome scale analysis of uncharacterized flanking sequences.
Alquezar‐Planas, D.E. and Löber, U. and Cui, P. and Quedenau, C. and Chen, W. and Greenwood, A.D.
Methods in Ecology and Evolution 22 September 2020

A palladium-catalyzed domino reaction to access 3-amino-2H-indazoles from hydrazines and 2-halobenzonitriles.
Alsalim, R. and Lindemann, P. and López-Alberca, M.P. and Miksche, S. and Czechtizky, W. and Halland, N. and Nazaré, M.
Organic Letters 22 (18): 7393-7396. 18 September 2020

PHF3 regulates neuronal gene expression through the new Pol II CTD reader domain SPOC.
Appel, L.M. and Franke, V. and Bruno, M. and Grishkovskaya, I. and Kasiliauskaite, A. and Schoeberl, U.E. and Puchinger, M.G. and Kostrhon, S. and Beltzung, E. and Mechtler, K. and Lin, G. and Vlasova, A. and Leeb, M. and Pavri, R. and Stark, A. and Akalin, A. and Stefl, R. and Bernecky, C. and Djinovic-Carugo, K. and Slade, D.
bioRxiv : 2020.02.11.943159. 12 February 2020

Fasting alters the gut microbiome with sustained blood pressure and body weight reduction in metabolic syndrome patients.
Balogh, A. and Bartolomaeus, H. and Löber, U. and Avery, E.G. and Steckhan, N. and Markó, L. and Wilck, N. and Hamad, I. and Šušnjar, U. and Mähler, A. and Hohmann, C. and Cramer, H. and Dobos, G. and Lesker, T.R. and Strowig, T. and Dechend, R. and Bzdok, D. and Kleinewietfeld, M. and Michalsen, A. and Müller, D.N. and Forslund, S.K.
medRxiv : 2020.02.23.20027029. 25 February 2020

Consensus-based technical recommendations for clinical translation of renal BOLD MRI.
Bane, O. and Mendichovszky, I.A. and Milani, B. and Dekkers, I.A. and Deux, J.F. and Eckerbom, P. and Grenier, N. and Hall, M. and Inoue, T. and Laustsen, C. and Lerman, L. and Liu, C. and Morrell, G. and Pedersen, M. and Pruijm, M. and Sadowski, E. and Seeliger, E. and Sharma, K. and Thoeny, H. and Vermathen, P. and Wang, Z. and Serafin, Z. and Zhang, J. and Francis, S. and Sourbron, S. and Pohlmann, A. and Fain, S. and Prasad, P.
Magnetic Resonance Materials in Physics Biology and Medicine 33 : 199-215. February 2020

Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells.
Barone, M. and Müller, M. and Chiha, S. and Ren, J. and Albat, D. and Soicke, A. and Dohmen, S. and Klein, M. and Bruns, J. and van Dinther, M. and Opitz, R. and Lindemann, P. and Beerbaum, M. and Motzny, K. and Roske, Y. and Schmieder, P. and Volkmer, R. and Nazaré, M. and Heinemann, U. and Oschkinat, H. and Ten Dijke, P. and Schmalz, H.G. and Kühne, R.
Proceedings of the National Academy of Sciences of the United States of America 117 (47): 29684-29690. 24 November 2020

Enhancement of CRISPR-Cas9 induced precise gene editing by targeting Histone H2A-K15 ubiquitination.
Bashir, S. and Dang, T. and Rossius, J. and Wolf, J. and Kuehn, R.
BMC Biotechnology 20 (1): 57. 23 October 2020

Analysing central metabolism in ultra-high resolution: at the crossroads of carbon and nitrogen.
Bayram, S. and Fürst, S. and Forbes, M. and Kempa, S.
Molecular Metabolism 33 : 38-47. 19 March 2020

Genetic information from discordant sibling pairs points to ESRP2 as a candidate trans-acting regulator of the CF modifier gene SCNN1B.
Becker, T. and Pich, A. and Tamm, S. and Hedtfeld, S. and Ibrahim, M. and Altmüller, J. and Dalibor, N. and Toliat, M.R. and Janciauskiene, S. and Tümmler, B. and Stanke, F.
Scientific Reports 10 (1): 22447. 31 December 2020

Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer.
Berndt, N. and Egners, A. and Mastrobuoni, G. and Vvedenskaya, O. and Fragoulis, A. and Dugourd, A. and Bulik, S. and Pietzke, M. and Bielow, C. and van Gassel, R. and Olde Damink, S.W. and Erdem, M. and Saez-Rodriguez, J. and Holzhütter, H.G. and Kempa, S. and Cramer, T.
British Journal of Cancer 122 (2): 233-244. 21 January 2020

Single-cell RNA sequencing reveals distinct tumor microenvironmental patterns in lung adenocarcinoma.
Bischoff, P. and Trinks, A. and Obermayer, B. and Pett, J.P. and Lehmann, A. and Jurmeister, P. and Elsner, A. and Dziodzio, T. and Rückert, J.C. and Neudecker, J. and Falk, C. and Beule, D. and Sers, C. and Morkel, M. and Horst, D. and Blüthgen, N. and Klauschen, F.
bioRxiv : 2020.12.11.419606. 11 December 2020

Investigating APOE, APP-Aβ metabolism genes and Alzheimer's disease GWAS hits in brain small vessel ischemic disease.
Blumenau, S. and Foddis, M. and Müller, S. and Holtgrewe, M. and Bentele, K. and Berchtold, D. and Beule, D. and Dirnagl, U. and Sassi, C.
Scientific Reports 10 (1): 7103. 28 April 2020

Heart-specific immune responses in an animal model of autoimmune-related myocarditis mitigated by an immunoproteasome inhibitor and genetic ablation.
Bockstahler, M. and Fischer, A. and Goetzke, C.C. and Neumaier, H.L. and Sauter, M. and Kespohl, M. and Müller, A.M. and Meckes, C. and Salbach, C. and Schenk, M. and Heuser, A. and Landmesser, U. and Weiner, J. and Meder, B. and Lehmann, L. and Kratzer, A. and Klingel, K. and Katus, H.A. and Kaya, Z. and Beling, A.
Circulation 141 (23): 1885-1902. 9 June 2020

Cardiorenal sodium MRI in small rodents using a quadrature birdcage volume resonator at 9.4 T.
Boehmert, L. and Waiczies, H. and Kuehne, A. and Oezerdem, C. and Waiczies, S. and Starke, L. and Ku, M.C. and Pohlmann, A. and Seeliger, E. and Niendorf, T.
Magnetic Resonance Materials in Physics Biology and Medicine 33 (1): 121-130. February 2020

An activatable lanthanide luminescent probe for time-gated detection of nitroreductase in live bacteria.
Brennecke, B. and Wang, Q. and Zhang, Q. and Hu, H.Y. and Nazaré, M.
Angewandte Chemie International Edition 59 (22): 8512-8516. 25 May 2020

Comprehensive molecular analysis of 61 Egyptian families with hereditary nonsyndromic hearing loss.
Budde, B.S. and Aly, M.A. and Mohamed, M.R. and Breß, A. and Altmüller, J. and Motameny, S. and Kawalia, A. and Thiele, H. and Konrad, K. and Becker, C. and Toliat, M.R. and Nürnberg, G. and Sayed, E.A.F. and Mohamed, E.S. and Pfister, M. and Nürnberg, P.
Clinical Genetics 98 (1): 32-42. July 2020

Human and mouse essentiality screens as a resource for disease gene discovery.
Cacheiro, P. and Muñoz-Fuentes, V. and Murray, S.A. and Dickinson, M.E. and Bucan, M. and Nutter, L.M.J. and Peterson, K.A. and Haselimashhadi, H. and Flenniken, A.M. and Morgan, H. and Westerberg, H. and Konopka, T. and Hsu, C.W. and Christiansen, A. and Lanza, D.G. and Beaudet, A.L. and Heaney, J.D. and Fuchs, H. and Gailus-Durner, V. and Sorg, T. and Prochazka, J. and Novosadova, V. and Lelliott, C.J. and Wardle-Jones, H. and Wells, S. and Teboul, L. and Cater, H. and Stewart, M. and Hough, T. and Wurst, W. and Sedlacek, R. and Adams, D.J. and Seavitt, J.R. and Tocchini-Valentini, G. and Mammano, F. and Braun, R.E. and McKerlie, C. and Herault, Y. and de Angelis, M.H. and Mallon, A.M. and Lloyd, K.C.K. and Brown, S.D.M. and Parkinson, H. and Meehan, T.F. and Smedley, D.
Nature Communications 11 (1): 655. 31 January 2020

Imagine physiology without imaging.
Cantow, K. and Hummel, L. and Flemming, B. and Waiczies, S. and Niendorf, T. and Seeliger, E.
Acta Physiologica 230 (3): e13549. November 2020

Mixing Aβ(1-40) and Aβ(1-42) peptides generates unique amyloid fibrils.
Cerofolini, L. and Ravera, E. and Bologna, S. and Wiglenda, T. and Böddrich, A. and Purfürst, B. and Benilova, I. and Korsak, M. and Gallo, G. and Rizzo, D. and Gonnelli, L. and Fragai, M. and De Strooper, B. and Wanker, E.E. and Luchinat, C.
Chemical Communications 56 (62): 8830-8833. 11 August 2020

Determination of primary microRNA processing in clinical samples by targeted pri-miR-sequencing.
Conrad, T. and Ntini, E. and Lang, B. and Cozzuto, L. and Andersen, J.B. and Marquardt, J.U. and Ponomarenko, J. and Tartaglia, G.G. and Vang Orom, U.A.
RNA 26 (11): 1726-1730. November 2020

Maximizing transcription of nucleic acids with efficient T7 promoters.
Conrad, T. and Plumbom, I. and Alcobendas, M. and Vidal, R. and Sauer, S.
Communications Biology 3 (1): 439. 14 August 2020

Localized inhibition of protein phosphatase 1 by NUAK1 promotes spliceosome activity and reveals a MYC-sensitive feedback control of transcription.
Cossa, G. and Roeschert, I. and Prinz, F. and Baluapuri, A. and Silveira Vidal, R. and Schülein-Völk, C. and Chang, Y.C. and Ade, C.P. and Mastrobuoni, G. and Girard, C. and Kumar, A. and Wortmann, L. and Walz, S. and Lührmann, R. and Kempa, S. and Kuster, B. and Wolf, E. and Mumberg, D. and Eilers, M.
Molecular Cell 77 (6): 1322-1339. 19 March 2020

Revalorization of bioactive compounds from tropical fruit by-products and industrial applications by means of sustainable approaches.
Cádiz-Gurrea, M.L. and Villegas-Aguilar, M.C. and Leyva-Jiménez, F.J. and Pimentel-Moral, S. and Fernández-Ochoa, Á. and Alañón, M.E. and Segura-Carretero, A.
Food Research International 138 (Part B): 109786. December 2020

The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization.
Daniel, B. and Czimmerer, Z. and Halasz, L. and Boto, P. and Kolostyak, Z. and Poliska, S. and Berger, W.K. and Tzerpos, P. and Nagy, G. and Horvath, A. and Hajas, G. and Cseh, T. and Nagy, A. and Sauer, S. and Francois-Deleuze, J. and Szatmari, I. and Bacsi, A. and Nagy, L.
Genes & Development 34 (21-22): 1474-1492. 1 November 2020

A homology independent sequence replacement strategy in human cells using a CRISPR nuclease.
Danner, E.W. and Lebedin, M. and de la Rosa, K. and Kühn, R.
bioRxiv : 2020.05.11.088252. 12 May 2020

Pdap1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification.
Delgado-Benito, V. and Berruezo-Llacuna, M. and Altwasser, R. and Winkler, W. and Balasubramanian, S. and Sundaravinayagam, D. and Graf, R. and Rahjouei, A. and Driesner, M. and Keller, L. and Janz, M. and Akalin, A. and Di Virgilio, M.
bioRxiv : 2020.01.30.917062. 31 January 2020

PDGFA-associated protein 1 protects mature B lymphocytes from stress-induced cell death and promotes antibody gene diversification.
Delgado-Benito, V. and Berruezo-Llacuna, M. and Altwasser, R. and Winkler, W. and Sundaravinayagam, D. and Balasubramanian, S. and Caganova, M. and Graf, R. and Rahjouei, A. and Henke, M.T. and Driesner, M. and Keller, L. and Prigione, A. and Janz, M. and Akalin, A. and Di Virgilio, M.
Journal of Experimental Medicine 217 (10): e20200137. 5 October 2020

Cyclin-dependent kinase 18 controls trafficking of aquaporin-2 and its abundance through ubiquitin ligase STUB1, which functions as an AKAP.
Dema, A. and Faust, D. and Lazarow, K. and Wippich, M. and Neuenschwander, M. and Zühlke, K. and Geelhaar, A. and Pallien, T. and Hallscheidt, E. and Eichhorst, J. and Wiesner, B. and Cernecká, H. and Popp, O. and Mertins, P. and Dittmar, G. and von Kries, J.P. and Klussmann, E.
Cells 9 (3): 673. 10 March 2020

RNA-sequencing and somatic mutation status of adrenocortical tumors: novel pathogenetic insights.
Di Dalmazi, G. and Altieri, B. and Scholz, C. and Sbiera, S. and Luconi, M. and Waldman, J. and Kastelan, D. and Ceccato, F. and Chiodini, I. and Arnaldi, G. and Riester, A. and Osswald, A. and Beuschlein, F. and Sauer, S. and Fassnacht, M. and Appenzeller, S. and Ronchi, C.L.
Journal of Clinical Endocrinology & Metabolism 105 (12): dgaa616. December 2020

A second cohort of CHD3 patients expands the molecular mechanisms known to cause Snijders Blok-Campeau syndrome.
Drivas, T.G. and Li, D. and Nair, D. and Alaimo, J.T. and Alders, M. and Altmüller, J. and Barakat, T.S. and Bebin, E.M. and Bertsch, N.L. and Blackburn, P.R. and Blesson, A. and Bouman, A.M. and Brockmann, K. and Brunelle, P. and Burmeister, M. and Cooper, G.M. and Denecke, J. and Dieux-Coëslier, A. and Dubbs, H. and Ferrer, A. and Gal, D. and Bartik, L.E. and Gunderson, L.B. and Hasadsri, L. and Jain, M. and Karimov, C. and Keena, B. and Klee, E.W. and Kloth, K. and Lace, B. and Macchiaiolo, M. and Marcadier, J.L. and Milunsky, J.M. and Napier, M.P. and Ortiz-Gonzalez, X.R. and Pichurin, P.N. and Pinner, J. and Powis, Z. and Prasad, C. and Radio, F.C. and Rasmussen, K.J. and Renaud, D.L. and Rush, E.T. and Saunders, C. and Selcen, D. and Seman, A.R. and Shinde, D.N. and Smith, E.D. and Smol, T. and Snijders Blok, L. and Stoler, J.M. and Tang, S. and Tartaglia, M. and Thompson, M.L. and van de Kamp, J.M. and Wang, J. and Weise, D. and Weiss, K. and Woitschach, R. and Wollnik, B. and Yan, H. and Zackai, E.H. and Zampino, G. and Campeau, P. and Bhoj, E.
European Journal of Human Genetics 28 (10): 1422-1431. October 2020

Propionic acid shapes the multiple sclerosis disease course by an immunomodulatory mechanism.
Duscha, A. and Gisevius, B. and Hirschberg, S. and Yissachar, N. and Stangl, G.I. and Eilers, E. and Bader, V. and Haase, S. and Kaisler, J. and David, C. and Schneider, R. and Troisi, R. and Zent, D. and Hegelmaier, T. and Dokalis, N. and Gerstein, S. and Del Mare-Roumani, S. and Amidror, S. and Staszewski, O. and Poschmann, G. and Stühler, K. and Hirche, F. and Balogh, A. and Kempa, S. and Träger, P. and Zaiss, M.M. and Holm, J.B. and Massa, M.G. and Nielsen, H.B. and Faissner, A. and Lukas, C. and Gatermann, S.G. and Scholz, M. and Przuntek, H. and Prinz, M. and Forslund, S.K. and Winklhofer, K.F. and Müller, D.N. and Linker, R.A. and Gold, R. and Haghikia, A.
Cell 180 (6): 1067-1080. 19 March 2020

Brain iron and metabolic abnormalities in C19orf12 mutation carriers: a 7.0 tesla MRI study in mitochondrial membrane protein-associated neurodegeneration.
Dusek, P. and Mekle, R. and Skowronska, M. and Acosta-Cabronero, J. and Huelnhagen, T. and Robinson, S.D. and Schubert, F. and Deschauer, M. and Els, A. and Ittermann, B. and Schottmann, G. and Madai, V.I. and Paul, F. and Klopstock, T. and Kmiec, T. and Niendorf, T. and Wuerfel, J. and Schneider, S.A.
Movement Disorders 35 (1): 142-150. January 2020

Wideband self-grounded bow-tie antenna for thermal MR.
Eigentler, T.W. and Winter, L. and Han, H. and Oberacker, E. and Kuehne, A. and Waiczies, H. and Schmitter, S. and Boehmert, L. and Prinz, C. and Trefna, H.D. and Niendorf, T.
NMR in Biomedicine 33 (5): e4274. May 2020

The VGF-derived peptide TLQP21 impairs purinergic control of chemotaxis and phagocytosis in mouse microglia.
Elmadany, N. and de Almeida Sassi, F. and Wendt, S. and Logiacco, F. and Visser, J. and Haage, V. and Perez Hernandez, D. and Mertins, P. and Hambardzumyan, D. and Wolf, S. and Kettenmann, H. and Semtner, M.
Journal of Neuroscience 40 (17): 3320-3331. 22 April 2020

Phosphodiesterase 3A and arterial hypertension.
Ercu, M. and Markó, L. and Schächterle, C. and Tsvetkov, D. and Cui, Y. and Maghsodi, S. and Bartolomaeus, T.U.P. and Maass, P.G. and Zühlke, K. and Gregersen, N. and Hübner, N. and Hodge, R. and Mühl, A. and Pohl, B. and Molé-Illas, R. and Geelhaar, A. and Walter, S. and Napieczynska, H. and Schelenz, S. and Taube, M. and Heuser, A. and Anistan, Y.M. and Qadri, F. and Todiras, M. and Plehm, R. and Popova, E. and Langanki, R. and Eichhorst, J. and Lehmann, M. and Wiesner, B. and Russwurm, M. and Forslund, S.K. and Kamer, I. and Müller, D.N. and Gollasch, M. and Aydin, A. and Bähring, S. and Bader, M. and Luft, F.C. and Klussmann, E.
Circulation 142 (2): 133-149. 14 July 2020

cfNOMe - a single assay for comprehensive epigenetic analyses of cell-free DNA.
Erger, F. and Nörling, D. and Borchert, D. and Leenen, E. and Habbig, S. and Wiesener, M.S. and Bartram, M.P. and Wenzel, A. and Becker, C. and Toliat, M.R. and Nürnberg, P. and Beck, B.B. and Altmüller, J.
Genome Medicine 12 (1): 54. 24 June 2020

Age attenuates the T-type Ca(V) 3.2-RyR axis in vascular smooth muscle.
Fan, G. and Kaßmann, M. and Cui, Y. and Matthaeus, C. and Kunz, S. and Zhong, C. and Zhu, S. and Xie, Yu and Tsvetkov, D. and Daumke, O. and Huang, Yu and Gollasch, M.
Aging Cell 19 (4): e13134. April 2020

Self-organizing 3D human trunk neuromuscular organoids.
Faustino Martins, J.M. and Fischer, C. and Urzi, A. and Vidal, R. and Kunz, S. and Ruffault, P.L. and Kabuss, L. and Hube, I. and Gazzerro, E. and Birchmeier, C. and Spuler, S. and Sauer, S. and Gouti, M.
Cell Stem Cell 26 (2): 172-186. 6 February 2020

Inhibiting WNT and NOTCH in renal cancer stem cells and the implications for human patients.
Fendler, A. and Bauer, D. and Busch, J. and Jung, K. and Wulf-Goldenberg, A. and Kunz, S. and Song, K. and Myszczyszyn, A. and Elezkurtaj, S. and Erguen, B. and Jung, S. and Chen, W. and Birchmeier, W.
Nature Communications 11 (1): 929. 17 February 2020

Induced pluripotent stem cell-based disease modeling identifies ligand-induced decay of megalin as a cause of Donnai-Barrow syndrome.
Flemming, J. and Marczenke, M. and Rudolph, I.M. and Nielsen, R. and Storm, T. and Ilsoe Christensen, E. and Diecke, S. and Emma, F. and Willnow, T.E.
Kidney International 98 (1): 159-167. July 2020

An exploratory investigation of brain collateral circulation plasticity after cerebral ischemia in two experimental C57BL/6 mouse models.
Foddis, M. and Winek, K. and Bentele, K. and Mueller, S. and Blumenau, S. and Reichhart N, N. and Crespo-Garcia, S. and Harnett, D. and Ivanov, A. and Meisel, A. and Joussen, A. and Strauss, O. and Beule, D. and Dirnagl, U. and Sassi, C.
Journal of Cerebral Blood Flow and Metabolism 40 (2): 276-287. 1 February 2020

Dissecting HSV-1-induced host shut-off at RNA level.
Friedel, C.C. and Whisnant, A.W. and Djakovic, L. and Rutkowski, A.J. and Friedl, M.S. and Kluge, M. and Williamson, J.C. and Sai, S. and Oliveira Vidal, R. and Sauer, S. and Hennig, T. and Prusty, B. and Lehner, P.J. and Matheson, N.J. and Erhard, F. and Dölken, L.
bioRxiv : 2020.05.20.106039. 20 May 2020

Progression-dependent altered metabolism in osteosarcoma resulting in different nutrient source dependencies.
Fritsche-Guenther, R. and Gloaguen, Y. and Kirchner, M. and Mertins, P. and Tunn, P.U. and Kirwan, J.A.
Cancers 12 (6): 1371. 27 May 2020

Parallel genetics of regulatory sequences in vivo.
Froehlich, J. and Uyar, B. and Herzog, M. and Theil, K. and Glažar, P. and Akalin, A. and Rajewsky, N.
bioRxiv : 2020.07.28.224998. 29 July 2020

Exploiting a PAX3-FOXO1-induced synthetic lethal ATR dependency for rhabdomyosarcoma therapy.
García, H.D. and Bei, Y. and von Stebut, J. and Ibáñez, G. and Imami, K. and Gürgen, D. and Rolff, J. and Helmsauer, K. and Timme, N. and Bardinet, V. and Chamorro González, R. and MacArthur, I.C. and Pusch, F.F. and Chen, C.Y. and Schulz, J. and Wengner, A.M. and Furth, C. and Lala, B. and Eggert, A. and Seifert, G. and Hundsoerfer, P. and Kirchner, M. and Mertins, P. and Selbach, M. and Lissat, A. and Schulte, J.H. and Haase, K. and Scheer, M. and Ortiz, M.V. and Henssen, A.G.
bioRxiv : 2020.12.04.411413. 2020

CASC3 promotes transcriptome-wide activation of nonsense-mediated decay by the exon junction complex.
Gerbracht, J.V. and Boehm, V. and Britto-Borges, T. and Kallabis, S. and Wiederstein, J.L. and Ciriello, S. and Aschemeier, D.U. and Krüger, M. and Frese, C.K. and Altmüller, J. and Dieterich, C. and Gehring, N.H.
Nucleic Acids Research 48 (15): 8626-8644. 4 September 2020

Prostaglandin E(2) in a TLR3- and 7/8-agonist-based DC maturation cocktail generates mature, cytokine-producing, migratory DCs but impairs antigen cross-presentation to CD8(+) T cells.
Gierlich, P. and Lex, V. and Technau, A. and Keupp, A. and Morper, L. and Glunz, A. and Sennholz, H. and Rachor, J. and Sauer, S. and Marcu, A. and Grigoleit, G.U. and Wölfl, M. and Schlegel, P.G. and Eyrich, M.
Cancer Immunology Immunotherapy 69 (6): 1029-1042. June 2020

Deep learning assisted peak curation for large scale LC-MS Metabolomics.
Gloaguen, Y. and Kirwan, J. and Beule, D.
bioRxiv : 2020.08.09.242727. 10 August 2020

Tissue-infiltrating macrophages mediate an exosome-based metabolic reprogramming upon DNA damage.
Goulielmaki, E. and Ioannidou, A. and Tsekrekou, M. and Stratigi, K. and Poutakidou, I.K. and Gkirtzimanaki, K. and Aivaliotis, M. and Evangelou, K. and Topalis, P. and Altmüller, J. and Gorgoulis, V.G. and Chatzinikolaou, G. and Garinis, G.A.
Nature Communications 11 (1): 42. 2 January 2020

The epigenetic regulator Mll1 is required for Wnt-driven intestinal tumorigenesis and cancer stemness.
Grinat, J. and Heuberger, J. and Vidal, R. and Goveas, N. and Kosel, F. and Berenguer-Llergo, A. and Kranz, A. and Wulf-Goldenberg, A. and Behrens, D. and Melcher, B. and Sauer, S. and Vieth, M. and Batlle, E. and Stewart, A. and Birchmeier, W.
Nature Communications 11 (1): 6422. 21 December 2020

Statin-induced myopathic changes in primary human muscle cells and reversal by a prostaglandin F2 alpha analogue.
Grunwald, S.A. and Popp, O. and Haafke, S. and Jedraszczak, N. and Grieben, U. and Saar, K. and Patone, G. and Kress, W. and Steinhagen-Thiessen, E. and Dittmar, G. and Spuler, S.
Scientific Reports 10 : 2158. 7 February 2020

CLIJ: GPU-accelerated image processing for everyone.
Haase, R. and Royer, L.A. and Steinbach, P. and Schmidt, D. and Dibrov, A. and Schmidt, U. and Weigert, M. and Maghelli, N. and Tomancak, P. and Jug, F. and Myers, E.W.
Nature Methods 17 (1): 5-6. January 2020

Long-term data on two sisters with C3GN due to an identical, homozygous CFH mutation and autoantibodies.
Hackl, A. and Erger, F. and Skerka, C. and Wenzel, A. and Tschernoster, N. and Ehren, R. and Burgmaier, K. and Riehmer, V. and Licht, C. and Kirschfink, M. and Weber, L.T. and Altmueller, J. and Zipfel, P.F. and Habbig, S.
Clinical Nephrology 94 (4): 197-206. October 2020

Design, implementation, evaluation and application of a 32-channel radio frequency signal generator for thermal magnetic resonance based anti-cancer treatment.
Han, H. and Eigentler, T.W. and Wang, S. and Kretov, E. and Winter, L. and Hoffmann, W. and Grass, E. and Niendorf, T.
Cancers 12 (7): 1720. 28 June 2020

Intronic CRISPR repair in a preclinical model of Noonan syndrome-associated cardiomyopathy.
Hanses, U. and Kleinsorge, M. and Roos, L. and Yigit, G. and Li, Y. and Barbarics, B. and El-Battrawy, I. and Lan, H. and Tiburcy, M. and Hindmarsh, R. and Lenz, C. and Salinas, G. and Diecke, S. and Müller, C. and Adham, I. and Altmüller, J. and Nürnberg, P. and Paul, T. and Zimmermann, W.H. and Hasenfuss, G. and Wollnik, B. and Cyganek, L.
Circulation 142 (11): 1059-1076. 15 September 2020

Viral cGAMP nuclease reveals the essential role of DNA sensing in protection against acute lethal virus infection.
Hernáez, B. and Alonso, G. and Georgana, I. and El-Jesr, M. and Martín, R. and Shair, K.H.Y. and Fischer, C. and Sauer, S. and Maluquer de Motes, C. and Alcamí, A.
Science Advances 6 (38): eabb4565. 18 September 2020

BRAVE-NET: fully automated arterial brain vessel segmentation in patients with cerebrovascular disease.
Hilbert, A. and Madai, V.I. and Akay, E.M. and Aydin, O.U. and Behland, J. and Sobesky, J. and Galinovic, I. and Khalil, A.A. and Taha, A.A. and Würfel, J. and Dusek, P. and Niendorf, T. and Fiebach, J.B. and Frey, D. and Livne, M.
medRxiv : 2020.04.08.20057570. 2020

BRAVE-NET: fully automated arterial brain vessel segmentation in patients with cerebrovascular disease.
Hilbert, A. and Madai, V.I. and Akay, E.M. and Aydin, O.U. and Behland, J. and Sobesky, J. and Galinovic, I. and Khalil, A.A. and Taha, A.A.A. and Wuerfel, J. and Dusek, P. and Niendorf, T. and Fiebach, J.B. and Frey, D. and Livne, M.
Frontiers in Artificial Intelligence 3 : 552258. 25 September 2020

Tracheal brush cells release acetylcholine in response to bitter tastants for paracrine and autocrine signaling.
Hollenhorst, M.I. and Jurastow, I. and Nandigama, R. and Appenzeller, S. and Li, L. and Vogel, J. and Wiederhold, S. and Althaus, M. and Empting, M. and Altmüller, J. and Hirsch, A.K.H. and Flockerzi, V. and Canning, B.J. and Saliba, A.E. and Krasteva-Christ, G.
FASEB Journal 34 (1): 316-332. January 2020

Digestiflow: from BCL to FASTQ with ease.
Holtgrewe, M. and Messerschmidt, C. and Nieminen, M. and Beule, D.
Bioinformatics 36 (6): 1983-1985. 15 March 2020

VarFish: comprehensive DNA variant analysis for diagnostics and research.
Holtgrewe, M. and Stolpe, O. and Nieminen, M. and Mundlos, S. and Knaus, A. and Kornak, U. and Seelow, D. and Segebrecht, L. and Spielmann, M. and Fischer-Zirnsak, B. and Boschann, F. and Scholl, U. and Ehmke, N. and Beule, D.
Nucleic Acids Research 48 (W1): W162-W169. 2 July 2020

VarFish - Collaborative and comprehensive variant analysis for diagnosis and research.
Holtgrewe, M. and Stolpe, O. and Nieminen, M. and Mundlos, S. and Knaus, A. and Kornak, U. and Seelow, D. and Segebrecht, L. and Spielmann, M. and Fischer-Zirnsak, B. and Boschann, F. and Scholl, U. and Ehmke, N. and Beule, D.
bioRxiv : 2020.01.27.921965. 31 January 2020

FAM46B is a prokaryotic-like cytoplasmic poly(A) polymerase essential in human embryonic stem cells.
Hu, J.L. and Liang, H. and Zhang, H. and Yang, M.Z. and Sun, W. and Zhang, P. and Luo, L. and Feng, J.X. and Bai, H. and Liu, F. and Zhang, T. and Yang, J.Y. and Gao, Q. and Long, Y. and Ma, X.Y. and Chen, Y. and Zhong, Q. and Yu, B. and Liao, S. and Wang, Y. and Zhao, Y. and Zeng, M.S. and Cao, N. and Wang, J. and Chen, W. and Yang, H.T. and Gao, S.
Nucleic Acids Research 48 (5): 2733-2748. 18 March 2020

Integrated proteomic and glycoproteomic characterization of human high-grade serous ovarian carcinoma.
Hu, Y. and Pan, J. and Shah, P. and Ao, M. and Thomas, S.N. and Liu, Y. and Chen, L. and Schnaubelt, M. and Clark, D.J. and Rodriguez, H. and Boja, E.S. and Hiltke, T. and Kinsinger, C.R. and Rodland, K.D. and Li, Q.K. and Qian, J. and Zhang, Z. and Chan, D.W. and Zhang, H.
Cell Reports 33 (3): 108276. 20 October 2020

Influence of wood species on toxicity of log-wood stove combustion aerosols: a parallel animal and air-liquid interface cell exposure study on spruce and pine smoke.
Ihantola, T. and Di Bucchianico, S. and Happo, M. and Ihalainen, M. and Uski, O. and Bauer, S. and Kuuspalo, K. and Sippula, O. and Tissari, J. and Oeder, S. and Hartikainen, A. and Rönkkö, T.J. and Martikainen, M.V. and Huttunen, K. and Vartiainen, P. and Suhonen, H. and Kortelainen, M. and Lamberg, H. and Leskinen, A. and Sklorz, M. and Michalke, B. and Dilger, M. and Weiss, C. and Dittmar, G. and Beckers, J. and Irmler, M. and Buters, J. and Candeias, J. and Czech, H. and Yli-Pirilä, P. and Abbaszade, G. and Jakobi, G. and Orasche, J. and Schnelle-Kreis, J. and Kanashova, T. and Karg, E. and Streibel, T. and Passig, J. and Hakkarainen, H. and Jokiniemi, J. and Zimmermann, R. and Hirvonen, M.R. and Jalava, P.I.
Particle and Fibre Toxicology 17 (1): 27. 15 June 2020

Controlled release of therapeutics from thermoresponsive nanogels: a thermal magnetic resonance feasibility study.
Ji, Y. and Winter, L. and Navarro, L. and Ku, M.C. and Periquito, J.S. and Pham, M. and Hoffmann, W. and Theune, L.E. and Calderón, M. and Niendorf, T.
Cancers 12 (6): 1380. 27 May 2020

MCH neurons regulate permeability of the median eminence barrier.
Jiang, H. and Gallet, S. and Klemm, P. and Scholl, P. and Folz-Donahue, K. and Altmüller, J. and Alber, J. and Heilinger, C. and Kukat, C. and Loyens, A. and Müller-Fielitz, H. and Sundaram, S. and Schwaninger, M. and Prevot, V. and Brüning, J.C.
Neuron 107 (2): 306-319. 22 July 2020

The integrated RNA landscape of renal preconditioning against ischemia-reperfusion injury.
Johnsen, M. and Kubacki, T. and Yeroslaviz, A. and Späth, M.R. and Mörsdorf, J. and Göbel, H. and Bohl, K. and Ignarski, M. and Meharg, C. and Habermann, B. and Altmüller, J. and Beyer, A. and Benzing, T. and Schermer, B. and Burst, V. and Müller, R.U.
Journal of the American Society of Nephrology 31 (4): 716-730. April 2020

Single cell RNA-sequencing-based analysis of CD4(+) T-cell subset-specific susceptibility to transcriptional modulation by HIV-1 latency-reversing agents.
Kazmierski, J. and Postmus, D. and Wyler, E. and Fischer, C. and Jansen, J. and Meixenberger, K. and Vitcetz, S.N. and Sohn, M. and Sauer, S. and Bannert, N. and Landthaler, M. and Goffinet, C.
bioRxiv : 2020.05.04.075119. 5 May 2020

CRISPLD1: a novel conserved target in the transition to human heart failure.
Khadjeh, S. and Hindmarsh, V. and Weber, F. and Cyganek, L. and Vidal, R.O. and Torkieh, S. and Streckfuss-Bömeke, K. and Lbik, D. and Tiburcy, M. and Mohamed, B.A. and Bonn, S. and Toischer, K. and Hasenfuss, G.
Basic Research in Cardiology 115 (3): 27. 7 March 2020

Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells.
Kim, M. and Franke, V. and Brandt, B. and Lowenstein, E.D. and Schöwel, V. and Spuler, S. and Akalin, A. and Birchmeier, C.
Nature Communications 11 : 6375. 11 December 2020

Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells.
Kim, M. and Franke, V. and Brandt, B. and Spuler, S. and Akalin, A. and Birchmeier, C.
bioRxiv : 2020.04.14.041665. 15 April 2020

The GEF Trio controls endothelial cell size and arterial remodeling downstream of Vegf signaling in both zebrafish and cell models.
Klems, A. and van Rijssel, J. and Ramms, A.S. and Wild, R. and Hammer, J. and Merkel, M. and Derenbach, L. and Préau, L. and Hinkel, R. and Suarez-Martinez, I. and Schulte-Merker, S. and Vidal, R. and Sauer, S. and Kivelä, R. and Alitalo, K. and Kupatt, C. and van Buul, J.D. and le Noble, F.
Nature Communications 11 (1): 5319. 21 October 2020

Characterization of circulating breast cancer cells with tumorigenic and metastatic capacity.
Koch, C. and Kuske, A. and Joosse, S.A. and Yigit, G. and Sflomos, G. and Thaler, S. and Smit, D.J. and Werner, S. and Borgmann, K. and Gärtner, S. and Mossahebi Mohammadi, P. and Battista, L. and Cayrefourcq, L. and Altmüller, J. and Salinas-Riester, G. and Raithatha, K. and Zibat, A. and Goy, Y. and Ott, L. and Bartkowiak, K. and Tan, T.Z. and Zhou, Q. and Speicher, M.R. and Müller, V. and Gorges, T.M. and Jücker, M. and Thiery, J.P. and Brisken, C. and Riethdorf, S. and Alix-Panabières, C. and Pantel, K.
EMBO Molecular Medicine 12 (9): e11908. 7 September 2020

Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma.
Koche, R.P. and Rodriguez-Fos, E. and Helmsauer, K. and Burkert, M. and MacArthur, I.C. and Maag, J. and Chamorro, R. and Munoz-Perez, N. and Puiggròs, M. and Dorado Garcia, H. and Bei, Y. and Röefzaad, C. and Bardinet, V. and Szymansky, A. and Winkler, A. and Thole, T. and Timme, N. and Kasack, K. and Fuchs, S. and Klironomos, F. and Thiessen, N. and Blanc, E. and Schmelz, K. and Künkele, A. and Hundsdörfer, P. and Rosswog, C. and Theissen, J. and Beule, D. and Deubzer, H. and Sauer, S. and Toedling, J. and Fischer, M. and Hertwig, F. and Schwarz, R.F. and Eggert, A. and Torrents, D. and Schulte, J.H. and Henssen, A.G.
Nature Genetics 52 (1): 29-34. January 2020

Regional expression profiles of risk genes for depression are associated with brain activation patterns in emotion and reward tasks.
Komorowski, A. and Vidal, R. and Singh, A. and Murgaš, M. and Pena-Centeno, T. and Gryglewski, G. and Kasper, S. and Wiltfang, J. and Lanzenberger, R. and Goya-Maldonado, R.
bioRxiv : 2020.06.27.175257. 27 June 2020

Deep learning for genomics using Janggu.
Kopp, W. and Monti, R. and Tamburrini, A. and Ohler, U. and Akalin, A.
Nature Communications 11 (1): 3488. 13 July 2020

The architecture of protein synthesis in the developing neocortex at near-atomic resolution reveals Ebp1-mediated neuronal proteostasis at the 60S tunnel exit.
Kraushar, M.L. and Krupp, F. and Turko, P. and Ambrozkiewicz, M.C. and Sprink, T. and Imami, K. and Vieira-Vieira, C.H. and Schaub, T. and Harnett, D. and Münster-Wandowski, A. and Bürger, J. and Zinnall, U. and Borisova, E. and Yamamoto, H. and Rasin, M.R. and Beule, D. and Landthaler, M. and Mielke, T. and Tarabykin, V. and Vida, I. and Selbach, M. and Spahn, C.M.T.
bioRxiv : 2020.02.08.939488. 10 February 2020

Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy.
Krug, K. and Jaehnig, E.J. and Satpathy, S. and Blumenberg, L. and Karpova, A. and Anurag, M. and Miles, G. and Mertins, P. and Geffen, Y. and Tang, L.C. and Heiman, D.I. and Cao, S. and Maruvka, Y.E. and Lei, J.T. and Huang, C. and Kothadia, R.B. and Colaprico, A. and Birger, C. and Wang, J. and Dou, Y. and Wen, B. and Shi, Z. and Liao, Y. and Wiznerowicz, M. and Wyczalkowski, M.A. and Chen, X.S. and Kennedy, J.J. and Paulovich, A.G. and Thiagarajan, M. and Kinsinger, C.R. and Hiltke, T. and Boja, E.S. and Mesri, M. and Robles, A.I. and Rodriguez, H. and Westbrook, T.F. and Ding, L. and Getz, G. and Clauser, K.R. and Fenyö, D. and Ruggles, K.V. and Zhang, B. and Mani, D.R and Carr, S.A. and Ellis, M.J. and Gillette, M.A.
Cell 183 (5): 1436-1456. 25 November 2020

Effects of empagliflozin and target-organ damage in a novel rodent model of heart failure induced by combined hypertension and diabetes.
Kräker, K. and Herse, F. and Golic, M. and Reichhart, N. and Crespo-Garcia, S. and Straß, O. and Grune, J. and Kintscher, U. and Ebrahim, M. and Bader, M. and Alenina, N. and Heuser, A. and Luft, F.C. and Müller, D.N. and Dechend, R. and Haase, N.
Scientific Reports 10 (1): 14061. 20 August 2020

Cell type-specific transcriptomics of esophageal adenocarcinoma as a scalable alternative for single cell transcriptomics.
Krämer, M. and Plum, P.S. and Velazquez Camacho, O. and Folz-Donahue, K. and Thelen, M. and Garcia-Marquez, I. and Wölwer, C. and Büsker, S. and Wittig, J. and Franitza, M. and Altmüller, J. and Löser, H. and Schlößer, H. and Büttner, R. and Schröder, W. and Bruns, C.J. and Alakus, H. and Quaas, A. and Chon, S.H. and Hillmer, A.M.
Molecular Oncology 14 (6): 1170-1184. June 2020

Solving the time- and frequency-multiplexed problem of constrained radiofrequency induced hyperthermia.
Kuehne, A. and Oberacker, E. and Waiczies, H. and Niendorf, T.
Cancers 12 (5): 1072. May 2020

TaxIt: an iterative computational pipeline for untargeted strain-level identification using MS/MS spectra from pathogenic single-organism samples.
Kuhring, M. and Doellinger, J. and Nitsche, A. and Muth, T. and Renard, B.Y.
Journal of Proteome Research 19 (6): 2501-2510. 5 June 2020

Concepts and software package for efficient quality control in targeted metabolomics studies - MeTaQuaC.
Kuhring, M. and Eisenberger, A. and Schmidt, V. and Kränkel, N. and Leistner, D.M. and Kirwan, J. and Beule, D.
Analytical Chemistry 92 (15): 10241-10245. 4 August 2020

Concepts and software package for efficient quality control in targeted metabolomics studies - MeTaQuaC.
Kuhring, M. and Eisenberger, A. and Schmidt, V. and Kränkel, N. and Leistner, D.M. and Kirwan, J. and Beule, D.
bioRxiv : 2020.01.10.901710. 11 January 2020

Support of a molecular tumour board by an evidence-based decision management system for precision oncology.
Lamping, M. and Benary, M. and Leyvraz, S. and Messerschmidt, C. and Blanc, E. and Kessler, T. and Schütte, M. and Lenze, D. and Jöhrens, K. and Burock, S. and Klinghammer, K. and Ochsenreither, S. and Sers, C. and Schäfer, R. and Tinhofer, I. and Beule, D. and Klauschen, F. and Yaspo, M.L. and Keilholz, U. and Rieke, D.T.
European Journal of Cancer 127 : 41-51. March 2020

Nerve damage induced skeletal muscle atrophy is associated with increased accumulation of intramuscular glucose and polyol pathway intermediates.
Langer, H.T. and Afzal, S. and Kempa, S. and Spuler, S.
Scientific Reports 10 : 1908. 5 February 2020

Hypochlorhydria reduces mortality in heart failure caused by Kcne2 gene deletion.
Lisewski, U. and Köhncke, C. and Schleussner, L. and Purfürst, B. and Lee, S.M. and De Silva, A. and Manville, R.W. and Abbott, G.W. and Roepke, T.K.
FASEB Journal 34 (8): 10699-10719. August 2020

Consensus-based technical recommendations for clinical translation of renal diffusion-weighted MRI.
Ljimani, A. and Caroli, A. and Laustsen, C. and Francis, S. and Mendichovszky, I.A. and Bane, O. and Nery, F. and Sharma, K. and Pohlmann, A. and Dekkers, I.A. and Vallee, J.P. and Derlin, K. and Notohamiprodjo, M. and Lim, R.P. and Palmucci, S. and Serai, S.D. and Periquito, J. and Wang, Z.J. and Froeling, M. and Thoeny, H.C. and Prasad, P. and Schneider, M. and Niendorf, T. and Pullens, P. and Sourbron, S. and Sigmund, E.E.
Magnetic Resonance Materials in Physics Biology and Medicine 33 (1): 177-195. February 2020

Mapping the unique and shared functions of oncogenic KRAS and RIT1 with proteome and transcriptome profiling.
Lo, A. and Holmes, K. and Mundt, F. and Moorthi, S. and Fung, I. and Fereshetian, S. and Watson, J. and Carr, S.A. and Mertins, P. and Berger, A.H.
bioRxiv : 2020.04.10.030460. 11 April 2020

Enzymatic dissociation induces transcriptional and proteotype bias in brain cell populations.
Mattei, D. and Ivanov, A. and van Oostrum, M. and Pantelyushin, S. and Richetto, J. and Mueller, F. and Beffinger, M. and Schellhammer, L. and Vom Berg, J. and Wollscheid, B. and Beule, D. and Paolicelli, R.C. and Meyer, U.
International Journal of Molecular Sciences 21 (21): 7944. 1 November 2020

Enzymatic dissociation induces transcriptional and proteotype bias in brain cell populations.
Mattei, D. and Ivanov, A. and van Oostrum, M. and Pantelyushin, S. and Richetto, J. and Mueller, F. and Beffinger, M. M. and Schellhammer, L. and vom Berg, J. and Wollscheid, B. and Beule, D. and Paolicelli, R.C. and Meyer, U.
bioRxiv : 2020.05.14.095422. 16 May 2020

EHD2-mediated restriction of caveolar dynamics regulates cellular fatty acid uptake.
Matthaeus, C. and Lahmann, I. and Kunz, S. and Jonas, W. and Melo, A.A. and Lehmann, M. and Larsson, E. and Lundmark, R. and Kern, M. and Blüher, M. and Olschowski, H. and Kompa, J. and Brügger, B. and Müller, D.N. and Haucke, V. and Schürmann, A. and Birchmeier, C. and Daumke, O.
Proceedings of the National Academy of Sciences of the United States of America 117 (13): 7471-7481. 31 March 2020

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos.
McGarvey, A.C. and Kopp, W. and Vučićević, D. and Kempfer, R. and Mattonet, K. and Hirsekorn, A. and Bilić, I. and Trinks, A. and Merks, A.M. and Panáková, D. and Pombo, A. and Akalin, A. and Junker, J.P. and Stainier, D.Y.R. and Garfield, D. and Ohler, U. and Lacadie, S.A.
bioRxiv : 2020.06.26.173377. 26 June 2020

Identification of novel disease relevant genetic modifiers affecting the SHH pathway in the developing brain.
Mecklenburg, N. and Kowalczyk, I. and Witte, F. and Görne, J. and Laier, A. and Gonschior, H. and Lehmann, M. and Richter, M. and Sporbert, A. and Purfürst, B. and Hübner, N. and Hammes, A.
bioRxiv : 2020.11.03.366302. 3 November 2020

Technical recommendations for clinical translation of renal MRI: a consensus project of the Cooperation in Science and Technology Action PARENCHIMA.
Mendichovszky, I. and Pullens, P. and Dekkers, I. and Nery, F. and Bane, O. and Pohlmann, A. and de Boer, A. and Ljimani, A. and Odudu, A. and Buchanan, C. and Sharma, K. and Laustsen, C. and Harteveld, A. and Golay, X. and Pedrosa, I. and Alsop, D. and Fain, S. and Caroli, A. and Prasad, P. and Francis, S. and Sigmund, E. and Fernández-Seara, M. and Sourbron, S.
Magnetic Resonance Materials in Physics Biology and Medicine 33 : 131-140. February 2020

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects.
Mereu, E. and Lafzi, A. and Moutinho, C. and Ziegenhain, C. and McCarthy, D.J. and Álvarez-Varela, A. and Batlle, E. and Sagar, and Grün, D. and Lau, J.K. and Boutet, S.C. and Sanada, C. and Ooi, A. and Jones, R.C. and Kaihara, K. and Brampton, C. and Talaga, Y. and Sasagawa, Y. and Tanaka, K. and Hayashi, T. and Braeuning, C. and Fischer, C. and Sauer, S. and Trefzer, T. and Conrad, C. and Adiconis, X. and Nguyen, L.T. and Regev, A. and Levin, J.Z. and Parekh, S. and Janjic, A. and Wange, L.E. and Bagnoli, J.W. and Enard, W. and Gut, M. and Sandberg, R. and Nikaido, I. and Gut, I. and Stegle, O. and Heyn, H.
Nature Biotechnology 38 (6): 747-755. June 2020

Distinct immune evasion in APOBEC-enriched, HPV-negative HNSCC.
Messerschmidt, C. and Obermayer, B. and Klinghammer, K. and Ochsenreither, S. and Treue, D. and Stenzinger, A. and Glimm, H. and Fröhling, S. and Kindler, T. and Brandts, C.H. and Schulze-Osthoff, K. and Weichert, W. and Tinhofer, I. and Klauschen, F. and Keilholz, U. and Beule, D. and Rieke, D.T.
International Journal of Cancer 147 (8): 2293-2302. 15 October 2020

Generation of three age and gender matched pairs of human induced pluripotent stem cells derived from myoblasts (MDCi011-A, MDCi012-A, MDCi013-A) and from peripheral blood mononuclear cells (MDCi011-B, MDCi012-B, MDCi013-B) from the same donor.
Metzler, E. and Telugu, N. and Diecke, S. and Spuler, S. and Escobar, H.
Stem Cell Research 48 : 101987. October 2020

Generation of two human induced Pluripotent Stem Cell lines derived from myoblasts (MDCi014-A) and from peripheral blood mononuclear cells (MDCi014-B) from the same donor.
Metzler, E. and Telugu, N. and Diecke, S. and Spuler, S. and Escobar, H.
Stem Cell Research 48 : 101998. October 2020

HIV-1 Gag release from yeast reveals ESCRT interaction with the Gag N-terminal protein region.
Meusser, B. and Purfuerst, B. and Luft, F.C.
Journal of Biological Chemistry 295 (52): 17950-17972. 25 December 2020

Diverse chemotypes drive biased signaling by cannabinoid receptors.
Miljuš, T. and Heydenreich, F.M. and Gazzi, T. and Kimbara, A. and Rogers-Evans, M. and Nettekoven, M. and Zirwes, E. and Osterwald, A. and Rufer, A.C. and Ullmer, C. and Guba, W. and Le Gouill, C. and Fingerle, J. and Nazaré, M. and Grether, U. and Bouvier, M. and Veprintsev, D.B.
bioRxiv : 2020.11.09.375162. 10 November 2020

Simple workflow and comparison of media for hPSC-cardiomyocyte cryopreservation and recovery.
Miller, D.C. and Genehr, C. and Telugu, N.S. and Kurths, S. and Diecke, S.
Current Protocols in Stem Cell Biology 55 (1): e125. December 2020

Transient enlargement of brain ventricles during relapsing-remitting multiple sclerosis and experimental autoimmune encephalomyelitis.
Millward, J.M. and Delgado, P.R. and Smorodchenko, A. and Boehmert, L. and Periquito, J. and Reimann, H.M. and Prinz, C. and Els, A. and Scheel, M. and Bellmann-Strobl, J. and Waiczies, H. and Wuerfel, J. and Infante-Duarte, C. and Chien, C. and Kuchling, J. and Pohlmann, A. and Zipp, F. and Paul, F. and Niendorf, T. and Waiczies, S.
JCI Insight 5 (21): e140040. 5 November 2020

Analysis of driver mutational hot spots in blood-derived cell-free DNA of patients with primary central nervous system lymphoma obtained before intracerebral biopsy.
Montesinos-Rongen, M. and Brunn, A. and Tuchscherer, A. and Borchmann, P. and Schorb, E. and Kasenda, B. and Altmüller, J. and Illerhaus, G. and Ruge, M.I. and Maarouf, M. and Büttner, R. and Hansmann, M.L. and Hallek, M. and Prinz, M. and Siebert, R. and Deckert, M.
Journal of Molecular Diagnostics 22 (10): 1300-1307. October 2020

From pyrazolones to azaindoles: evolution of active-site SHP2 inhibitors based on scaffold hopping and bioisosteric replacement.
Mostinski, Y. and Heynen, G.J.J.E. and López-Alberca, M.P. and Paul, J. and Miksche, S. and Radetzki, S. and Schaller, D. and Shanina, E. and Seyffarth, C. and Kolomeets, Y. and Ziebart, N. and de Schryver, J. and Oestreich, S. and Neuenschwander, M. and Roske, Y. and Heinemann, U. and Rademacher, C. and Volkamer, A. and von Kries, J.P. and Birchmeier, W. and Nazaré, M.
Journal of Medicinal Chemistry 63 (23): 14780-14804. 10 December 2020

Single-molecule analysis reveals agonist-specific dimer formation of µ-opioid receptors.
Möller, J. and Isbilir, A. and Sungkaworn, T. and Osberg, B. and Karathanasis, C. and Sunkara, V. and Grushevskyi, E.O. and Bock, A. and Annibale, P. and Heilemann, M. and Schütte, C. and Lohse, M.J.
Nature Chemical Biology 16 (9): 946-954. September 2020

A novel mutation in PIGA associated with multiple congenital anomalies-hypotonia-seizure syndrome 2 (MCAHS2) in a boy with a combination of severe epilepsy and gingival hyperplasia.
Neuhofer, C.M. and Funke, R. and Wilken, B. and Knaus, A. and Altmüller, J. and Nürnberg, P. and Li, Y. and Wollnik, B. and Burfeind, P. and Pauli, S.
Molecular Syndromology 11 (1): 30-37. February 2020

ONX 0914 lacks selectivity for the cardiac immunoproteasome in CoxsackievirusB3 myocarditis of NMRI mice and promotes virus-mediated tissue damage.
Neumaier, H.L. and Harel, S. and Klingel, K. and Kaya, Z. and Heuser, A. and Kespohl, M. and Beling, A.
Cells 9 (5): 1093. May 2020

SODAR Core: a Django-based framework for scientific data management and analysis web apps.
Nieminen, M. and Stolpe, O. and Schumann, F. and Holtgrewe, M. and Beule, D.
Journal of Open Source Software 5 (55): 1584. 15 November 2020

Google maps for tissues: multiscale imaging of biological systems and disease.
Niendorf, T. and Frydman, L. and Neeman, M. and Seeliger, E.
Acta Physiologica 228 (2): e13392. February 2020

Probing renal blood volume with magnetic resonance imaging.
Niendorf, T. and Seeliger, E. and Cantow, K. and Flemming, B. and Waiczies, S. and Pohlmann, A.
Acta Physiologica 228 (4): e13435. April 2020

Longitudinal omics in Syrian hamsters integrated with human data unravel complexity of moderate immune responses to SARS-CoV-2.
Nouailles, G. and Wyler, E. and Pennitz, P. and Postmus, D. and Vladimirova, D. and Kazmierski, J. and Pott, F. and Dietert, K. and Mülleder, M. and Farztdinov, V. and Obermayer, B. and Wienhold, S.M. and Andreotti, S. and Höfler, T. and Sawitzki, B. and Drosten, C. and Sander, L.E. and Suttorp, N. and Ralser, M. and Beule, D. and Gruber, A.D. and Goffinet, C. and Landthaler, M. and Trimpert, J. and Witzenrath, M.
bioRxiv : 2020.12.18.423524. 19 December 2020

Radiofrequency applicator concepts for thermal magnetic resonance of brain tumors at 297 MHz (7.0 Tesla).
Oberacker, E. and Kuehne, A. and Oezerdem, C. and Nadobny, J. and Weihrauch, M. and Beck, M. and Zschaeck, S. and Diesch, C. and Eigentler, T.W. and Waiczies, H. and Ghadjar, P. and Wust, P. and Winter, L. and Niendorf, T.
International Journal of Hyperthermia 37 (1): 549-563. 2 June 2020

Noncanonical effector functions of the T-memory-like T-PLL cell are shaped by cooperative TCL1A and TCR signaling.
Oberbeck, S. and Schrader, A. and Warner, K. and Jungherz, D. and Crispatzu, G. and von Jan, J. and Chmielewski, M. and Ianevski, A. and Diebner, H.H. and Mayer, P. and Kondo Ados, A. and Wahnschaffe, L. and Braun, T. and Müller, T.A. and Wagle, P. and Bouska, A. and Neumann, T. and Pützer, S. and Varghese, L. and Pflug, N. and Thelen, M. and Makalowski, J. and Riet, N. and Göx, H.J.M and Rappl, G. and Altmüller, J. and Kotrová, M. and Persigehl, T. and Hopfinger, G. and Hansmann, M.L. and Schlößer, H. and Stilgenbauer, S. and Dürig, J. and Mougiakakos, D. and von Bergwelt-Baildon, M. and Roeder, I. and Hartmann, S. and Hallek, M. and Moriggl, R. and Brüggemann, M. and Aittokallio, T. and Iqbal, J. and Newrzela, S. and Abken, H. and Herling, M.
Blood 136 (24): 2786-2802. 10 December 2020

SCelVis: exploratory single cell data analysis on the desktop and in the cloud.
Obermayer, B. and Holtgrewe, M. and Nieminen, M. and Messerschmidt, C. and Beule, D.
PeerJ 8 : e8607. 19 February 2020

Towards a more reliable identification of isomeric metabolites using pattern guided retention validation.
Opialla, T. and Kempa, S. and Pietzke, M.
Metabolites 10 (11): 457. 12 November 2020

A semi-automated intestinal organoid screening method demonstrates epigenetic control of epithelial maturation.
Ostrop, J. and Zwiggelaar, R. and Pedersen, M.T. and Gerbe, F. and Bösl, K. and Lindholm, H.T. and Díez-Sánchez, Al. and Parmar, N. and Radetzki, S. and von Kries, J.P. and Jay, P. and Jensen, K.B. and Arrowsmith, C. and Oudhoff, M.J.
bioRxiv : 2020.07.23.217414. 24 July 2020

Pairwise stimulations of pathogen-sensing pathways predict immune responses to multi-adjuvant combinations.
Pandey, S. and Gruenbaum, A. and Kanashova, T. and Mertins, P. and Cluzel, P. and Chevrier, N.
Cell Systems 11 (5): 495-508. 18 November 2020

Pairwise interactions in adjuvant combinations dictate immune responses and inform cancer immunotherapy design.
Pandey, S. and Gruenbaum, A. and Kanashova, T. and Mertins, P. and Cluzel, P. and Chevrier, N.
bioRxiv : 2020.07.11.198879. 12 July 2020

Reconstruction of rearranged T-cell receptor loci by whole genome and transcriptome sequencing gives insights into the initial steps of T-cell prolymphocytic leukemia.
Patil, P. and Cieslak, A. and Bernhart, S.H. and Toprak, U.H. and Wagener, R. and López, C. and Wiehle, L. and Bens, S. and Altmüller, J. and Franitza, M. and Scholz, I. and Jayne, S. and Ahearne, M.J. and Scheffold, A. and Jebaraj, B.M.C. and Schneider, C. and Costa, D. and Braun, T. and Schrader, A. and Campo, E. and Dyer, M.J.S. and Nürnberg, P. and Dürig, J. and Johansson, P. and Böttcher, S. and Schlesner, M. and Herling, M. and Stilgenbauer, S. and Macintyre, E. and Siebert, R.
Genes Chromosomes & Cancer 59 (4): 261-267. April 2020

Resolving fates and single-cell transcriptomes of hematopoietic stem cell clones by PolyloxExpress barcoding.
Pei, W. and Shang, F. and Wang, X. and Fanti, A.K. and Greco, A. and Busch, K. and Klapproth, K. and Zhang, Q. and Quedenau, C. and Sauer, S. and Feyerabend, T.B. and Höfer, T. and Rodewald, H.R.
Cell Stem Cell 27 (3): 383-395. 3 September 2020

Resolving fate and transcriptome of hematopoietic stem cell clones.
Pei, W. and Shang, F. and Wang, X. and Fanti, A.K. and Greco, A. and Busch, K. and Klapproth, K. and Zhang, Q. and Quedenau, C. and Sauer, S. and Feyerabend, T.B. and Höfer, T. and Rodewald, H.R.
bioRxiv : 2020.03.25.008433. 26 March 2020

Multiplexed quantification of four neuroblastoma DNA targets in a single droplet digital PCR reaction.
Peitz, C. and Sprüssel, A. and Linke, R.B. and Astrahantseff, K. and Grimaldi, M. and Schmelz, K. and Toedling, J. and Schulte, J.H. and Fischer, M. and Messerschmidt, C. and Beule, D. and Keilholz, U. and Eggert, A. and Deubzer, H.E. and Lodrini, M.
Journal of Molecular Diagnostics 22 (11): 1309-1323. November 2020

The genomic and clinical landscape of fetal akinesia.
Pergande, M. and Motameny, S. and Özdemir, Ö. and Kreutzer, M. and Wang, H. and Daimagüler, H.S. and Becker, K. and Karakaya, M. and Ehrhardt, H. and Elcioglu, N. and Ostojic, S. and Chao, C.M. and Kawalia, A. and Duman, Ö. and Koy, A. and Hahn, A. and Reimann, J. and Schoner, K. and Schänzer, A. and Westhoff, J.H. and Schwaibold, E.M.C. and Cossee, M. and Imbert-Bouteille, M. and von Pein, H. and Haliloglu, G. and Topaloglu, H. and Altmüller, J. and Nürnberg, P. and Thiele, H. and Heller, R. and Cirak, S.
Genetics in Medicine 22 (3): 511-523. March 2020

Effects of diets high in animal or plant protein on oxidative stress in individuals with type 2 diabetes: a randomized clinical trial.
Pivovarova-Ramich, O. and Markova, M. and Weber, D. and Sucher, S. and Hornemann, S. and Rudovich, N. and Raila, J. and Sunaga-Franze, D. and Sauer, S. and Rohn, S. and Pfeiffer, A.F.H. and Grune, T.
Redox Biology 29 (2): 101397. January 2020

Association of germline variant status with therapy response in high-risk early-stage breast cancer: a secondary analysis of the GeparOcto randomized clinical trial.
Pohl-Rescigno, E. and Hauke, J. and Loibl, S. and Möbus, V. and Denkert, C. and Fasching, P.A. and Kayali, M. and Ernst, C. and Weber-Lassalle, N. and Hanusch, C. and Tesch, H. and Müller, V. and Altmüller, J. and Thiele, H. and Untch, M. and Lübbe, K. and Nürnberg, P. and Rhiem, K. and Furlanetto, J. and Lederer, B. and Jackisch, C. and Nekljudova, V. and Schmutzler, R.K. and Schneeweiss, A. and Hahnen, E.
JAMA Oncology 6 (5): 744-748. May 2020

Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy.
Prahst, C. and Ashrafzadeh, P. and Mead, T. and Figueiredo, A. and Chang, K. and Richardson, D. and Venkaraman, L. and Richards, M. and Russo, A.M. and Harrington, K. and Ouarné, M. and Pena, A. and Chen, J.X. and Claesson-Welsh, L. and Cho, K.S. and Franco, C.A. and Bentley, K.
eLife 9 : e49779. 19 February 2020

Tracing tumorigenesis in a solid tumor model at single-cell resolution.
Praktiknjo, S.D. and Obermayer, B. and Zhu, Q. and Fang, L. and Liu, H. and Quinn, H. and Stoeckius, M. and Kocks, C. and Birchmeier, W. and Rajewsky, N.
Nature Communications 11 (1): 991. 20 February 2020

Splicing-accessible coding 3'UTRs control protein stability and interaction networks.
Preussner, M. and Gao, Q. and Morrison, E. and Herdt, O. and Finkernagel, F. and Schumann, M. and Krause, E. and Freund, C. and Chen, W. and Heyd, F.
Genome Biology 21 (1): 186. 29 July 2020

Paroxysmal tonic upgaze: a heterogeneous clinical condition responsive to carbonic anhydrase inhibition.
Quade, A. and Thiel, A. and Kurth, I. and Holtgrewe, M. and Elbracht, M. and Beule, D. and Eggermann, K. and Scholl, U.I. and Häusler, M.
European Journal of Paediatric Neurology 25 : 181-186. March 2020

YAP and β-catenin co-operate to drive oncogenesis in basal breast cancer.
Quinn, H. and Koren, E. and Vogel, R. and Popp, O. and Mertins, P. and Messerschmidt, C. and Marangoni, E. and Fuchs, Y. and Birchmeier, W.
bioRxiv : 2020.06.05.115881. 6 June 2020

A comprehensive motifs-based interactome of the C/EBPα transcription factor.
Ramberger, E. and Sapozhnikova, V. and Kowenz-Leutz, E. and Zimmermann, K. and Nicot, N. and Nazarov, P.V. and Perez-Hernandez, D. and Reimer, U. and Mertins, P. and Dittmar, G. and Leutz, A.
bioRxiv : 2020.12.28.424569. 28 December 2020

Functional annotation of human long noncoding RNAs via molecular phenotyping.
Ramilowski, J.A. and Yip, C.W. and Agrawal, S. and Chang, J.C. and Ciani, Y. and Kulakovskiy, I.V. and Mendez, M. and Ooi, J.L.C. and Ouyang, J.F. and Parkinson, N. and Petri, A. and Roos, L. and Severin, J. and Yasuzawa, K. and Abugessaisa, I. and Akalin, A. and Antonov, I.V. and Arner, E. and Bonetti, A. and Bono, H. and Borsari, B. and Brombacher, F. and Cameron, C.J.F. and Cannistraci, C.V. and Cardenas, R. and Cardon, M. and Chang, H. and Dostie, J. and Ducoli, L. and Favorov, A. and Fort, A. and Garrido, D. and Gil, N. and Gimenez, J. and Guler, R. and Handoko, L. and Harshbarger, J. and Hasegawa, A. and Hasegawa, Y. and Hashimoto, K. and Hayatsu, N. and Heutink, P. and Hirose, T. and Imada, E.L. and Itoh, M. and Kaczkowski, B. and Kanhere, A. and Kawabata, E. and Kawaji, H. and Kawashima, T. and Kelly, S.T. and Kojima, M. and Kondo, N. and Koseki, H. and Kouno, T. and Kratz, A. and Kurowska-Stolarska, M. and Kwon, A.T.J. and Leek, J. and Lennartsson, A. and Lizio, M. and López-Redondo, F. and Luginbühl, J. and Maeda, S. and Makeev, V.J. and Marchionni, L. and Medvedeva, Y.A. and Minoda, A. and Müller, F. and Muñoz-Aguirre, M. and Murata, M. and Nishiyori, H. and Nitta, K.R. and Noguchi, S. and Noro, Y. and Nurtdinov, R. and Okazaki, Y. and Orlando, V. and Paquette, D. and Parr, C.J.C. and Rackham, O.J.L. and Rizzu, P. and Sánchez Martinez, D.F. and Sandelin, A. and Sanjana, P. and Semple, C.A.M. and Shibayama, Y. and Sivaraman, D.M. and Suzuki, T. and Szumowski, S.C. and Tagami, M. and Taylor, M.S. and Terao, C. and Thodberg, M. and Thongjuea, S. and Tripathi, V. and Ulitsky, I. and Verardo, R. and Vorontsov, I.E. and Yamamoto, C. and Young, R.S. and Baillie, J.K. and Forrest, A.R.R. and Guigó, R. and Hoffman, M.M. and Hon, C.C. and Kasukawa, T. and Kauppinen, S. and Kere, J. and Lenhard, B. and Schneider, C. and Suzuki, H. and Yagi, K. and de Hoon, M.J.L. and Shin, J.W. and Carninci, P.
Genome Research 30 (7): 1060-1072. July 2020

B(1) inhomogeneity correction of RARE MRI with transceive surface radiofrequency probes.
Ramos Delgado, P. and Kuehne, A. and Periquito, J.S. and Millward, J.M. and Pohlmann, A. and Waiczies, S. and Niendorf, T.
Magnetic Resonance in Medicine 84 (5): 2684-2701. November 2020

The (un)conscious mouse as a model for human brain functions: key principles of anesthesia and their impact on translational neuroimaging.
Reimann, H.M. and Niendorf, T.
Frontiers in Systems Neuroscience 14 : 8. 19 May 2020

Phosphorylation of RAB7 by TBK1/IKKε regulates innate immune signaling in triple negative breast cancer.
Ritter, J.L. and Zhu, Z. and Thai, T.C. and Mahadevan, N.R. and Mertins, P. and Knelson, E.H. and Piel, B.P. and Han, S. and Jaffe, J.D. and Carr, S.A. and Barbie, D.A. and Barbie, T.U.
Cancer Research 80 (1): 44-56. January 2020

Diffusive dynamics and jamming in ensembles of robots with variable friction.
Rozenblit, A.D. and Porvatov, V.A. and Petrova, D.A. and Khakhalin, I.S. and Kotlyar, K.P. and Gritsenko, G.Y. and Evreiskaya, A.A. and Lebedeva, M.F. and Kretov, E.I. and Filonov, D.S. and Souslov, A. and Olekhno, N.A.
Journal of Physics: Conference Series 1695 (1): 012201. 28 December 2020

Deconstructing sarcomeric structure-function relations in titin-BioID knock-in mice.
Rudolph, F. and Fink, C. and Hüttemeister, J. and Kirchner, M. and Radke, M.H. and Lopez Carballo, J. and Wagner, E. and Kohl, T. and Lehnart, S.E. and Mertins, P. and Gotthardt, M.
Nature Communications 11 (1): 3133. 19 June 2020

Targeted proteomics reveals quantitative differences in low abundance glycosyltransferases of patients with Congenital Disorders of Glycosylation.
Sakson, R. and Beedgen, L. and Bernhard, P. and Alp, K.M. and Lübbehusen, N. and Röth, R. and Niesler, B. and Mayer, M.P. and Thiel, C. and Ruppert, T.
bioRxiv : 2020.09.15.291732. 16 September 2020

Intestinal expression of toll-like receptor gene changes early after gastric bypass surgery and association with type 2 diabetes remission.
Sala, P. and Torrinhas, R.S.M.M. and Fonseca, D.C. and Machado, N.M. and Singer, J. and Singer, P. and Ravacci, G.R. and Belarmino, G. and Ferreira, B.A.M. and Marques, M. and Ishida, R.K. and Guarda, I.F.M.S. and de Moura, E.G.H. and Sakai, P. and Santo, M.A. and Sunaga, D.Y. and Heymsfield, S.B. and Bezerra, D.P.D.S. and Corrêa-Giannella, M.L. and Waitzberg, D.L.
Nutrition 79-80 : 110885. November 2020

Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1).
Samir, M. and Vidal, R.O. and Abdallah, F. and Capece, V. and Seehusen, F. and Geffers, R. and Hussein, A. and Ali, A.A.H. and Bonn, S. and Pessler, F.
RNA Biology 17 (1): 112-124. January 2020

Development of high-specificity fluorescent probes to enable cannabinoid type 2 receptor studies in living cells.
Sarott, R.C. and Westphal, M. and Pfaff, P. and Korn, C. and Sykes, D.A. and Gazzi, T. and Brennecke, B. and Atz, K. and Weise, M. and Mostinski, Y. and Hompluem, P. and Koers, E. and Miljus, T. and Roth, N.J. and Asmelash, H. and Vong, M.C. and Piovesan, J. and Guba, W. and Rufer, A. and Kusznir, E.A. and Huber, S. and Raposo, C. and Zirwes, E.A. and Osterwald, A. and Pavlovic, A. and Moes, S. and Beck, J. and Benito-Cuesta, I. and Grande, T. and Ruiz de Martin, S. and Yeliseev, A.A. and Drawnel, F. and Widmer, G. and Holzer, D. and van der Wel, T. and Mandhair, H. and Yuan, C.Y. and Drobyski, W. and Saroz, Y. and Grimsey, N.L. and Honer, M. and Fingerle, J. and Gawrisch, K. and Romero, J. and Hillard, C. and Varga, Z. and van der Stelt, M. and Pacher, P. and Gertsch, J. and McCormick, P. and Ullmer, C. and Oddi, S. and Maccarrone, M. and Veprintsev, D. and Nazaré, M. and Grether, U. and Carreira, E.M.
Journal of the American Chemical Society 142 (40): 16953-16964. 7 October 2020

Exome sequencing in 38 patients with intracranial aneurysms and subarachnoid hemorrhage.
Sauvigny, T. and Alawi, M. and Krause, L. and Renner, S. and Spohn, M. and Busch, Al. and Kolbe, V. and Altmüller, J. and Löscher, B.S. and Franke, A. and Brockmann, C. and Lieb, W. and Westphal, M. and Schmidt, N.O. and Regelsberger, J. and Rosenberger, G.
Journal of Neurology 267 (9): 2533-2545. September 2020

Cold-induced urticarial autoinflammatory syndrome related to factor XII activation.
Scheffel, J. and Mahnke, N.A. and Hofman, Z.L.M. and Maat, S.d. and Wu, J. and Bonnekoh, H. and Pengelly, R.J. and Ennis, S. and Holloway, J.W. and Kirchner, M. and Mertins, P. and Church, M.K. and Maurer, M. and Maas, C. and Krause, K.
Nature Communications 11 (1): 179. 10 January 2020

Portability of scientific workflows in NGS data analysis: a case study.
Schiefer, C. and Bux, M. and Brandt, J. and Messerschmidt, C. and Reinert, K. and Beule, D. and Leser, U.
arXiv : 2006.03104. 4 June 2020

B-cell-specific Myd88 L252P expression causes a premalignant gammopathy resembling IgM MGUS.
Schmidt, K. and Sack, U. and Graf, R. and Winkler, W. and Popp, O. and Mertins, P. and Sommermann, T. and Kocks, C. and Rajewsky, K.
Frontiers in Immunology 11 : 602868. 1 December 2020

Evidence of pathogenicity for the leaky splice variant c.1066-6T>G in ATM.
Schröder, S. and Wieland, B. and Ohlenbusch, A. and Yigit, G. and Altmüller, J. and Boltshauser, E. and Dörk, T. and Brockmann, K.
American Journal of Medical Genetics A 182 (12): 2971-2975. December 2020

Generation and characterization of a mitotane-resistant adrenocortical cell line.
Seidel, E. and Walenda, G. and Messerschmidt, C. and Obermayer, B. and Peitzsch, M. and Wallace, P. and Bahethi, R. and Yoo, T. and Choi, M. and Schrade, P. and Bachmann, S. and Liebisch, G. and Eisenhofer, G. and Beule, D. and Scholl, U.
Endocrine Connections 9 (2): 122-134. February 2020

Collagen organization within the cartilage of TRPV4(-/-) mice studied with two-photon microscopy and polarized second harmonic generation.
Servin-Vences, M.R. and Poole, K. and Sporbert, A. and Lewin, G.R. and Margineanu, A.
Cytometry Part A 97 (5): 504-514. May 2020

Functional interplay of Epstein-Barr virus oncoproteins in a mouse model of B cell lymphomagenesis.
Sommermann, T. and Yasuda, T. and Ronen, J. and Wirtz, T. and Weber, T. and Sack, U. and Caeser, R. and Zhang, J. and Li, X. and Chu, V.T. and Jauch, A. and Unger, K. and Hodson, D.J. and Akalin, A. and Rajewsky, K.
Proceedings of the National Academy of Sciences of the United States of America 117 (25): 14421-14432. 23 June 2020

NMR quality control of fragment libraries for screening.
Sreeramulu, S. and Richter, C. and Kuehn, T. and Azzaoui, K. and Blommers, M.J.J. and Del Conte, R. and Fragai, M. and Trieloff, N. and Schmieder, P. and Nazaré, M. and Specker, E. and Ivanov, V. and Oschkinat, H. and Banci, L. and Schwalbe, H.
Journal of Biomolecular NMR 74 (10-11): 555-563. November 2020

Performance of compressed sensing for fluorine-19 magnetic resonance imaging at low signal-to-noise ratio conditions.
Starke, L. and Pohlmann, A. and Prinz, C. and Niendorf, T. and Waiczies, S.
Magnetic Resonance in Medicine 84 (2): 592-608. August 2020

Proteomic analysis reveals upregulation of ACE2, the putative SARS-CoV-2 receptor in pressure- but not volume-overloaded human hearts.
Stegbauer, J. and Kraus, M. and Nordmeyer, S. and Kirchner, M. and Ziehm, M. and Dommisch, H. and Kelle, S. and Kelm, M. and Baczko, I. and Landmesser, U. and Tschope, C. and Knosalla, C. and Falcke, M. and Schapranow, M.P. and Regitz-Zagrosek, V. and Mertins, P. and Kuehne, T.
Hypertension 76 (6): e41-e43. December 2020

Single-nuclei RNA-sequencing of plants.
Sunaga-Franze, D.Y. and Muino, J.M. and Braeuning, C. and Xu, X. and Zong, M. and Smaczniak, C. and Yan, W. and Fischer, C. and Vidal, R. and Kliem, M. and Kaufmann, K. and Sauer, S.
bioRxiv : 2020.11.14.382812. 16 November 2020

Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral density.
Swan, A.L. and Schütt, C. and Rozman, J. and Del Mar Muñiz Moreno, M. and Brandmaier, S. and Simon, M. and Leuchtenberger, S. and Griffiths, M. and Brommage, R. and Keskivali-Bond, P. and Grallert, H. and Werner, T. and Teperino, R. and Becker, L. and Miller, G. and Moshiri, A. and Seavitt, J.R. and Cissell, D.D. and Meehan, T.F. and Acar, E.F. and Lelliott, C.J. and Flenniken, A.M. and Champy, M.F. and Sorg, T. and Ayadi, A. and Braun, R.E. and Cater, H. and Dickinson, M.E. and Flicek, P. and Gallegos, J. and Ghirardello, E.J. and Heaney, J.D. and Jacquot, S. and Lally, C. and Logan, J.G. and Teboul, L. and Mason, J. and Spielmann, N. and McKerlie, C. and Murray, S.A. and Nutter, L.M.J. and Odfalk, K.F. and Parkinson, H. and Prochazka, J. and Reynolds, C.L. and Selloum, M. and Spoutil, F. and Svenson, K.L. and Vales, T.S. and Wells, S.E. and White, J.K. and Sedlacek, R. and Wurst, W. and Lloyd, K.K.C. and Croucher, P.I. and Fuchs, H. and Williams, G.R. and Bassett, D. and Gailus-Durner, V. and Herault, Y. and Mallon, A.M. and Brown, S.D.M. and Mayer-Kuckuk, P. and Hrabe de Angelis, M.
PLoS Genetics 16 (12): e1009190. 28 December 2020

Reflection of neuroblastoma intratumor heterogeneity in the new OHC-NB1 disease model.
Thole, T.M. and Toedling, J. and Sprüssel, A. and Pfeil, S. and Savelyeva, L. and Capper, D. and Messerschmidt, C. and Beule, D. and Groeneveld-Krentz, S. and Eckert, C. and Gambara, G. and Henssen, A.G. and Finkler, S. and Schulte, J.H. and Sieber, A. and Bluethgen, N. and Regenbrecht, C.R.A. and Künkele, A. and Lodrini, M. and Eggert, A. and Deubzer, H.E.
International Journal of Cancer 146 (4): 1031-1041. 15 February 2020

CRISPR/Cas9-mediated ELANE mutation correction in hematopoietic stem and progenitor cells to treat severe congenital neutropenia.
Tran, N.T. and Graf, R. and Wulf-Goldenberg, A. and Stecklum, M. and Strauß, G. and Kühn, R. and Kocks, C. and Rajewsky, K. and Chu, V.T.
Molecular Therapy 28 (12): 2621-2634. 2 December 2020

Rapid and deep-scale ubiquitylation profiling for biology and translational research.
Udeshi, N.D. and Mani, D.C. and Satpathy, S. and Fereshetian, S. and Gasser, J.A. and Svinkina, T. and Olive, M.E. and Ebert, B.L. and Mertins, P. and Carr, S.A.
Nature Communications 11 (1): 359. 17 January 2020

De novo mutations in FBRSL1 cause a novel recognizable malformation and intellectual disability syndrome.
Ufartes, R. and Berger, H. and Till, K. and Salinas, G. and Sturm, M. and Altmüller, J. and Nürnberg, P. and Thiele, H. and Funke, R. and Apeshiotis, N. and Langen, H. and Wollnik, B. and Borchers, A. and Pauli, S.
Human Genetics 139 (11): 1363-1379. November 2020

A census of cell types and paracrine interactions in colorectal cancer.
Uhlitz, F. and Bischoff, P. and Sieber, A. and Obermayer, B. and Blanc, E. and Lüthen, M. and Sawitzki, B. and Kamphues, C. and Beule, D. and Sers, C. and Horst, D. and Blüthgen, N. and Morkel, M.
bioRxiv : 2020.01.10.901579. 11 January 2020

Teichoic acids anchor distinct cell wall lamellae in an apically growing bacterium.
Ultee, E. and van der Aart, L.T. and Zhang, L. and van Dissel, D. and Diebolder, C.A. and van Wezel, G.P. and Claessen, D. and Briegel, A.
Communications Biology 3 (1): 314. 17 June 2020

Single-cell analyses of aging, inflammation and senescence.
Uyar, B. and Palmer, D. and Kowald, A. and Escobar, H.M. and Barrantes, I. and Möller, S. and Akalin, A. and Fuellen, G.
Ageing Research Reviews 64 : 101156. December 2020

Methods for automated single cell isolation and sub-cloning of human pluripotent stem cells.
Vallone, V.F. and Telugu, N.S. and Fischer, I. and Miller, D. and Schommer, S. and Diecke, S. and Stachelscheid, H.
Current Protocols in Stem Cell Biology 55 (1): e123. December 2020

The association between salt taste perception, mediterranean diet and metabolic syndrome: a cross-sectional study.
Veček, N.N. and Mucalo, L. and Dragun, R. and Miličević, T. and Pribisalić, A. and Patarčić, I. and Hayward, C. and Polašek, O. and Kolčić, I.
Nutrients 12 (4): 1164. April 2020

Dual-view light-sheet imaging through tilted glass interface using a deformable mirror.
Vladimirov, N. and Preusser, F. and Wisniewski, J. and Yaniv, Z. and Desai, R.A. and Woehler, A. and Preibisch, S.
bioRxiv : 2020.10.20.345306. 21 October 2020

Preclinical lead optimization of a 1,2,4-triazole based tankyrase inhibitor.
Waaler, J. and Leenders, R. and Sowa, S.T. and Alam Brinch, S. and Lycke, M. and Nieczypor, P. and Aertssen, S. and Murthy, S. and Galera-Prat, A. and Damen, E. and Wegert, A. and Nazare, M. and Lehtiö, L. and Krauss, S.
Journal of Medicinal Chemistry 63 (13): 6834-6846. 9 July 2020

Mutations in SREBF1, encoding sterol regulatory element binding transcription factor 1, cause autosomal-dominant IFAP syndrome.
Wang, H. and Humbatova, A. and Liu, Y. and Qin, W. and Lee, M. and Cesarato, N. and Kortüm, F. and Kumar, S. and Romano, M.T. and Dai, S. and Mo, R. and Sivalingam, S. and Motameny, S. and Wu, Y. and Wang, X. and Niu, X. and Geng, S. and Bornholdt, D. and Kroisel, P.M. and Tadini, G. and Walter, S.D. and Hauck, F. and Girisha, K.M. and Calza, A.M. and Bottani, A. and Altmüller, J. and Buness, A. and Yang, S. and Sun, X. and Ma, L. and Kutsche, K. and Grzeschik, K.H. and Betz, R.C. and Lin, Z.
American Journal of Human Genetics 107 (1): 34-45. 2 July 2020

MR elastography-based assessment of matrix remodeling at lesion sites associated with clinical severity in a model of multiple sclerosis.
Wang, S. and Millward, J.M. and Hanke-Vela, L. and Malla, B. and Pilch, K. and Gil-Infante, A. and Waiczies, S. and Mueller, S. and Boehm-Sturm, P. and Guo, J. and Sack, I. and Infante-Duarte, C.
Frontiers in Neurology 10 : 1382. 13 January 2020

Comparative analysis of the secretome and interactome of Trypanosoma cruzi and Trypanosoma rangeli reveals species specific immune response modulating proteins.
Watanabe Costa, R. and Batista, M.F. and Meneghelli, I. and Vidal, R.O. and Nájera, C.A. and Mendes, A.C. and Andrade-Lima, I.A. and da Silveira, J.F. and Lopes, L.R. and Ferreira, L.R.P. and Antoneli, F. and Bahia, D.
Frontiers in Immunology 11 : 1774. 27 August 2020

Revealing cytotoxic substructures in molecules using deep learning.
Webel, H.E. and Kimber, T.B. and Radetzki, S. and Neuenschwander, M. and Nazaré, M. and Volkamer, A.
Journal of Computer-Aided Molecular Design 34 (7): 731-746. July 2020

Uncoupling endosomal CLC chloride/proton exchange causes severe neurodegeneration.
Weinert, S. and Gimber, N. and Deuschel, D. and Stuhlmann, T. and Puchkov, D. and Farsi, Z. and Ludwig, C.F. and Novarino, G. and López-Cayuqueo, K.I. and Planells-Cases, R. and Jentsch, T.J.
EMBO Journal 39 (9): e103358. 4 May 2020

In vivo potassium MRI of the human heart.
Wenz, D. and Nagel, A.M. and Lott, J. and Kuehne, A. and Niesporek, S.C. and Niendorf, T.
Magnetic Resonance in Medicine 83 (1): 203-213. January 2020

IFT88 transports Gucy2d, a guanylyl cyclase, to maintain sensory cilia function in Drosophila.
Werner, S. and Zitouni, S. and Okenve-Ramos, P. and Mendonça, S. and Sporbert, A. and Spalthoff, C. and Göpfert, M.C. and Jana, S.C. and Bettencourt-Dias, M.
bioRxiv : 2020.12.15.417840. 15 December 2020

Integrative functional genomics decodes herpes simplex virus 1.
Whisnant, A.W. and Jürges, C.S. and Hennig, T. and Wyler, E. and Prusty, B. and Rutkowski, A.J. and L'hernault, A. and Djakovic, L. and Göbel, M. and Döring, K. and Menegatti, J. and Antrobus, R. and Matheson, N.J. and Künzig, F.W.H. and Mastrobuoni, G. and Bielow, C. and Kempa, S. and Liang, C. and Dandekar, T. and Zimmer, R. and Landthaler, M. and Grässer, F. and Lehner, P.J. and Friedel, C.C. and Erhard, F. and Dölken, L.
Nature Communications 11 (1): 2038. 27 April 2020

Sclerotiorin stabilizes the assembly of nonfibrillar Abeta42 oligomers with low toxicity, seeding activity, and beta-sheet content.
Wiglenda, T. and Groenke, N. and Hoffmann, W. and Manz, C. and Diez, L. and Buntru, A. and Brusendorf, L. and Neuendorf, N. and Schnoegl, S. and Haenig, C. and Schmieder, P. and Pagel, K. and Wanker, E.E.
Journal of Molecular Biology 432 (7): 2080-2098. 27 March 2020

Quantitative lineage analysis identifies a long-term progenitor niche for the hepato-pancreato-biliary organ system.
Willnow, D. and Benary, U. and Margineanu, A. and Vignola, M.L. and Pongrac, I.M. and Karimaddini, Z. and Vigilante, A. and Wolf, J. and Spagnoli, F.M.
bioRxiv : 2020.08.06.240176. 6 August 2020

Endogenous retrovirus-derived lncRNA BANCR promotes cardiomyocyte migration in humans and non-human primates.
Wilson, K.D. and Ameen, M. and Guo, H. and Abilez, O.J. and Tian, L. and Mumbach, M.R. and Diecke, S. and Qin, X. and Liu, Y. and Yang, H. and Ma, N. and Gaddam, S. and Cunningham, N.J. and Gu, M. and Neofytou, E. and Prado, M. and Hildebrandt, T.B. and Karakikes, I. and Chang, H.Y. and Wu, J.C.
Developmental Cell 54 (6): 694-709. 28 September 2020

Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention.
Wyler, E. and Mösbauer, K. and Franke, V. and Diag, A. and Gottula, L.T. and Arsie, R. and Klironomos, F. and Koppstein, D. and Ayoub, S. and Buccitelli, C. and Richter, A. and Legnini, I. and Ivanov, A. and Mari, T. and Del Giudice, S. and Papies, J.P. and Müller, M.A. and Niemeyer, D. and Selbach, M. and Akalin, A. and Rajewsky, N. and Drosten, C. and Landthaler, M.
bioRxiv : 2020.05.05.079194. 5 May 2020

Dual-mode detection of bacterial 16S ribosomal RNA in tissues.
Xu, S. and Zhang, Q. and Han, X. and Wang, Y. and Wang, X. and Nazaré, M. and Jiang, J.D. and Hu, H.Y.
ACS Sensors 5 (6): 1650-1656. 26 June 2020

The recurrent postzygotic pathogenic variant p.Glu47Lys in RHOA causes a novel recognizable neuroectodermal phenotype.
Yigit, G. and Saida, K. and DeMarzo, D. and Miyake, N. and Fujita, A. and Yang Tan, T. and White, S.M. and Wadley, A. and Toliat, M.R. and Motameny, S. and Franitza, M. and Stutterd, C.A. and Chong, P.F. and Kira, R. and Sengoku, T. and Ogata, K. and Guillen Sacoto, M.J. and Fresen, C. and Beck, B.B. and Nürnberg, P. and Dieterich, C. and Wollnik, B. and Matsumoto, N. and Altmüller, J.
Human Mutation 41 (3): 591-599. March 2020

Monensin, a novel potent MYB inhibitor, suppresses proliferation of acute myeloid leukemia and adenoid cystic carcinoma cells.
Yusenko, M.V. and Trentmann, A. and Andersson, M.K. and Ghani, L.A. and Jakobs, A. and Arteaga Paz, M.F. and Mikesch, J.H. and von Kries, J.P. and Stenman, G. and Klempnauer, K.H.
Cancer Letters 479 : 61-70. 1 June 2020

Rub1/NEDD8, a ubiquitin-like modifier, is also a ubiquitin modifier.
Zerath Gurevich, S. and Sinha, A. and Longworth, J. and Singh, R.K. and Lemma, B.E. and Thakur, A. and Popp, O. and Kornitzer, D. and Reis, N. and Scheffner, M. and Dittmar, G. and Pick, E. and Fushman, D. and Glickman, M.H.
bioRxiv : 2020.06.18.159145. 19 June 2020

Assessment of ethanol-induced toxicity on iPSC-derived human dopaminergic neurons using a novel high-throughput mitochondrial neuronal health (MNH) assay.
Zink, A. and Conrad, J. and Telugu, N.S. and Diecke, S. and Heinz, A. and Wanker, E. and Priller, J. and Prigione, A.
Frontiers in Cell and Developmental Biology 8 : 590540. 5 November 2020

Assessment of ethanol-induced toxicity on iPSC-derived human dopaminergic neurons using a novel high-throughput mitochondrial neuronal health (MNH) assay.
Zink, A. and Conrad, J. and Telugu, N.S. and Diecke, S. and Heinz, A. and Wanker, E.E. and Priller, J. and Prigione, A.
bioRxiv : 2020.08.12.237461. 12 August 2020

USP15 deubiquitinase safeguards hematopoiesis and genome integrity in hematopoietic stem cells and leukemia cells.
van den Berk, P. and Lancini, C. and Company, C. and Serresi, M. and Sanchez-Bailon, M.P. and Hulsman, D. and Pritchard, C. and Song, J.Y. and Schmitt, M.J. and Tanger, E. and Popp, O. and Mertins, P. and Huijbers, I.J. and Jacobs, H. and van Lohuizen, M. and Gargiulo, G. and Citterio, E.
Cell Reports 33 (13): 108533. 29 December 2020

2019

Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids.
Alcala, N. and Leblay, N. and Gabriel, A.A.G. and Mangiante, L. and Hervas, D. and Giffon, T. and Sertier, A.S. and Ferrari, A. and Derks, J. and Ghantous, A. and Delhomme, T.M. and Chabrier, A. and Cuenin, C. and Abedi-Ardekani, B. and Boland, A. and Olaso, R. and Meyer, V. and Altmuller, J. and Le Calvez-Kelm, F. and Durand, G. and Voegele, C. and Boyault, S. and Moonen, L. and Lemaitre, N. and Lorimier, P. and Toffart, A.C. and Soltermann, A. and Clement, J.H. and Saenger, J. and Field, J.K. and Brevet, M. and Blanc-Fournier, C. and Galateau-Salle, F. and Le Stang, N. and Russell, P.A. and Wright, G. and Sozzi, G. and Pastorino, U. and Lacomme, S. and Vignaud, J.M. and Hofman, V. and Hofman, P. and Brustugun, O.T. and Lund-Iversen, M. and Thomas de Montpreville, V. and Muscarella, L.A. and Graziano, P. and Popper, H. and Stojsic, J. and Deleuze, J.F. and Herceg, Z. and Viari, A. and Nuernberg, P. and Pelosi, G. and Dingemans, A.M.C. and Milione, M. and Roz, L. and Brcic, L. and Volante, M. and Papotti, M.G. and Caux, C. and Sandoval, J. and Hernandez-Vargas, H. and Brambilla, E. and Speel, E.J.M. and Girard, N. and Lantuejoul, S. and McKay, J.D. and Foll, M. and Fernandez-Cuesta, L.
Nature Communications 10 (1): 3407. 20 August 2019

Regulation of influenza a virus mRNA splicing by CLK1.
Artarini, A. and Meyer, M. and Shin, Y.J. and Huber, K. and Hilz, N. and Bracher, F. and Eros, D. and Orfi, L. and Keri, G. and Goedert, S. and Neuenschwander, M. and von Kries, J. and Domovich-Eisenberg, Y. and Dekel, N. and Szabadkai, I. and Lebendiker, M. and Horváth, Z. and Danieli, T. and Livnah, O. and Moncorgé, O. and Frise, R. and Barclay, W. and Meyer, T.F. and Karlas, A.
Antiviral Research 168 : 187-196. August 2019

Short-chain fatty acid propionate protects from hypertensive cardiovascular damage.
Bartolomaeus, H. and Balogh, A. and Yakoub, M. and Homann, S. and Markó, L. and Höges, S. and Tsvetkov, D. and Krannich, A. and Wundersitz, S. and Avery, E.G. and Haase, N. and Kräker, K. and Hering, L. and Maase, M. and Kusche-Vihrog, K. and Grandoch, M. and Fielitz, J. and Kempa, S. and Gollasch, M. and Zhumadilov, Z. and Kozhakhmetov, S. and Kushugulova, A. and Eckardt, K.U. and Dechend, R. and Rump, L.C. and Forslund, S.K. and Müller, D.N. and Stegbauer, J. and Wilck, N.
Circulation 139 (11): 1407-1421. 12 March 2019

Gain-of-function mutations in KCNN3 encoding the small-conductance Ca(2+)-activated K(+) channel SK3 cause Zimmermann-Laband syndrome.
Bauer, C.K. and Schneeberger, P.E. and Kortüm, F. and Altmüller, J. and Santos-Simarro, F. and Baker, L. and Keller-Ramey, J. and White, S.M. and Campeau, P.M. and Gripp, K.W. and Kutsche, K.
American Journal of Human Genetics 104 (6): 1139-1157. 6 June 2019

Tight junction proteins at the blood-brain barrier: far more than claudin-5.
Berndt, P. and Winkler, L. and Cording, J. and Breitkreuz-Korff, O. and Rex, A. and Dithmer, S. and Rausch, V. and Blasig, R. and Richter, M. and Sporbert, A. and Wolburg, H. and Blasig, I.E. and Haseloff, R.F.
Cellular and Molecular Life Sciences 76 (10): 1987-2002. May 2019

A resource of targeted mutant mouse lines for 5,061 genes.
Birling, M.C. and Yoshiki, A. and Adams, D.J. and Ayabe, S. and Beaudet, A.L. and Bottomley, J. and Bradley, A. and Brown, S.D.M. and Bürger, A. and Bushell, W. and Chiani, F. and Chin, H.J.G. and Christou, S. and Codner, G.F. and DeMayo, F.J. and Dickinson, M.E. and Doe, B. and Donahue, L.R. and Fray, M.D. and Gambadoro, A. and Gao, X. and Gertsenstein, M. and Gomez-Segura, A. and Goodwin, L.O. and Heaney, J.D. and Hérault, Y. and de Angelis, M.H. and Jiang, S.T. and Justice, M.J. and Kasparek, P. and King, R.E. and Kühn, R. and Lee, H. and Lee, Y.J. and Liu, Z. and Kent Lloyd, K.C. and Lorenzo, I. and Mallon, A.M. and McKerlie, C. and Meehan, T.F. and Newman, S. and Nutter, L.M.J. and Oh, G.T. and Pavlovic, G. and Ramirez-Solis, R. and Rosen, B. and Ryder, E.J. and Santos, L.A. and Schick, J. and Seavitt, J.R. and Sedlacek, R. and Seisenberger, C. and Seong, J.K. and Skarnes, W.C. and Sorg, T. and Steel, K.P. and Tamura, M. and Tocchini-Valentini, G.P. and Leo Wang, C.K. and Wardle-Jones, Ha. and Wattenhofer-Donzé, M. and Wells, S. and Willis, B.J. and Wood, J.A. and Wurst, W. and Xu, Y. and Teboul, L. and Murray, S.A.
bioRxiv : 844092. 22 November 2019

Identification and ranking of recurrent neo-epitopes in cancer.
Blanc, E. and Holtgrewe, M. and Dhamodaran, A. and Messerschmidt, C. and Willimsky, G. and Blankenstein, T. and Beule, D.
BMC Medical Genomics 12 : 171. 27 November 2019

Identification and regulation of the long non-coding RNA Heat2 in heart failure.
Boeckel, J.N. and Perret, M.F. and Glaser, S.F. and Seeger, T. and Heumüller, A.W. and Chen, W. and John, D. and Kokot, K.E. and Katus, H.A. and Haas, J. and Lackner, M.K. and Kayvanpour, E. and Grabe, N. and Dieterich, C. and von Haehling, S. and Ebner, N. and Hünecke, S. and Leuschner, F. and Fichtlscherer, S. and Meder, B. and Zeiher, A.M. and Dimmeler, S. and Keller, T.
Journal of Molecular and Cellular Cardiology 126 : 13-22. January 2019

The anti-amyloid compound DO1 decreases plaque pathology and neuroinflammation-related expression changes in 5xFAD transgenic mice.
Boeddrich, A. and Babila, J.T. and Wiglenda, T. and Diez, L. and Jacob, M. and Nietfeld, W. and Huska, M.R. and Haenig, C. and Groenke, N. and Buntru, A. and Blanc, E. and Meier, J.C. and Vannoni, E. and Erck, C. and Friedrich, B. and Martens, H. and Neuendorf, N. and Schnoegl, S. and Wolfer, D.P. and Loos, M. and Beule, D. and Andrade-Navarro, M.A. and Wanker, E.E.
Cell Chemical Biology 26 (1): 109-120. 17 January 2019

Cardiorenal sodium MRI at 7.0 Tesla using a 4/4 channel (1)H/(23)Na radiofrequency antenna array.
Boehmert, L. and Kuehne, A. and Waiczies, H. and Wenz, D. and Eigentler, T.W. and Funk, S. and von Knobelsdorff-Brenkenhoff, F. and Schulz-Menger, J. and Nagel, A.M. and Seeliger, E. and Niendorf, T.
Magnetic Resonance in Medicine 82 (6): 2343-2356. December 2019

WiPP: workflow for improved peak picking for gas chromatography-mass spectrometry (GC-MS) data.
Borgsmüller, N. and Gloaguen, Y. and Opialla, T. and Blanc, E. and Sicard, E. and Royer, A.L. and Le Bizec, B. and Durand, S. and Migné, C. and Pétéra, M. and Pujos-Guillot, E. and Giacomoni, F. and Guitton, Y. and Beule, D. and Kirwan, J.
Metabolites 9 (9): 171. 21 August 2019

WiPP: workflow for improved peak picking for gas chromatography-mass spectrometry (GC-MS) data.
Borgsmüller, N. and Gloaguen, Y. and Opialla, T. and Blanc, E. and Sicard, E. and Royer, A.L. and Le Bizec, B. and Durand, S. and Migné, C. and Pétéra, M. and Pujos-Guillot, E. and Giacomoni, F. and Guitton, Y. and Beule, D. and Kirwan, J.
bioRxiv : 713925. 24 July 2019

EU-OPENSCREEN: a novel collaborative approach to facilitate chemical biology.
Brennecke, P. and Rasina, D. and Aubi, O. and Herzog, K. and Landskron, J. and Cautain, B. and Vicente, F. and Quintana, J. and Mestres, J. and Stechmann, B. and Ellinger, B. and Brea, J. and Kolanowski, J.L. and Pilarski, R. and Orzaez, M. and Pineda-Lucena, A. and Laraia, L. and Nami, F. and Zielenkiewicz, P. and Paruch, K. and Hansen, E. and von Kries, J.P. and Neuenschwander, M. and Specker, E. and Bartunek, P. and Simova, S. and Leśnikowski, Z. and Krauss, S. and Lehtiö, L. and Bilitewski, U. and Brönstrup, M. and Taskén, K. and Jirgensons, A. and Lickert, H. and Clausen, M.H. and Andersen, J.H. and Vicent, M.J. and Genilloud, O. and Martinez, A. and Nazaré, M. and Fecke, W. and Gribbon, P.
SLAS Discovery 24 (3): 398-413. 1 March 2019

let-7 microRNAs regulate microglial function and suppress glioma growth through Toll-like receptor 7.
Buonfiglioli, A. and Efe, I.E. and Guneykaya, D. and Ivanov, A. and Huang, Y. and Orlowski, E. and Krüger, C. and Deisz, R.A. and Markovic, D. and Flüh, C. and Newman, A.G. and Schneider, U.C. and Beule, D. and Wolf, S.A. and Dzaye, O. and Gutmann, D.H. and Semtner, M. and Kettenmann, H. and Lehnardt, S.
Cell Reports 29 (11): 3460-3471. 10 December 2019

Simultaneous SPECT/MR imaging with a SiPM-based preclinical insert.
Carminati, M. and Baratelli, F.M. and Massara, M. and Occhipinti, M. and Nagy, K. and Nyitrai, Z. and Czeller, M. and Kühne, A. and Niendorf, T. and Valtorta, S. and Belloli, S. and Moresco, R.M. and Savi, A. and Iadanza, A. and Falini, A. and Politi, L.S. and Cadioli, M. and Fiorini, C.
In: 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference Proceedings (NSS/MIC), 10-17 Nov 2018, Sydney, NSW, Australia. 5 September 2019

Validation and performance assessment of a preclinical SiPM-based SPECT/MRI insert.
Carminati, M. and Baratelli, F.M. and Occhipinti, M. and Erlandsson, K. and Nagy, K. and Nyitrai, Z. and Czeller, M. and Kühne, A. and Niendorf, T. and Valtorta, S. and Belloli, S. and Moresco, R.M. and Savi, A. and Iadanza, A. and Falini, A. and Politi, L.S. and Cadioli, M. and Hutton, B.F. and Fiorini, C.
IEEE Transactions on Radiation and Plasma Medical Sciences 3 (4): 483-490. July 2019

Integrative approaches in structural biology: a more complete picture from the combination of individual techniques.
Cerofolini, L. and Fragai, M. and Ravera, E. and Diebolder, C.A. and Renault, L. and Calderone, V.
Biomolecules 9 (8): 370. 14 August 2019

Teashirt 1 (Tshz1) is essential for the development, survival and function of hypoglossal and phrenic motor neurons in mouse.
Chaimowicz, C. and Ruffault, P.L. and Chéret, C. and Woehler, A. and Zampieri, N. and Fortin, G. and Garratt, A.N. and Birchmeier, C.
Development 146 (17): dev174045. 6 September 2019

A missense mutation in SNRPE linked to non-syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing.
Chen, T. and Zhang, B. and Ziegenhals, T. and Prusty, A.B. and Fröhler, S. and Grimm, C. and Hu, Y. and Schaefke, B. and Fang, L. and Zhang, M. and Kraemer, N. and Kaindl, A.M. and Fischer, U. and Chen, W.
PLoS Genetics 15 (10): e1008460. 31 October 2019

Small and large ribosomal subunit deficiencies lead to distinct gene expression signatures that reflect cellular growth rate.
Cheng, Z. and Mugler, C.F. and Keskin, A. and Hodapp, S. and Chan, L.Y.L. and Weis, K. and Mertins, P. and Regev, A. and Jovanovic, M. and Brar, G.A.
Molecular Cell 73 (1): 36-47. 3 January 2019

Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.
Ciolli Mattioli, C. and Rom, A. and Franke, V. and Imami, K. and Arrey, G. and Terne, M. and Woehler, A. and Akalin, A. and Ulitsky, I. and Chekulaeva, M.
Nucleic Acids Research 47 (5): 2560-2573. 18 March 2019

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).
Cossarizza, A. and Chang, H.D. and Radbruch, A. and Acs, A. and Adam, D. and Adam-Klages, S. and Agace, W.W. and Aghaeepour, N. and Akdis, M. and Allez, M. and Almeida, L.N. and Alvisi, G. and Anderson, G. and Andrä, I. and Annunziato, F. and Anselmo, A. and Bacher, P. and Baldari, C.T. and Bari, S. and Barnaba, V. and Barros-Martins, J. and Battistini, L. and Bauer, W. and Baumgart, S. and Baumgarth, N. and Baumjohann, D. and Baying, B. and Bebawy, M. and Becher, B. and Beisker, W. and Benes, V. and Beyaert, R. and Blanco, A. and Boardman, D.A. and Bogdan, C. and Borger, J.G. and Borsellino, G. and Boulais, P.E. and Bradford, J.A. and Brenner, D. and Brinkman, R.R. and Brooks, A.E.S. and Busch, D.H. and Büscher, M. and Bushnell, T.P. and Calzetti, F. and Cameron, G. and Cammarata, I. and Cao, X. and Cardell, S.L. and Casola, S. and Cassatella, M.A. and Cavani, A. and Celada, A. and Chatenoud, L. and Chattopadhyay, P.K. and Chow, S. and Christakou, E. and Čičin-Šain, L. and Clerici, M. 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Novel mutations in KMT2B offer pathophysiological insights into childhood-onset progressive dystonia.
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Untargeted metabolomic analysis and pathway discovery in perinatal asphyxia and hypoxic-ischaemic encephalopathy.
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PRISMA: Protein Interaction Screen on Peptide Matrix reveals interaction footprints and modifications- dependent interactome of intrinsically disordered C/EBPb.
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The choice of embedding media affects image quality, tissue R(2)*, and susceptibility behaviors in post‐mortem brain MR microscopy at 7.0T.
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A helminth chitinase structurally similar to mammalian chitinase displays immunomodulatory properties.
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A cellular model of Brugada syndrome with SCN10A variants using human-induced pluripotent stem cell-derived cardiomyocytes.
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Studying Brugada syndrome with an SCN1B variants in human-induced pluripotent stem cell-derived cardiomyocytes.
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Associations of the metabolic syndrome and its components with cognitive impairment in older adults.
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Eleven loci with new reproducible genetic associations with allergic disease risk.
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Cluster binding studies with two anti-Thomsen-Friedenreich (anti-core-1, CD176, TF) antibodies: evidence for a multiple TF epitope.
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Unstable TTTTA/TTTCA expansions in MARCH6 are associated with Familial Adult Myoclonic Epilepsy type 3.
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Modified protocol of harvesting, extraction, and normalization approaches for gas chromatography mass spectrometry-based metabolomics analysis of adherent cells grown under high fetal calf serum conditions.
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The Parkinson's disease-linked Leucine-rich repeat kinase 2 (LRRK2) is required for insulin-stimulated translocation of GLUT4.
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Scientific Reports 9 (1): 4515. 14 March 2019

Towards depth-resolved characterization of hemodynamics and oxygenation in the rat kidney.
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Near infrared spectroscopy system for quantitative monitoring of renal hemodynamics and oxygenation in rats.
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HDAC4 mutations cause diabetes and induce β-cell FoxO1 nuclear exclusion.
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Molecular Genetics & Genomic Medicine 7 (5): e602. May 2019

Lung purinoceptor activation triggers ventilator-induced brain injury.
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Critical Care Medicine 47 (11): e911-e918. November 2019

Combined targeted resequencing of cytosine DNA methylation and mutations of DNA repair genes with potential use for poly(ADP-ribose) polymerase 1 inhibitor sensitivity testing.
Grimm, C. and Fischer, A. and Farrelly, A.M. and Kalachand, R. and Castiglione, R. and Wasserburger, E. and Hussong, M. and Schultheis, Anne M and Altmüller, J. and Thiele, H. and Reinhardt, H.C. and Hauschulz, K. and Hennessy, B.T. and Herwig, R. and Lienhard, M. and Buettner, R. and Schweiger, M.R.
Journal of Molecular Diagnostics 21 (2): 198-213. March 2019

Comprehensive gene expression meta-analysis identifies signature genes that distinguish microglia from peripheral monocytes/macrophages in health and glioma.
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Acta Neuropathologica Communications 7 (1): 20. 14 February 2019

MRG-1/MRG15 is a barrier for germ cell to neuron reprogramming in Caenorhabditis elegans.
Hajduskova, M. and Baytek, G. and Kolundzic, E. and Gosdschan, A. and Kazmierczak, M. and Ofenbauer, A. and Beato del Rosal, M.L. and Herzog, S. and ul Fatima, N. and Mertins, P. and Seelk-Müthel, S. and Tursun, B.
Genetics 211 (1): 121-139. 1 January 2019

R-spondin 3 promotes stem cell recovery and epithelial regeneration in the colon.
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Nature Communications 10 (1): 4368. 25 September 2019

Escalation of memory length in finite populations.
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Artificial Life 25 (1): 22-32. 2 April 2019

Deleterious somatic variants in 473 consecutive individuals with ovarian cancer: results of the observational AGO-TR1 study (NCT02222883).
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Journal of Medical Genetics 56 (9): 574-580. September 2019

Multiregion human bladder cancer sequencing reveals tumour evolution, bladder cancer phenotypes and implications for targeted therapy.
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Journal of Pathology 248 (2): 230-242. June 2019

Structural features of tight-junction proteins.
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International Journal of Molecular Sciences 20 (23): 6020. 29 November 2019

Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine.
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Clinical Epigenetics 11 (1): 65. 27 April 2019

A synthetic epoxyeicosatrienoic acid analogue prevents the initiation of ischemic acute kidney injury.
Hoff, U. and Bubalo, G. and Fechner, M. and Blum, M. and Zhu, Y. and Pohlmann, A. and Hentschel, J. and Arakelyan, K. and Seeliger, E. and Flemming, B. and Gürgen, D. and Rothe, M. and Niendorf, T. and Manthati, V.L. and Falck, J.R. and Haase, M. and Schunck, W.H. and Dragun, D.
Acta Physiologica 227 (2): e13297. October 2019

Genetics of intellectual disability in consanguineous families.
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Molecular Psychiatry 24 (7): 1027-1039. July 2019

SURF1 mutations causative of Leigh syndrome impair human neurogenesis.
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bioRxiv : 551390. 20 February 2019

Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia.
James, A.R. and Schroeder, M.P. and Neumann, M. and Bastian, L. and Eckert, C. and Gökbuget, N. and Tanchez, J.O. and Schlee, C. and Isaakidis, K. and Schwartz, S. and Burmeister, T. and von Stackelberg, A. and Rieger, M.A. and Göllner, S. and Horstman, M. and Schrappe, M. and Kirschner-Schwabe, R. and Brüggemann, M. and Müller-Tidow, C. and Serve, H. and Akalin, A. and Baldus, C.D.
Journal of Hematology & Oncology 12 (1): 8. 14 January 2019

Unique properties of PTEN-L contribute to neuroprotection in response to ischemic-like stress.
Jochner, M.C.E. and An, J. and Lättig-Tünnemann, G. and Kirchner, M. and Dagane, A. and Dittmar, G. and Dirnagl, U. and Eickholt, B.J. and Harms, C.
Scientific Reports 9 (1): 3183. 28 February 2019

SSBP1 mutations in dominant optic atrophy with variable retinal degeneration.
Jurkute, N. and Leu, C. and Pogoda, H.M. and Arno, G. and Robson, A.G. and Nürnberg, G. and Altmüller, J. and Thiele, H. and Motameny, S. and Toliat, M.R. and Powell, K. and Höhne, W. and Michaelides, M. and Webster, A.R. and Moore, A.T. and Hammerschmidt, M. and Nürnberg, P. and Yu-Wai-Man, P. and Votruba, M.
Annals of Neurology 86 (3): 368-383. September 2019

Novel PNKP mutations causing defective DNA strand break repair and PARP1 hyperactivity in MCSZ.
Kalasova, I. and Hanzlikova, H. and Gupta, N. and Li, Y. and Altmüller, J. and Reynolds, J.J. and Stewart, G.S. and Wollnik, B. and Yigit, G. and Caldecott, K.W.
Neurology Genetics 5 (2): e320. April 2019

Interferon signature in patients with STAT1 gain-of-function mutation is epigenetically determined.
Kaleviste, E. and Saare, M. and Leahy, T.R. and Bondet, V. and Duffy, D. and Mogensen, T. and Jørgensen, S.E. and Nurm, H. and Ip, W. and Davies, E.G. and Sauer, S. and Syvänen, A.C. and Milani, L. and Peterson, P. and Kisand, K.
European Journal of Immunology 49 (5): 790-800. May 2019

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling.
Karabacak Calviello, A. and Hirsekorn, A. and Wurmus, R. and Yusuf, D. and Ohler, U.
Genome Biology 20 (1): 42. 21 February 2019

Biallelic variant in AGTPBP1 causes infantile lower motor neuron degeneration and cerebellar atrophy.
Karakaya, M. and Paketci, C. and Altmueller, J. and Thiele, H. and Hoelker, I. and Yis, U. and Wirth, B.
American Journal of Medical Genetics Part A 179 (8): 1580-1584. August 2019

Vinylphosphonites for staudinger-induced chemoselective peptide cyclization and functionalization.
Kasper, M.A and Glanz, M. and Oder, A. and Schmieder, P. and von Kries, J.P. and Hackenberger, C.P.R.
Chemical Science 10 (25): 6322-6329. 7 July 2019

HSPA6: s new autosomal recessive candidate gene for the VATER/VACTERL malformation spectrum.
Kause, F. and Zhang, R. and Ludwig, M. and Schmiedeke, E. and Rissmann, A. and Thiele, H. and Altmueller, J. and Herms, S. and Hilger, A.C. and Hildebrandt, F. and Reutter, H.
Birth Defects Research 111 (10): 591-597. 1 June 2019

Systems biology approach to study cancer metabolism.
Kempa, S. and Royla, N.
In: Encyclopedia of Cancer. Elsevier / Academic Press, 426-428. ISBN 978-0-12-812485-7 2019

Biobanking for metabolomics and lipidomics in precision medicine.
Kirwan, J.A. and Kaddurah-Daouk, R. and Mitchell, T. and Pischon, T. and Schmidt, M.A. and Velagapudi, V.
Clinical Chemistry 65 (7): 827-832. 28 June 2019

A protocol for laser microdissection (LMD) followed by transcriptome analysis of plant reproductive tissue in phylogenetically distant angiosperms.
Kivivirta, K. and Herbert, D. and Lange, M. and Beuerlein, K. and Altmüller, J. and Becker, A.
Plant Methods 15 : 151. 16 December 2019

m(6)A-mRNA methylation regulates cardiac gene expression and cellular growth.
Kmietczyk, V. and Riechert, E. and Kalinski, L. and Boileau, E. and Malovrh, E. and Malone, B. and Gorska, A. and Hofmann, C. and Varma, E. and Jürgensen, L. and Kamuf-Schenk, V. and Altmüller, J. and Tappu, R. and Busch, M. and Most, P. and Katus, H.A. and Dieterich, C. and Völkers, M.
Life Science Alliance 2 (2): e201800233. April 2019

Cognitive impairment is associated with absolute intraoperative frontal α-band power but not with baseline α-band power: a pilot study.
Koch, S. and Feinkohl, I. and Chakravarty, S. and Windmann, V. and Lichtner, G. and Pischon, T. and Brown, E.N. and Spies, C.
Dementia and Geriatric Cognitive Disorders 48 : 1-2. December 2019

A novel IKK- and proteasome-independent mechanism of RelA activation triggers senescence associated secretome via transcriptional repression of NFKBIA.
Kolesnichenko, M. and Mikuda, N. and Höpken, U.E. and Milanovic, M. and Tufan, A.B. and Uyar, B. and Sun, W. and Schleich, K. and von Hoff, L. and Willenbrock, M. and Krahn, I. and Jungmann, S. and Hinz, M. and Akalin, A. and Lee, S. and Schmidt-Ullrich, R. and Schmitt, C.A. and Scheidereit, C.
bioRxiv : 2019.12.19.882225. 20 December 2019

Rare variants in BNC2 are implicated in autosomal-dominant congenital lower urinary-tract obstruction.
Kolvenbach, C.M. and Dworschak, G.C. and Frese, S. and Japp, A.S. and Schuster, P. and Wenzlitschke, N. and Yilmaz, Ö. and Lopes, F.M. and Pryalukhin, A. and Schierbaum, L. and van der Zanden, L.F.M. and Kause, F. and Schneider, R. and Taranta-Janusz, K. and Szczepańska, M. and Pawlaczyk, K. and Newman, W.G. and Beaman, G.M. and Stuart, H.M. and Cervellione, R.M. and Feitz, W.F.J. and van Rooij, I.A.L.M. and Schreuder, M.F. and Steffens, M. and Weber, S. and Merz, W.M. and Feldkötter, M. and Hoppe, B. and Thiele, H. and Altmüller, J. and Berg, C. and Kristiansen, G. and Ludwig, M. and Reutter, H. and Woolf, A.S. and Hildebrandt, F. and Grote, P. and Zaniew, M. and Odermatt, B. and Hilger, A.C.
American Journal of Human Genetics 104 (5): 994-1006. 2 May 2019

Janggu: deep learning for genomics.
Kopp, W. and Monti, R. and Tamburrini, A. and Ohler, U. and Akalin, A.
bioRxiv : 700450. 16 July 2019

A curated resource for phosphosite-specific signature analysis.
Krug, K. and Mertins, P. and Zhang, B. and Hornbeck, P. and Raju, R. and Ahmad, R. and Szucs, M. and Mundt, F. and Forestier, D. and Jane-Valbuena, J. and Keshishian, H. and Gillette, M.A. and Tamayo, P. and Mesirov, J.P. and Jaffe, J.D. and Carr, S.A. and Mani, D.R.
Molecular & Cellular Proteomics 18 (3): 576-593. 1 March 2019

AltamISA: a Python API for ISA-Tab files.
Kuhring, M. and Nieminen, M. and Kirwan, J. and Beule, D. and Holtgrewe, M.
Journal of Open Source Software 4 (40): 1610. 20 August 2019

Targeted panel sequencing in pediatric primary cardiomyopathy supports a critical role of TNNI3.
Kühnisch, J. and Herbst, C. and Al-Wakeel-Marquard, N. and Dartsch, J. and Holtgrewe, M. and Baban, A. and Mearini, G. and Hardt, J. and Kolokotronis, K. and Gerull, B. and Carrier, L. and Beule, D. and Schubert, S. and Messroghli, D. and Degener, F. and Berger, F. and Klaassen, S.
Clinical Genetics 96 (6): 549-559. December 2019

Context-specific regulation of cell survival by a miRNA-controlled BIM rheostat.
Labi, V. and Peng, S. and Klironomos, F. and Munschauer, M. and Kastelic, N. and Chakraborty, T. and Schoeler, K. and Derudder, E. and Martella, M. and Mastrobuoni, G. and Hernandez-Miranda, L.R. and Lahmann, I. and Kocks, C. and Birchmeier, C. and Kempa, S. and Quintanilla-Martinez de Fend, L. and Landthaler, M. and Rajewsky, N. and Rajewsky, K.
Genes & Development 33 : 23-24. 7 November 2019

Oscillations of MyoD and Hes1 proteins regulate the maintenance of activated muscle stem cells.
Lahmann, I. and Bröhl, D. and Zyrianova, T. and Isomura, A. and Czajkowski, M.T. and Kapoor, V. and Griger, J. and Ruffault, P.L. and Mademtzoglou, D. and Zammit, P.S. and Wunderlich, T. and Spuler, S. and Kühn, R. and Preibisch, S. and Wolf, J. and Kageyama, R. and Birchmeier, C.
Genes & Development 33 (9-10): 524-535. 1 May 2019

Homozygous frameshift mutations in FAT1 cause a syndrome characterized by colobomatous-microphthalmia, ptosis, nephropathy and syndactyly.
Lahrouchi, N. and George, A. and Ratbi, I. and Schneider, R. and Elalaoui, S.C. and Moosa, S. and Bharti, S. and Sharma, R. and Abu-Asab, M. and Onojafe, F. and Adadi, N. and Lodder, E.M. and Laarabi, F.Z. and Lamsyah, Y. and Elorch, H. and Chebbar, I. and Postma, A.V. and Lougaris, V. and Plebani, A. and Altmueller, J. and Kyrieleis, H. and Meiner, V. and McNeill, H. and Bharti, K. and Lyonnet, S. and Wollnik, B. and Henrion-Caude, A. and Berraho, A. and Hildebrandt, F. and Bezzina, C.R. and Brooks, B.P. and Sefiani, A.
Nature Communications 10 (1): 1180. 12 March 2019

Collagen I-based scaffolds negatively impact fracture healing in a mouse-osteotomy-model although used routinely in research and clinical application.
Lang, A. and Kirchner, M. and Stefanowski, J. and Durst, M. and Weber, M.C. and Pfeiffenberger, M. and Damerau, A. and Hauser, A.E. and Hoff, P. and Duda, G.N. and Buttgereit, F. and Schmidt-Bleek, K. and Gaber, T.
Acta Biomaterialia 86 : 171-184. 1 March 2019

Social networks and protest participation: evidence from 130 million Twitter users.
Larson, J.M. and Nagler, J. and Ronen, J. and Tucker, J.A.
American Journal of Political Science 63 (3): 690-705. July 2019

Efficient and precise CRISPR/Cas9-mediated MECP2 modifications in human-induced pluripotent stem cells.
Le, T.T.H. and Tran, N.T. and Dao, T.M.L. and Nguyen, D.D. and Do, H.D. and Ha, T.L. and Kühn, R. and Nguyen, T.L. and Rajewsky, K. and Chu, V.T.
Frontiers in Genetics 10 : 625. July 2019

Activation of PDGF pathway links LMNA mutation to dilated cardiomyopathy.
Lee, J. and Termglinchan, V. and Diecke, S. and Itzhaki, I. and Lam, C.K. and Garg, P. and Lau, E. and Greenhaw, M. and Seeger, T. and Wu, H. and Zhang, J.Z and Chen, X. and Gil, I.P. and Ameen, M. and Sallam, K. and Rhee, J.W. and Churko, J.M. and Chaudhary, R. and Chour, T. and Wang, P.J. and Snyder, M.P. and Chang, H.Y. and Karakikes, I. and Wu, J.C.
Nature 572 (7769): 335-340. 15 August 2019

The histone demethylase PHF8 facilitates alternative splicing of the histocompatibility antigen HLA-G.
Leisegang, M.S. and Gu, L. and Preussner, J. and Günther, S. and Hitzel, J. and Ratiu, C. and Weigert, A. and Chen, W. and Schwarz, E.C. and Looso, M. and Fork, C. and Brandes, R.P.
FEBS Letters 593 (5): 487-498. March 2019

Intestinal-cell kinase and juvenile myoclonic epilepsy.
Lerche, H. and Berkovic, S.F. and Lowenstein, D.H.
New England Journal of Medicine 380 (16): e24. 18 April 2019

Unknown mutations and genotype/phenotype correlations of autosomal recessive congenital ichthyosis in patients from Saudi Arabia and Pakistan.
Lima Cunha, D. and Alakloby, O.M. and Gruber, R. and Kakar, N. and Ahmad, J. and Alawbathani, S. and Plank, R. and Eckl, K. and Krabichler, B. and Altmüller, J. and Nürnberg, P. and Zschocke, J. and Borck, G. and Schmuth, M. and Alabdulkareem, A.S. and Abdulaziz Alnutaifi, K. and Hennies, H.C.
Molecular Genetics & Genomic Medicine 7 (3): e539. March 2019

Calcyphosine-like (CAPSL) is regulated in multiple symmetric lipomatosis and is involved in adipogenesis.
Lindner, A. and Marbach, F. and Tschernitz, S. and Ortner, C. and Berneburg, M. and Felthaus, O. and Prantl, L. and Kye, M.J. and Rappl, G. and Altmüller, J. and Thiele, H. and Schreml, S. and Schreml, J.
Scientific Reports 9 (1): 8444. 11 June 2019

Sex-specific metabolic and functional differences in human umbilical vein endothelial cells from twin pairs.
Lorenz, M. and Blaschke, B. and Benn, A. and Hammer, E. and Witt, E. and Kirwan, J. and Fritsche-Guenther, R. and Gloaguen, Y. and Bartsch, C. and Vietzke, A. and Kramer, F. and Kappert, K. and Brunner, P. and Nguyen, H.G. and Dreger, H. and Stangl, K. and Knaus, P. and Stangl, V.
Atherosclerosis 291 : 99-106. December 2019

Combined analysis of metabolomes, proteomes, and transcriptomes of hepatitis C virus-infected cells and liver to identify pathways associated with disease development.
Lupberger, J. and Croonenborghs, T. and Roca Suarez, A.A. and Van Renne, N. and Jühling, F. and Oudot, M.A. and Virzì, A. and Bandiera, S. and Jamey, C. and Meszaros, G. and Brumaru, D. and Mukherji, A. and Durand, S.C. and Heydmann, L. and Verrier, E.R. and El Saghire, H. and Hamdane, N. and Bartenschlager, R. and Fereshetian, S. and Ramberger, E. and Sinha, R. and Nabian, M. and Everaert, C. and Jovanovic, M. and Mertins, P. and Carr, S.A. and Chayama, K. and Dali-Youcef, N. and Ricci, R. and Bardeesy, N.M. and Fujiwara, N. and Gevaert, O. and Zeisel, M.B. and Hoshida, Y. and Pochet, N. and Baumert, T.F.
Gastroenterology 157 (2): 537-551. August 2019

SorCS2 controls functional expression of amino acid transporter EAAT3 and protects neurons from oxidative stress and epilepsy-induced pathology.
Malik, A.R. and Szydlowska, K. and Nizinska, K. and Asaro, A. and van Vliet, E.A. and Popp, O. and Dittmar, G. and Fritsche-Guenther, R. and Kirwan, J.A. and Nykjaer, A. and Lukasiuk, K. and Aronica, E. and Willnow, T.E.
Cell Reports 26 (10): 2792-2804. 5 March 2019

The discovery of a LEMD2-associated nuclear envelopathy with early progeroid appearance suggests advanced applications for AI-driven facial phenotyping.
Marbach, F. and Rustad, C.F. and Riess, A. and Đukić, D. and Hsieh, T.C. and Jobani, I. and Prescott, T. and Bevot, A. and Erger, F. and Houge, G. and Redfors, M. and Altmueller, J. and Stokowy, T. and Gilissen, C. and Kubisch, C. and Scarano, E. and Mazzanti, L. and Fiskerstrand, T. and Krawitz, P.M. and Lessel, D. and Netzer, C.
American Journal of Human Genetics 104 (4): 749-757. 4 April 2019

A new highly thyrotropin receptor-selective small molecule antagonist with potential for the treatment of Graves' orbitopathy.
Marcinkowski, P. and Hoyer, I. and Specker, E. and Furkert, J. and Rutz, C. and Neuenschwander, M. and Sobottka, S. and Sun, H. and Nazare, M. and Berchner-Pfannschmidt, U. and von Kries, J.P. and Eckstein, A. and Schülein, R. and Krause, G.
Thyroid 29 (1): 111-123. 23 January 2019

Human muscle-derived CLEC14A-positive cells regenerate muscle independent of PAX7.
Marg, A. and Escobar Fernandez, H. and Karaiskos, N. and Grunwald, S.A. and Metzler, E. and Kieshauer, J. and Sauer, S. and Pasemann, D. and Malfatti, E. and Mompoint, D. and Quijano-Roy, S. and Boltengagen, A. and Schneider, J. and Schülke, M. and Kunz, S. and Carlier, R. and Birchmeier, C. and Amthor, H. and Spuler, A. and Kocks, C. and Rajewsky, N. and Spuler, S.
Nature Communications 10 (1): 5776. 18 December 2019

eNOS-NO-induced small blood vessel relaxation requires EHD2-dependent caveolae stabilization.
Matthaeus, C. and Lian, X. and Kunz, S. and Lehmann, M. and Zhong, C. and Bernert, C. and Lahmann, I. and Müller, D.N. and Gollasch, M. and Daumke, O.
PLoS ONE 14 (10): e0223620. 10 October 2019

EHD2-mediated restriction of caveolar dynamics regulates cellular lipid uptake.
Matthäus, C. and Lahmann, I. and Kunz, S. and Jonas, W. and Alves Melo, A. and Lehmann, M. and Larsson, E. and Lundmark, R. and Kern, M. and Blüher, M. and Müller, D.N. and Haucke, V. and Schürmann, A. and Birchmeier, C. and Daumke, O.
bioRxiv : 511709. 7 March 2019

High-throughput screening for modulators of CFTR activity based on genetically engineered cystic fibrosis disease-specific iPSCs.
Merkert, S. and Schubert, M. and Olmer, R. and Engels, L. and Radetzki, S. and Veltman, M. and Scholte, B.J. and Zöllner, J. and Pedemonte, N. and Galietta, L.J.V. and von Kries, J.P. and Martin, U.
Stem Cell Reports 12 (6): 1389-1403. 11 June 2019

Distinct immune evasion in APOBEC-enriched, HPV-negative HNSCC.
Messerschmidt, C. and Obermayer, B. and Klinghammer, K. and Ochsenreither, S. and Treue, D. and Stenzinger, A. and Glimm, H. and Fröhling, S. and Kindler, T. and Brandts, C.H. and Schulze-Osthoff, K. and Weichert, W. and Tinhofer, I. and Klauschen, F. and Keilholz, U. and Beule, D. and Rieke, D.T.
bioRxiv : 586396. 28 March 2019

Application of europium-doped very small iron oxide nanoparticles to visualize neuroinflammation with MRI and fluorescence microscopy.
Millward, J.M. and de Schellenberger, A.A. and Berndt, D. and Hanke-Vela, L. and Schellenberger, E. and Waiczies, S. and Taupitz, M. and Kobayashi, Y. and Wagner, S. and Infante-Duarte, C.
Neuroscience 403 : 136-144. 1 April 2019

Autosomal-recessive mutations in MESD cause osteogenesis imperfecta.
Moosa, S. and Yamamoto, G.L. and Garbes, L. and Keupp, K. and Beleza-Meireles, A. and Moreno, C.A. and Valadares, E.R. and de Sousa, S.B. and Maia, S. and Saraiva, J. and Honjo, R.S. and Kim, C.A. and Cabral de Menezes, H. and Lausch, E. and Lorini, P.V. and Lamounier, A. and Carniero, T.C.B. and Giunta, C. and Rohrbach, M. and Janner, M. and Semler, O. and Beleggia, F. and Li, Y. and Yigit, G. and Reintjes, N. and Altmüller, J. and Nürnberg, P. and Cavalcanti, D.P. and Zabel, B. and Warman, M.L. and Bertola, D.R. and Wollnik, B. and Netzer, C.
American Journal of Human Genetics 105 (4): 836-843. 3 October 2019

Proteomic and transcriptomic changes in hibernating grizzly bears reveal metabolic and signaling pathways that protect against muscle atrophy.
Mugahid, D.A. and Sengul, T.G. and You, X. and Wang, Y. and Steil, L. and Bergmann, N. and Radke, M.H. and Ofenbauer, A. and Gesell-Salazar, M. and Balogh, A. and Kempa, S. and Tursun, B. and Robbins, C.T. and Völker, U. and Chen, W. and Nelson, L. and Gotthardt, M.
Scientific Reports 9 (1): 19976. 27 December 2019

Deciphering human ribonucleoprotein regulatory networks.
Mukherjee, N. and Wessels, H.H. and Lebedeva, S. and Sajek, M. and Ghanbari, M. and Garzia, A. and Munteanu, A. and Yusuf, D. and Farazi, T. and Hoell, J.I. and Akat, K.M. and Akalin, A. and Tuschl, T. and Ohler, U.
Nucleic Acids Research 47 (2): 570-581. 25 January 2019

Mutations in PIGB cause an inherited GPI biosynthesis defect with an axonal neuropathy and metabolic abnormality in severe cases.
Murakami, Y. and Nguyen, T.T.M. and Baratang, N. and Raju, P.K. and Knaus, A. and Ellard, S. and Jones, G. and Lace, B. and Rousseau, J. and Ajeawung, N.F. and Kamei, A. and Minase, G. and Akasaka, M. and Araya, N. and Koshimizu, E. and van den Ende, J. and Erger, F. and Altmüller, J. and Krumina, Z. and Strautmanis, J. and Inashkina, I. and Stavusis, J. and El-Gharbawy, A. and Sebastian, J. and Puri, R.D. and Kulshrestha, S. and Verma, I.C. and Maier, E.M. and Haack, T.B. and Israni, A. and Baptista, J. and Gunning, A. and Rosenfeld, J.A and Liu, P. and Joosten, M. and Rocha, M.E. and Hashem, M.O. and Aldhalaan, H.M. and Alkuraya, F.S. and Miyatake, S. and Matsumoto, N. and Krawitz, P.M. and Rossignol, E. and Kinoshita, T. and Campeau, P.M.
American Journal of Human Genetics 105 (2): 384-394. 1 August 2019

The conserved histone chaperone LIN-53 links lifespan and healthspan regulation in C. elegans.
Müthel, S. and Uyar, B. and He, M. and Krause, A. and Vitrinel, B. and Bulut, S. and Vasiljevic, D. and Akalin, A. and Kempa, S. and Tursun, B.
bioRxiv : 539015. 2 February 2019

The conserved histone chaperone LIN-53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans.
Müthel, S. and Uyar, B. and He, M. and Krause, A. and Vitrinel, B. and Bulut, S. and Vasiljevic, D. and Marchal, I. and Kempa, S. and Akalin, A. and Tursun, B.
Aging Cell 18 (6): e13012. December 2019

Human cardiac magnetic resonance at ultrahigh fields : technical innovations, early clinical applications and opportunities for discoveries.
Niendorf, T. and Huelnhagen, T. and Winter, L. and Paul, K.
In: Cardiovascular magnetic resonance : a companion to Braunwald's heart disease. Elsevier, Philadelphia, PA, 142-160. ISBN 978-0-323-41561-3 2019

Assessment of genetic variant burden in epilepsy-associated brain lesions.
Niestroj, L.M. and May, P. and Artomov, M. and Kobow, K. and Coras, R. and Pérez-Palma, E. and Altmüller, J. and Thiele, H. and Nürnberg, P. and Leu, C. and Palotie, A. and Daly, M.J. and Klein, K.M. and Beschorner, R. and Weber, Y.G. and Blümcke, I. and Lal, D.
European Journal of Human Genetics 27 (11): 1738-1744. November 2019

DCAF8, a novel MuRF1 interaction partner, promotes muscle atrophy.
Nowak, M. and Suenkel, B. and Porras, P. and Migotti, R. and Schmidt, F. and Kny, M. and Zhu, X. and Wanker, E.E. and Dittmar, G. and Fielitz, J. and Sommer, T.
Journal of Cell Science 132 (17): jcs233395. 6 September 2019

Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing.
Numberger, D. and Ganzert, L. and Zoccarato, L. and Mühldorfer, K. and Sauer, S. and Grossart, H.P. and Greenwood, A.D.
Scientific Reports 9 (1): 9673. 4 July 2019

SCelVis: Powerful explorative single cell data analysis on the desktop and in the cloud.
Obermayer, B. and Holtgrewe, M. and Nieminen, M. and Messerschmidt, C. and Beule, D.
bioRxiv : 713008. 24 July 2019

Quantitative 7T MRI does not detect occult brain damage in neuromyelitis optica.
Pasquier, B. and Borisow, N. and Rasche, L. and Bellmann-Strobl, J. and Ruprecht, K. and Niendorf, T. and Derfuss, T.J. and Wuerfel, J. and Paul, F. and Sinnecker, T.
Neurology Neuroimmunology & Neuroinflammation 6 (3): e541. May 2019

Homozygosity for the c.428delG variant in KIAA0586 in a healthy individual: implications for molecular testing in patients with Joubert syndrome.
Pauli, S. and Altmüller, J. and Schröder, S. and Ohlenbusch, A. and Dreha-Kulaczewski, S. and Bergmann, C. and Nürnberg, P. and Thiele, H. and Li, Y. and Wollnik, B. and Brockmann, K.
Journal of Medical Genetics 56 (4): 261-264. April 2019

Small-molecule lysophosphatidic acid receptor 5 (LPAR5) antagonists: versatile pharmacological tools to regulate inflammatory signaling in BV-2 microglia cells.
Plastira, I. and Joshi, L. and Bernhart, E. and Schoene, J. and Specker, E. and Nazare, M. and Sattler, W.
Frontiers in Cellular Neuroscience 13 : 531. 29 December 2019

Biallelic mutation of human SLC6A6 encoding the taurine transporter TAUT is linked to early retinal degeneration.
Preising, M.N. and Görg, B. and Friedburg, C. and Qvartskhava, N. and Budde, B.S. and Bonus, M. and Toliat, M.R. and Pfleger, C. and Altmüller, J. and Herebian, D. and Beyer, M. and Zöllner, H.J. and Wittsack, H.J. and Schaper, J. and Klee, D. and Zechner, U. and Nürnberg, P. and Schipper, J. and Schnitzler, A. and Gohlke, H. and Lorenz, B. and Häussinger, D. and Bolz, H.J.
FASEB Journal 33 (10): 11507-11527. October 2019

Toward (19)F magnetic resonance thermometry: spin-lattice and spin-spin-relaxation times and temperature dependence of fluorinated drugs at 9.4 T.
Prinz, C. and Delgado, P.R. and Eigentler, T.W. and Starke, L. and Niendorf, T. and Waiczies, S.
Magnetic Resonance Materials in Physics Biology and Medicine 32 (1): 51-61. February 2019

Functional annotation of human long non-coding RNAs via molecular phenotyping.
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bioRxiv : 700864. 18 July 2019

Next-generation sequencing of 32 genes associated with hereditary aortopathies and related disorders of connective tissue in a cohort of 199 patients.
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Genetics in Medicine 21 (8): 1832-1841. August 2019

Porous medium 3D flow simulation of contrast media washout in cardiac MRI reflects myocardial injury.
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Magnetic Resonance in Medicine 82 (2): 775-785. August 2019

Clonality of circulating tumor cells in breast cancer brain metastasis patients.
Riebensahm, C. and Joosse, S.A. and Mohme, M. and Hanssen, A. and Matschke, J. and Goy, Y. and Witzel, I. and Lamszus, K. and Kropidlowski, J. and Petersen, C. and Kolb-Kokocinski, A. and Sauer, S. and Borgmann, K. and Glatzel, M. and Müller, V. and Westphal, M. and Riethdorf, S. and Pantel, K. and Wikman, H.
Breast Cancer Research and Treatment 21 (1): 101. 3 September 2019

Non-canonical HIF-1 stabilization contributes to intestinal tumorigenesis.
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Oncogene 38 (28): 5670-5685. 11 July 2019

Evaluation of colorectal cancer subtypes and cell lines using deep learning.
Ronen, J. and Hayat, S. and Akalin, A.
Life Science Alliance 2 (6): 201900517. December 2019

Novel calcineurin A (PPP3CA) variant associated with epilepsy, constitutive enzyme activation and downregulation of protein expression.
Rydzanicz, M. and Wachowska, M. and Cook, E.C. and Lisowski, P. and Kuźniewska, B. and Szymańska, K. and Diecke, S. and Prigione, A. and Szczałuba, K. and Szybińska, A. and Koppolu, A. and Murcia Pienkowski, V. and Kosińska, J. and Wiweger, M. and Kostrzewa, G. and Brzozowska, M. and Domańska-Pakieła, D. and Jurkiewicz, E. and Stawiński, P. and Gromadka, A. and Zielenkiewicz, P. and Demkow, U. and Dziembowska, M. and Kuźnicki, J. and Creamer, T.P. and Płoski, R.
European Journal of Human Genetics 27 (1): 61-69. January 2019

A pharmacological master key mechanism that unlocks the selectivity filter gate in K(+) channels.
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Science 363 (6429): 875-880. 22 February 2019

Deregulated splicing is a major mechanism of RNA-induced toxicity in Huntington's disease.
Schilling, J. and Broemer, M. and Atanassov, I. and Duernberger, Y. and Vorberg, I. and Dieterich, C. and Dagane, A. and Dittmar, G. and Wanker, E. and van Roon-Mom, W. and Winter, J. and Krauß, S.
Journal of Molecular Biology 431 (9): 1869-1877. 19 April 2019

Probing 2H-indazoles as template for SGK1, Tie2 and SRC kinase inhibitors.
Schoene, J. and Gazzi, T. and Lindemann, P. and Christmann, M. and Volkamer, A. and Nazaré, M.
ChemMedChem 14 (16): 1514-1527. 20 August 2019

Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage.
Schulz, A. and Müller, N.V. and van de Lest, N.A. and Eisenreich, A. and Schmidbauer, M. and Barysenka, A. and Purfürst, B. and Sporbert, A. and Lorenzen, T. and Meyer, A.M. and Herlan, L. and Witten, A. and Rühle, F. and Zhou, W. and de Heer, E. and Scharpfenecker, M. and Panáková, D. and Stoll, M. and Kreutz, R.
eLife 8 : e42068. 22 March 2019

SigsPack, a package for cancer mutational signatures.
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BMC Bioinformatics 20 (1): 450. 2 September 2019

A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage.
Sharir, A. and Marangoni, P. and Zilionis, R. and Wan, M. and Wald, T. and Hu, J.K. and Kawaguchi, K. and Castillo-Azofeifa, D. and Epstein, L. and Harrington, K. and Pagella, P. and Mitsiadis, T. and Siebel, C.W. and Klein, A.M. and Klein, O.D.
Nature Cell Biology 21 (9): 1102-1112. September 2019

Insights into IgM-mediated complement activation based on in situ structures of IgM-C1-C4b.
Sharp, T.H. and Boyle, A.L. and Diebolder, C.A. and Kros, A. and Koster, A. and Gros, P.
Proceedings of the National Academy of Sciences of the United States of America 116 (24): 11900-11905. 11 June 2019

R-spondin-3 induces secretory, antimicrobial Lgr5(+) cells in the stomach.
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Nature Cell Biology 21 (7): 812-823. July 2019

Chronic CD30-signaling in B cells results in lymphomagenesis by driving the expansion of plasmablasts and B1 cells.
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Blood 133 (24): 2597-2609. 13 June 2019

Scalable workflows and reproducible data analysis for genomics.
Strozzi, F. and Janssen, R. and Wurmus, R. and Crusoe, M.R. and Githinji, G. and Di Tommaso, P. and Belhachemi, D. and Möller, S. and Smant, G. and de Ligt, J. and Prins, P.
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Cardiac magnetic resonance imaging at 7 Tesla.
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Journal of Visualized Experiments (143): e55853. 6 January 2019

A semisynthetic peptide-metalloporphyrin responsive matrix for artificial photosynthesis.
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ChemPhotoChem 3 (8): 630-635. August 2019

Fast cross correlation for limited angle tomographic data.
Sánchez, R.M. and Mester, R. and Kudryashev, M.
Lecture Notes in Computer Science 11482 : 415-426. 2019

The lipid head group is the key element for substrate recognition by the P4 ATPase ALA2: a phosphatidylserine flippase.
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Biochemical Journal 476 (5): 783-794. 6 March 2019

Enhancement of precise gene editing by the association of Cas9 with homologous recombination factors.
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Frontiers in Genetics 10 : 365. 30 April 2019

Efficient CRISPR/Cas9-mediated gene knockin in mouse hematopoietic stem and progenitor cells.
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Cell Reports 28 (13): 3510-3522. 24 September 2019

UbiFast, a rapid and deep-scale ubiquitylation profiling approach for biology and translational research.
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bioRxiv : 785378. 27 September 2019

Identification of TMEM206 proteins as pore of PAORAC/ASOR acid-sensitive chloride channels.
Ullrich, F. and Blin, S. and Lazarow, K. and Daubitz, T. and von Kries, J.P. and Jentsch, T.J.
eLife 8 : e49187. 18 July 2019

Identification of TMEM206 proteins as pore of ASOR acid-sensitive chloride channels.
Ullrich, F. and Blin, S. and Lazarow, K. and Daubitz, T. and von Kries, J.P. and Jentsch, T.J.
bioRxiv : 667600. 11 June 2019

Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities.
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Cell 177 (4): 1035-1049. 2 May 2019

Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart.
Vidal, R. and Wagner, J.U.G. and Braeuning, C. and Fischer, C. and Patrick, R. and Tombor, L. and Muhly-Reinholz, M. and John, D. and Kliem, M. and Conrad, T. and Guimarães-Camboa, N. and Harvey, R. and Dimmeler, S. and Sauer, S.
JCI Insight 4 (22): e131092. 14 November 2019

The mutational landscape of Burkitt-like lymphoma with 11q aberration is distinct from that of Burkitt lymphoma.
Wagener, R. and Seufert, J. and Raimondi, F. and Bens, S. and Kleinheinz, K. and Nagel, I. and Altmüller, J. and Thiele, H. and Hübschmann, D. and Kohler, C.W. and Nürnberg, P. and Au-Yeung, R. and Burkhardt, B. and Horn, H. and Leoncini, L. and Jaffe, E.S. and Ott, G. and Rymkiewicz, G. and Schlesner, M. and Russell, R.B. and Klapper, W. and Siebert, R.
Blood 133 (9): 962-966. 28 February 2019

Fluorine-19 MRI at 21.1 T: enhanced spin-lattice relaxation of perfluoro-15-crown-5-ether and sensitivity as demonstrated in ex vivo murine neuroinflammation.
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Magnetic Resonance Materials in Physics Biology and Medicine 32 (1): 37-49. February 2019

Special issue on fluorine-19 magnetic resonance: technical solutions, research promises and frontier applications.
Waiczies, S. and Srinivas, M. and Flögel, U. and Boehm-Sturm, P. and Niendorf, T.
Magnetic Resonance Materials in Physics Biology and Medicine 32 (1): 1-3. February 2019

De novo mutations in FOXJ1 result in a motile ciliopathy with hydrocephalus and randomization of left/right body asymmetry.
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American Journal of Human Genetics 105 (5): 1030-1039. 7 November 2019

Long and repeat-rich intronic sequences favor circular RNA formation under conditions of reduced spliceosome activity.
Wang, M. and Hou, J. and Müller-McNicoll, M. and Chen, W. and Schuman, E.M.
iScience 20 : 237-247. 25 October 2019

Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus.
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Nature Communications 10 (1): 5009. 1 November 2019

A novel allele for inducible Cre expression in germinal center B cells.
Weber, T. and Seagal, J. and Winkler, W. and Wirtz, T. and Chu, V.T. and Rajewsky, K.
European Journal of Immunology 49 (1): 192-194. January 2019

Germline loss-of-function variants in the BARD1 gene are associated with early-onset familial breast cancer but not ovarian cancer.
Weber-Lassalle, N. and Borde, J. and Weber-Lassalle, K. and Horváth, J. and Niederacher, D. and Arnold, N. and Kaulfuß, S. and Ernst, C. and Paul, V.G. and Honisch, E. and Klaschik, K. and Volk, A.E. and Kubisch, C. and Rapp, S. and Lichey, N. and Altmüller, J. and Lepkes, L. and Pohl-Rescigno, E. and Thiele, H. and Nürnberg, P. and Larsen, M. and Richters, L. and Rhiem, K. and Wappenschmidt, B. and Engel, C. and Meindl, A. and Schmutzler, R.K. and Hahnen, E. and Hauke, J.
Breast Cancer Research 21 (1): 55. 29 April 2019

Splicing factor Rbm10 facilitates heterochromatin assembly in fission yeast.
Weigt, M. and Gao, Q. and Ban, H. and He, H. and Mastrobuoni, G. and Kempa, S. and Chen, W. and Li, F.
bioRxiv : 518936. 11 January 2019

Global identification of functional microRNA-mRNA interactions in Drosophila.
Wessels, H.H. and Lebedeva, S. and Hirsekorn, A. and Wurmus, R. and Akalin, A. and Mukherjee, N. and Ohler, U.
Nature Communications 10 (1): 1626. 9 April 2019

Integrative functional genomics decodes herpes simplex virus 1.
Whisnant, A.W. and Jürges, C.S. and Hennig, T. and Wyler, E. and Prusty, B. and Rutkowski, A.J. and L’hernault, A. and Göbel, M. and Döring, K. and Menegatti, J. and Antrobus, R. and Matheson, N.J. and Künzig, F.W.H. and Mastrobuoni, G. and Bielow, C. and Kempa, S. and Chunguang, L. and Dandekar, T. and Zimmer, R. and Landthaler, M. and Grässer, F. and Lehner, P.J. and Friedel, C.C. and Erhard, F. and Dölken, L.
bioRxiv : 603654. 9 April 2019

The cell adhesion protein CAR is a negative regulator of synaptic transmission.
Wrackmeyer, U. and Kaldrack, J. and Jüttner, R. and Pannasch, U. and Gimber, N. and Freiberg, F. and Purfürst, B. and Kainmueller, D. and Schmitz, D. and Haucke, V. and Rathjen, F.G. and Gotthardt, M.
Scientific Reports 9 (1): 6768. 1 May 2019

HOT or not: examining the basis of high-occupancy target regions.
Wreczycka, K. and Franke, V. and Uyar, B. and Wurmus, R. and Bulut, S. and Tursun, B. and Akalin, A.
Nucleic Acids Research : gkz460. 20 June 2019

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program.
Wyler, E. and Franke, V. and Menegatti, J. and Kocks, C. and Boltengagen, A. and Praktiknjo, S. and Walch-Rückheim, B. and Bosse, J. and Rajewsky, N. and Grässer, F. and Akalin, A. and Landthaler, M.
Nature Communications 10 (1): 4878. 25 October 2019

Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program.
Wyler, E. and Franke, V. and Menegatti, J. and Kocks, C. and Boltengagen, A. and Praktiknjo, S. and Walch-Rückheim, B. and Rajewsky, N. and Grässer, F. and Akalin, A. and Landthaler, M.
bioRxiv : 566992. 4 March 2019

(In situ) conformational changes of the Escherichia coli serine chemoreceptor in different signaling states.
Yang, W. and Cassidy, C.K. and Ames, P. and Diebolder, C.A. and Schulten, K. and Luthey-Schulten, Z. and Parkinson, J.S. and Briegel, A.
mBio 10 (4): e00973. 2 July 2019

Efficient gene editing of human induced pluripotent stem cells using CRISPR/Cas9.
Yumlu, S. and Bashir, S. and Stumm, J. and Kühn, R.
Methods in Molecular Biology 1961 : 137-151. 2019

TMT labeling for the masses: a robust and cost-efficient, in-solution labeling approach.
Zecha, J. and Satpathy, S. and Kanashova, T. and Avanessian, S.C. and Kane, M.H. and Clauser, K.R. and Mertins, P. and Carr, S.A. and Kuster, B.
Molecular & Cellular Proteomics 18 (7): 1468-1478. 1 July 2019

Rapid synthesis of γ-halide/pseudohalide-substituted cyanine sensors with programmed generation of singlet oxygen.
Zhang, Q. and Xu, S. and Lai, F. and Wang, Y. and Zhang, N. and Nazare, M. and Hu, H.Y.
Organic Letters 21 (7): 2121-2125. 5 April 2019

Endothelial PKA activity regulates angiogenesis by limiting autophagy through phosphorylation of ATG16L1.
Zhao, X. and Nedvetsky, P. and Stanchi, F. and Vion, A.C. and Popp, O. and Zühlke, K. and Dittmar, G. and Klussmann, E. and Gerhardt, H.
eLife 8 : e46380. 3 October 2019

Endothelial PKA targets ATG16L1 to regulate angiogenesis by limiting autophagy.
Zhao, X. and Nedvetsky, P. and Vion, A.C. and Popp, O. and Zühlke, K. and Dittmar, G. and Klussmann, E. and Gerhardt, H.
bioRxiv : 573683. 12 March 2019

The Wnt-driven Mll1 epigenome regulates salivary gland and head and neck cancer.
Zhu, Q. and Fang, L. and Heuberger, J. and Kranz, A. and Schipper, J. and Scheckenbach, K. and Oliveira Vidal, R. and Sunaga-Franze, D.Y. and Müller, M. and Wulf-Goldenberg, A. and Sauer, S. and Birchmeier, W.
Cell Reports 26 (2): 415-428. 8 January 2019

Diffusion-weighted renal MRI at 9.4 Tesla using RARE to improve anatomical integrity.
dos Santos Periquito, J. and Paul, K. and Huelnhagen, T. and Ku, M.C. and Ji, Y. and Cantow, K. and Gladytz, T. and Grosenick, D. and Flemming, B. and Seeliger, E. and Waiczies, S. and Niendorf, T. and Pohlmann, A.
Scientific Reports 9 (1): 19723. 23 December 2019

The translational landscape of the human heart.
van Heesch, S. and Witte, F. and Schneider-Lunitz, V. and Schulz, J.F. and Adami, E. and Faber, A. and Kirchner, M. and Maatz, H. and Blachut, S. and Sandmann, C.L. and Kanda, M. and Worth, C.L. and Schafer, S. and Calviello, L. and Merriott, R. and Patone, G. and Hummel, O. and Wyler, E. and Obermayer, B. and Mücke, M. and Lindberg, E.L. and Trnka, F. and Memczak, S. and Schilling, M. and Felkin, L.E. and Barton, P.J.R. and Quaife, N.M. and Vanezis, K. and Diecke, S. and Mukai, M. and Mah, N. and Oh, S.J. and Kurtz, A. and Schramm, C. and Schwinge, D. and Sebode, M. and Harakalova, M. and Asselbergs, F.W. and Vink, A. and de Weger, R.A. and Viswanathan, S. and Widjaja, A.A. and Gärtner-Rommel, A. and Milting, H. and Dos Remedios, C. and Knosalla, C. and Mertins, P. and Landthaler, M. and Vingron, M. and Linke, W.A. and Seidman, J.G. and Seidman, C.E. and Rajewsky, N. and Ohler, U. and Cook, S.A. and Hubner, N.
Cell 178 (1): 242-260. 27 June 2019

Autocrine LTA signaling drives NF-κB and JAK-STAT activity and myeloid gene expression in Hodgkin lymphoma.
von Hoff, L. and Kärgel, E. and Franke, V. and McShane, E. and Schulz-Beiss, K.W. and Patone, G. and Schleussner, N. and Kolesnichenko, M. and Hübner, N. and Daumke, O. and Selbach, M. and Akalin, A. and Mathas, S. and Scheidereit, C.
Blood 133 (13): 1489-1494. 28 March 2019

2018

A mechanistic classification of clinical phenotypes in neuroblastoma.
Ackermann, S. and Cartolano, M. and Hero, B. and Welte, A. and Kahlert, Y. and Roderwieser, A. and Bartenhagen, C. and Walter, E. and Gecht, J. and Kerschke, L. and Volland, R. and Menon, R. and Heuckmann, J.M. and Gartlgruber, M. and Hartlieb, S. and Henrich, K.O. and Okonechnikov, K. and Altmüller, J. and Nürnberg, P. and Lefever, S. and de Wilde, B. and Sand, F. and Ikram, F. and Rosswog, C. and Fischer, J. and Theissen, J. and Hertwig, F. and Singhi, A.D. and Simon, T. and Vogel, W. and Perner, S. and Krug, B. and Schmidt, M. and Rahmann, S. and Achter, V. and Lang, U. and Vokuhl, C. and Ortmann, M. and Büttner, R. and Eggert, A. and Speleman, F. and O'Sullivan, R.J. and Thomas, R.K. and Berthold, F. and Vandesompele, J. and Schramm, A. and Westermann, F. and Schulte, J.H. and Peifer, M. and Fischer, M.
Science 362 (6419): 1165-1170. 7 December 2018

The immunoproteasome-specific inhibitor ONX 0914 reverses susceptibility to acute viral myocarditis.
Althof, N. and Goetzke, C.C. and Kespohl, M. and Voss, K. and Heuser, A. and Pinkert, S. and Kaya, Z. and Klingel, K. and Beling, A.
EMBO Molecular Medicine 10 (2): 200-218. 1 February 2018

Proteomics, post-translational modifications, and integrative analyses reveal molecular heterogeneity within medulloblastoma subgroups.
Archer, T.C. and Ehrenberger, T. and Mundt, F. and Gold, M.P. and Krug, K. and Mah, C.K. and Mahoney, E.L. and Daniel, C.J. and LeNail, A. and Ramamoorthy, D. and Mertins, P. and Mani, D.R. and Zhang, H. and Gillette, M.A. and Clauser, K. and Noble, M. and Tang, L.C. and Pierre-François, J. and Silterra, J. and Jensen, J. and Tamayo, P. and Korshunov, A. and Pfister, S.M. and Kool, M. and Northcott, P.A. and Sears, R.C. and Lipton, J.O. and Carr, S.A. and Mesirov, J.P. and Pomeroy, S.L. and Fraenkel, E.
Cancer Cell 34 (3): 396-410. 10 September 2018

Allosteric inhibition of a mammalian lectin.
Aretz, J. and Anumala, U.R. and Fuchsberger, F.F. and Molavi, N. and Ziebart, N. and Zhang, H. and Nazaré, M. and Rademacher, C.
Journal of the American Chemical Society 140 (44): 14915-14925. 7 November 2018

A Canadian genome-wide association study and meta-analysis confirm HLA as a risk factor for peanut allergy independent of asthma.
Asai, Y. and Eslami, A. and van Ginkel, C.D. and Akhabir, L. and Wan, M. and Yin, D. and Ellis, G. and Ben-Shoshan, M. and Marenholz, I. and Martino, D. and Ferreira, M.A. and Allen, K. and Mazer, B. and de Groot, H. and de Jong, N.W. and Gerth van Wijk, R. and Dubois, A.E.J. and Grosche, S. and Ashley, S. and Rüschendorf, F. and Kalb, B. and Beyer, K. and Nöthen, M.M. and Lee, Y.A. and Chin, R. and Cheuk, S. and Hoffman, J. and Jorgensen, E. and Witte, J.S. and Melles, R.B. and Hong, X. and Wang, X. and Hui, J. and Musk, A.W.B. and Hunter, M. and James, A.L. and Koppelman, G.H. and Sandford, A.J. and Clarke, A.E. and Daley, D.
Journal of Allergy and Clinical Immunology 141 (4): 1513-1516. April 2018

Chronic overexpression of bradykinin in kidney causes polyuria and cardiac hypertrophy.
Barros, C.C. and Schadock, I. and Sihn, G. and Rother, F. and Xu, P. and Popova, E. and Lapidus, I. and Plehm, R. and Heuser, A. and Todiras, M. and Bachmann, S. and Alenina, N. and Araujo, R.C. and Pesquero, J.B. and Bader, M.
Frontiers in Medicine 5 : 338. December 2018

7 Tesla MRI of Balo's concentric sclerosis versus multiple sclerosis lesions.
Behrens, J.R. and Wanner, J. and Kuchling, J. and Ostendorf, L. and Harms, L. and Ruprecht, K. and Niendorf, T. and Jarius, S. and Wildemann, B. and Gieß, R.M. and Scheel, M. and Bellmann-Strobl, J. and Wuerfel, J. and Paul, F. and Sinnecker, T.
Annals of Clinical and Translational Neurology 5 (8): 900-912. August 2018

Novel strategy for the preparation of 3-perfluoroalkylated-2 H-indazole derivatives.
Bel Abed, H. and Weißing, N. and Schoene, J. and Paulus, J. and Sewald, N. and Nazaré, M.
Tetrahedron Letters 59 (19): 1813-1815. 9 May 2018

Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer.
Berndt, N. and Egners, A. and Mastrobuoni, G. and Vvedenskaya, O. and Fragoulis, A. and Dugourd, A. and Bulik, S. and Pietzke, M. and Bielow, C. and van Gassel, R. and Olde Damink, S. and Erdem, M. and Saez-Rodriguez, J. and Holzhütter, H.G. and Kempa, S. and Cramer, T.
bioRxiv : 275040. 5 March 2018

Identification and ranking of recurrent neo-epitopes in cancer.
Blanc, E. and Holtgrewe, M. and Dhamodaran, A. and Messerschmidt, C. and Willimsky, G. and Blankenstein, T. and Beule, D.
bioRxiv : 389437. 10 August 2018

Exon junction complexes suppress spurious splice sites to safeguard transcriptome integrity.
Boehm, V. and Britto-Borges, T. and Steckelberg, A.L. and Singh, K.K. and Gerbracht, J.V. and Gueney, E. and Blazquez, L. and Altmüller, J. and Dieterich, C. and Gehring, N.H.
Molecular Cell 72 (3): 482-495. 1 November 2018

Gadolinium deposition in the brain after contrast-enhanced MRI: are the data valid?
Boyken, J. and Niendorf, T. and Flemming, B. and Seeliger, E.
Radiology 288 (2): 630-632. 19 June 2018

Mutations in multiple components of the nuclear pore complex cause nephrotic syndrome.
Braun, D.A. and Lovric, S. and Schapiro, D. and Schneider, R. and Marquez, J. and Asif, M. and Hussain, M.S. and Daga, A. and Widmeier, E. and Rao, J. and Ashraf, S. and Tan, W. and Lusk, C.P. and Kolb, A. and Jobst-Schwan, T. and Schmidt, J.M. and Hoogstraten, C.A. and Eddy, K. and Kitzler, T.M. and Shril, S. and Moawia, A. and Schrage, K. and Khayyat, A.I.A. and Lawson, J.A. and Gee, H.Y. and Warejko, J.K. and Hermle, T. and Majmundar, A.J. and Hugo, H. and Budde, B. and Motameny, S. and Altmüller, J. and Noegel, A. A. and Fathy, H.M. and Gale, D.P. and Waseem, S.S. and Khan, A. and Kerecuk, L. and Hashmi, S. and Mohebbi, N. and Ettenger, R. and Serdaroğlu, E. and Alhasan, K.A. and Hashem, M. and Goncalves, S. and Ariceta, G. and Ubetagoyena, M. and Antonin, W. and Baig, S.M. and Alkuraya, F.S. and Shen, Q. and Xu, H. and Antignac, C. and Lifton, R.P. and Mane, S. and Nürnberg, P. and Khokha, M.K. and Hildebrandt, F.
Journal of Clinical Investigation 128 (10): 4313-4328. 1 October 2018

Interpretation of functional renal MRI findings : where physiology and imaging sciences need to talk across domains.
Brix, S. and Cantow, K. and Flemming, B. and Pohlmann, A. and Niendorf, T. and Seeliger, E.
Journal of Magnetic Resonance Imaging 47 (4): 1140-1141. April 2018

Mutations in plasmalemma vesicle-associated protein cause severe syndromic protein-losing enteropathy.
Broekaert, I.J. and Becker, K. and Gottschalk, I. and Körber, F. and Dötsch, J. and Thiele, H. and Altmüller, J. and Nürnberg, P. and Hünseler, C. and Cirak, S.
Journal of Medical Genetics 55 (9): 637-640. September 2018

The C/EBPβ LIP isoform rescues loss of C/EBPβ function in the mouse.
Bégay, V. and Baumeier, C. and Zimmermann, K. and Heuser, A. and Leutz, A.
Scientific Reports 8 (1): 8417. 30 May 2018

SPECT/MRI INSERT compatibility: assessment, solutions, and design guidelines.
Carminati, M. and Montagnani, G.L. and Occhipinti, M. and Kuehne, A. and Niendorf, T. and Nagy, K. and Nagy, A. and Czeller, M. and Fiorini, C.
IEEE Transactions on Radiation and Plasma Medical Sciences 2 (4): 369-379. July 2018

Adaptive and reversible resistance to Kras inhibition in pancreatic cancer cells.
Chen, P.Y. and Muzumdar, M.D. and Dorans, K.J. and Robbins, R.A. and Bhutkar, A. and Del Rosario, A.M. and Mertins, P. and Qiao, J. and Schaefer, C. and Gertler, F.B. and Carr, S.A. and Jacks, T.
Cancer Research 78 (4): 985-1002. 15 February 2018

Pervasive, coordinated protein-level changes driven by transcript isoform switching during meiosis.
Cheng, Z. and Otto, G.M. and Powers, E.N. and Keskin, A. and Mertins, P. and Carr, S.A. and Jovanovic, M. and Brar, G.A.
Cell 172 (5): 910-923. 22 February 2018

MetExplore: collaborative edition and exploration of metabolic networks.
Cottret, L. and Frainay, C. and Chazalviel, M. and Cabanettes, F. and Gloaguen, Y. and Camenen, E. and Merlet, B. and Heux, S. and Portais, J.C. and Poupin, N. and Vinson, F. and Jourdan, F.
Nucleic Acids Research 46 (W1): W495-W502. 2 July 2018

Acquisition and reconstruction of 4D surfaces of axolotl embryos with the flipping stage robotic microscope.
Crawford-Young, S.J. and Dittapongpitch, S. and Gordon, R. and Harrington, K.I.S.
Biosystems 173 : 214-220. November 2018

Artificial gene regulatory networks-a review.
Cussat-Blanc, S. and Harrington, K. and Banzhaf, W.
Artificial Life 24 (4): 296-328. 2018

The transcription factor STAT6 mediates direct repression of inflammatory enhancers and limits activation of alternatively polarized macrophages.
Czimmerer, Z. and Daniel, B. and Horvath, A. and Rückerl, D. and Nagy, G. and Kiss, M. and Peloquin, M. and Budai, M.M. and Cuaranta-Monroy, I. and Simandi, Z. and Steiner, L. and Nagy, B. and Poliska, S. and Banko, C. and Bacso, Z. and Schulman, I.G. and Sauer, S. and Deleuze, J.F. and Allen, J.E. and Benko, S. and Nagy, L.
Immunity 48 (1): 75-90. 16 January 2018

Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
Czimmerer, Z. and Nagy, Z.S. and Nagy, G. and Horvath, A. and Silye-Cseh, T. and Kriston, A. and Jonas, D. and Sauer, S. and Steiner, L. and Daniel, B. and Deleuze, J.F. and Nagy, L.
Molecular and Cellular Endocrinology 471 : 63-74. 15 August 2018

The nuclear receptor PPARγ controls progressive macrophage polarization as a ligand-insensitive epigenomic ratchet of transcriptional memory.
Daniel, B. and Nagy, G. and Czimmerer, Z. and Horvath, A. and Hammers, D.W. and Cuaranta-Monroy, I. and Poliska, S. and Tzerpos, P. and Kolostyak, Z. and Hays, T.T. and Patsalos, A. and Houtman, R. and Sauer, S. and Francois-Deleuze, J. and Rastinejad, F. and Balint, B.L. and Sweeney, H.L. and Nagy, L.
Immunity 49 (4): 615-626. 16 October 2018

The IL-4/STAT6/PPARγ signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages.
Daniel, B. and Nagy, G. and Horvath, A. and Czimmerer, Z. and Cuaranta-Monroy, I. and Poliska, S. and Hays, T.T. and Sauer, S. and Francois-Deleuze, J. and Nagy, L.
Nucleic Acids Research 46 (9): 4425-4439. 18 May 2018

Nuclear organization in the spinal cord depends on motor neuron lamination orchestrated by catenin and afadin function.
Dewitz, C. and Pimpinella, S. and Hackel, P. and Akalin, A. and Jessell, T.M. and Zampieri, N.
Cell Reports 22 (7): 1681-1694. 13 February 2018

On the relation between filament density, force generation and protrusion rate in mesenchymal cell motility.
Dolati, S. and Kage, F. and Mueller, J. and Müsken, M. and Kirchner, M. and Dittmar, G. and Sixt, M. and Rottner, K. and Falcke, M.
Molecular Biology of the Cell 29 (22): 2674-2686. 1 November 2018

S-palmitoylation is required for the control of growth cone morphology of DRG neurons by CNP-induced cGMP signaling.
Dumoulin, A. and Dagane, A. and Dittmar, G. and Rathjen, F.G.
Frontiers in Molecular Neuroscience 11 : 345. 24 September 2018

In vivo imaging of MMP-13 activity using a specific polymer-FRET peptide conjugate detects early osteoarthritis and inhibitor efficacy.
Duro-Castano, A. and Lim, N.H. and Tranchant, I. and Amoura, M. and Beau, F. and Wieland, H. and Kingler, O. and Herrmann, M. and Nazaré, M. and Plettenburg, O. and Dive, V. and Vicent, M.J. and Nagase, H.
Advanced Functional Materials 28 (37): 1802738. 12 September 2018

Brain iron accumulation in Wilson's disease: a longitudinal imaging case study during anticopper treatment using 7.0T MRI and transcranial sonography.
Dusek, P. and Skoloudik, D. and Maskova, J. and Huelnhagen, T. and Bruha, R. and Zahorakova, D. and Niendorf, T. and Ruzicka, E. and Schneider, S.A. and Wuerfel, J.
Journal of Magnetic Resonance Imaging 47 (1): 282-285. January 2018

Silent witness: dual-species transcriptomics reveals epithelial immunological quiescence to helminth larval encounter and fostered larval development.
Ebner, F. and Kuhring, M. and Radonic, A. and Midha, A. and Renard, B.Y. and Hartmann, S.
Frontiers in Immunology 9 : 1868. 15 August 2018

Clathrin coat controls synaptic vesicle acidification by blocking vacuolar ATPase activity.
Farsi, Z. and Gowrisankaran, S. and Krunic, M. and Rammner, B. and Woehler, A. and Lafer, E.M. and Mim, C. and Jahn, R. and Milosevic, I.
eLife 7 : e32569. 13 April 2018

Dominant SCN2A mutation causes familial episodic ataxia and impairment of speech development.
Fazeli, W. and Becker, K. and Herkenrath, P. and Düchting, C. and Körber, F. and Landgraf, P. and Nürnberg, P. and Altmüller, J. and Thiele, H. and Koy, A. and Liebau, M.C. and Simon, T. and Dötsch, J. and Cirak, S.
Neuropediatrics 49 (6): 379-384. December 2018

Profound functional and molecular diversity of mitochondria revealed by cell type-specific profiling in vivo.
Fecher, C. and Trovò, L. and Müller, S.A. and Snaidero, N. and Wettmarshausen, J. and Heink, S. and Ortiz, O. and Wagner, I. and Kühn, R. and Hartmann, J. and Karl, R.M. and Konnerth, A. and Korn, T. and Wurst, W. and Merkler, D. and Lichtenthaler, S.L. and Perocchi, F. and Misgeld, T.
bioRxiv : 403774. 29 August 2018

Alterations of mTOR signaling impact metabolic stress resistance in colorectal carcinomas with BRAF and KRAS mutations.
Fritsche-Guenther, R. and Zasada, C. and Mastrobuoni, G. and Royla, N. and Rainer, R. and Roßner, F. and Pietzke, M. and Klipp, E. and Sers, C. and Kempa, S.
Scientific Reports 8 (1): 9204. 15 June 2018

Near infrared spectroscopy setup for concurrent spectroscopic, invasive and MRI investigations in rats.
Gladytz, T. and Hoppe, A. and Cantow, K. and Brix, S. and Flemming, B. and Pohlmann, A. and Seeliger, E. and Niendorf, T. and Grosenick, D.
In: Clinical and Translational Biophotonics, 3-6 April 2018, Los Angeles, United States of Amerika. 2018

Desmoglein 2, but not desmocollin 2, protects intestinal epithelia from injury.
Gross, A. and Pack, L.A.P. and Schacht, G.M. and Kant, S. and Ungewiss, H. and Meir, M. and Schlegel, N. and Preisinger, C. and Boor, P. and Guldiken, N. and Krusche, C.A. and Sellge, G. and Trautwein, C. and Waschke, J. and Heuser, A. and Leube, R.E. and Strnad, P.
Mucosal Immunology 11 (6): 1630-1639. 1 November 2018

An eicosanoid protects from statin-induced myopathic changes in primary human cells.
Grunwald, S.A. and Popp, O. and Haafke, S. and Jedraszczak, N. and Grieben, U. and Saar, K. and Patone, G. and Kress, W. and Steinhagen-Thiessen, E. and Dittmar, G. and Spuler, S.
bioRxiv : 271932. 26 February 2018

Transcriptional and translational differences of microglia from male and female brains.
Guneykaya, D. and Ivanov, A. and Perez Hernandez, D. and Haage, V. and Wojtas, B. and Meyer, N. and Maricos, M. and Jordan, P. and Buonfiglioli, A. and Gielniewski, B. and Ochocka, N. and Cömert, C. and Friedrich, C. and Suarez Artiles, L. and Kaminska, B. and Mertins, P. and Beule, D. and Kettenmann, H. and Wolf, S.A.
Cell Reports 24 (10): 2773-2783. 4 September 2018

Faecal microbiota composition associates with abdominal pain in the general population.
Hadizadeh, F. and Bonfiglio, F. and Belheouane, M. and Vallier, M. and Sauer, S. and Bang, C. and Bujanda, L. and Andreasson, A. and Agreus, L. and Engstrand, L. and Talley, N.J. and Rafter, J. and Baines, J.F. and Walter, S. and Franke, A. and D'Amato, M.
Gut 67 (4): 778-779. 8 March 2018

Coinheritance of biallelic SLURP1 and SLC39A4 mutations cause a severe genodermatosis with skin peeling and hair loss all over the body.
Harms, F.L. and Nampoothiri, S. and Kortüm, F. and Thomas, J. and Panicker, V.V. and Alawi, M. and Altmüller, J. and Yesodharan, D. and Kutsche, K.
British Journal of Dermatology 179 (5): 1192-1194. 1 November 2018

FunImageJ: a lisp framework for scientific image processing.
Harrington, K.I.S. and Rueden, C.T. and Eliceiri, K.W.
Bioinformatics 34 (5): 899-900. 1 March 2018

Preserved heart function after left ventricular pressure overload in adult mice subjected to neonatal cardiac hypoplasia.
Heinecke, K. and Heuser, A. and Blaschke, F. and Jux, C. and Thierfelder, L. and Drenckhahn, J.D.
Journal of Developmental Origins of Health and Disease 9 (1): 112-124. February 2018

A virus-encoded type I interferon decoy receptor enables evasion of host immunity through cell-surface binding.
Hernáez, B. and Alonso-Lobo, J.M. and Montanuy, I. and Fischer, C. and Sauer, S. and Sigal, L. and Sevilla, N. and Alcamí, A.
Nature Communications 9 (1): 5440. 21 December 2018

Embryos and embryonic stem cells from the white rhinoceros.
Hildebrandt, T.B. and Hermes, R. and Colleoni, S. and Diecke, S. and Holtze, S. and Renfree, M.B. and Stejskal, J. and Hayashi, K. and Drukker, M. and Loi, P. and Göritz, F. and Lazzari, G. and Galli, C.
Nature Communications 9 (1): 2589. 4 July 2018

Multisite de novo mutations in human offspring after paternal exposure to ionizing radiation.
Holtgrewe, M. and Knaus, A. and Hildebrand, G. and Pantel, J.T. and de los Santos, M.R. and Neveling, K. and Goldmann, J. and Schubach, M. and Jäger, M. and Coutelier, M. and Mundlos, S. and Beule, D. and Sperling, K. and Krawitz, P.M.
Scientific Reports 8 (1): 14611. 2 October 2018

Myocardial effective transverse relaxation time T(2)* is elevated in hypertrophic cardiomyopathy: a 7.0 T magnetic resonance imaging study.
Huelnhagen, T. and Ku, M.C. and Reimann, H.M. and Serradas Duarte, T. and Pohlmann, A. and Flemming, B. and Seeliger, E. and Eichhorn, C. and Ferrari, V.A. and Prothmann, M. and Schulz-Menger, J. and Niendorf, T.
Scientific Reports 8 (1): 3974. 5 March 2018

Quantification of myocardial effective transverse relaxation time with magnetic resonance at 7.0 tesla for a better understanding of myocardial (patho)physiology.
Huelnhagen, T. and Serradas-Duarte, Teresa and Hezel, Fabian and Paul, K. and Niendorf, T.
In: Quantification of Biophysical Parameters in Medical Imaging. Springer, Cham, Switzerland, 343-372. ISBN 978-3-319-65923-7 2018

Proteomic analysis of chemosensory organs in the honey bee parasite Varroa destructor: a comprehensive examination of the potential carriers for semiochemicals.
Iovinella, I. and McAfee, A. and Mastrobuoni, G. and Kempa, S. and Foster, L.J. and Pelosi, P. and Dani, F.R.
bioRxiv : 260539. 7 February 2018

Mechanism suppressing H3K9 trimethylation in pluripotent stem cells and its demise by polyQ-expanded huntingtin mutations.
Irmak, D. and Fatima, A. and Gutiérrez-Garcia, R. and Rinschen, M.M. and Wagle, P. and Altmüller, J. and Arrigoni, L. and Hummel, B. and Klein, C. and Frese, C.K. and Sawarkar, R. and Rada-Iglesias, A. and Vilchez, D.
Human Molecular Genetics 27 (23): 4117-4134. 1 December 2018

Rare gene deletions in genetic generalized and Rolandic epilepsies.
Jabbari, K. and Bobbili, D.R. and Lal, D. and Reinthaler, E.M. and Schubert, J. and Wolking, S. and Sinha, V. and Motameny, S. and Thiele, H. and Kawalia, A. and Altmüller, J. and Toliat, M.R. and Kraaij, R. and van Rooij, J. and Uitterlinden, A.G. and Ikram, M.A. and Zara, F. and Lehesjoki, A.E. and Krause, R. and Zimprich, F. and Sander, T. and Neubauer, B.A. and May, P. and Lerche, H. and Nürnberg, P.
PLoS ONE 13 (8): e0202022. 27 August 2018

Chromatin accessibility is dynamically regulated across C. elegans development and ageing.
Janes, J. and Dong, Y. and Schoof, M. and Serizay, J. and Appert, A. and Cerrato, C. and Woodbury, C. and Chen, R. and Gemma, C. and Huang, N. and Kissiov, D. and Stempor, P. and Steward, A. and Zeiser, E. and Sauer, S. and Ahringer, J.
bioRxiv : 279158. 10 June 2018

High peak and high average radiofrequency power transmit/receive switch for thermal magnetic resonance.
Ji, Y. and Hoffmann, W. and Pham, M. and Dunn, A.E. and Han, H. and Özerdem, C. and Waiczies, H. and Rohloff, M. and Endemann, B. and Boyer, C. and Lim, M. and Niendorf, T. and Winter, L.
Magnetic Resonance in Medicine 80 (5): 2246-2255. November 2018

Chromatin accessibility dynamics across C. elegans development and ageing.
Jänes, J. and Dong, Y. and Schoof, M. and Serizay, J. and Appert, A. and Cerrato, C. and Woodbury, C. and Chen, R. and Gemma, C. and Huang, N. and Kissiov, D. and Stempor, P. and Steward, A. and Zeiser, E. and Sauer, S. and Ahringer, J.
eLife 7 : e37344. 26 October 2018

PPM1D truncating mutations confer resistance to chemotherapy and sensitivity to PPM1D inhibition in hematopoietic cells.
Kahn, J.D. and Miller, P.G. and Silver, A.J. and Sellar, R.S. and Bhatt, S. and Gibson, C. and McConkey, M. and Adams, D. and Mar, B. and Mertins, P. and Fereshetian, S. and Krug, K. and Zhu, H. and Letai, A. and Carr, S.A. and Doench, J. and Jaiswal, S. and Ebert, B.L.
Blood 132 (11): 1095-1105. 13 September 2018

OR2H2 regulates the differentiation of human myoblast cells by its ligand aldehyde 13-13.
Kalbe, B. and Osterloh, M. and