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Deciphering the impact of genomic variation on function.

Nature 633 (8028): 47-57. 5 September 2024

Transcript-specific enrichment enables profiling of rare cell states via single-cell RNA sequencing.
Abay, T., Stickels, R.R. ORCID: https://orcid.org/0000-0003-4326-4084, Takizawa, M.T., Nalbant, B.N., Hsieh, Y.H. ORCID: https://orcid.org/0000-0003-3037-8728, Hwang, S., Snopkowski, C., Yu, K.K.H. ORCID: https://orcid.org/0000-0002-2394-4990, Abou-Mrad, Z. ORCID: https://orcid.org/0000-0001-6387-8396, Tabar, V. ORCID: https://orcid.org/0000-0002-1284-1670, Howitt, B.E ORCID: https://orcid.org/0000-0002-0309-6680, Ludwig, L.S. ORCID: https://orcid.org/0000-0002-2916-2164, Chaligné, R. ORCID: https://orcid.org/0000-0003-4332-3291, Satpathy, A.T ORCID: https://orcid.org/0000-0002-5167-537X and Lareau, C.A. ORCID: https://orcid.org/0000-0003-4179-4807
Nature Genetics 57 (2): 451-460. February 2025

Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
Abbosh, C., Frankell, A.M., Harrison, T., Kisistok, J., Garnett, A., Johnson, L., Veeriah, S., Moreau, M., Chesh, A., Chaunzwa, T.L., Weiss, J., Schroeder, M.R., Ward, S., Grigoriadis, K., Shahpurwalla, A., Litchfield, K., Puttick, C., Biswas, D., Karasaki, T., Black, J.R.M., Martínez-Ruiz, C., Bakir, M.A.l., Pich, O., Watkins, T.B.K., Lim, E.L., Huebner, A., Moore, D.A., Godin-Heymann, N., L'Hernault, A., Bye, H., Odell, A., Roberts, P., Gomes, F., Patel, A.J., Manzano, E., Hiley, C.T., Carey, N., Riley, J., Cook, D.E., Hodgson, D., Stetson, D., Barrett, J.C., Kortlever, R.M., Evan, G.I., Hackshaw, A., Daber, R.D., Shaw, J.A., Aerts, H.J.W.L., Licon, A., Stahl, J., Jamal-Hanjani, M., Birkbak, N.J., McGranahan, N. and Swanton, C.
Nature 616 (7957): 553-562. 20 April 2023

Sensor macrophages derived from human induced pluripotent stem cells to assess pyrogenic contaminations in parenteral drugs.
Abdin, S.M. ORCID: https://orcid.org/0009-0003-2534-5726, Mansel, F., Rafiei Hashtchin, A., Ackermann, M., Hansen, G., Becker, B., Kick, B., Pham, N., Dietz, H., Schaniel, C., Martin, U., Spreitzer, I. and Lachmann, N.
Biofabrication 16 (3): 035017. July 2024

Early gut-vascular barrier breakdown precedes colitis onset in murine models.
Abdou, Mariam Mohamed, Kreiß, Lucas, Schmid, Benjamin, Thoma, Oana-Maria, Krüger, René, Bénard, Alan, Müller, Tanja M., Knauss, Annkathrin, Gabel, Michael, González-Acera, Miguel, Lyu, Yanmin, Petter, Katja, Lindemann, Aylin, Saad, Mina Saad Aziz, Eichhorn, Philip, Becker, Christoph, Naschberger, Elisabeth, Zundler, Sebastian, Weigmann, Benno, Rath, Timo, Atreya, Raja, Kühl, Anja A., Trajanoski, Zlatko, Friedrich, Oliver, Waldner, Maximilian J., Neurath, Markus F., Herrmann, Martin, Schürmann, Sebastian, Britzen-Laurent, Nathalie and Stürzl, Michael
Cellular and molecular gastroenterology and hepatology : 101795. 29 April 2026 (In Press)

Expression of an efficient selection marker out of a duplicated site in the ITRs of a modified vaccinia virus Ankara (MVA).
Abidi, S., Elhazaz Fernandez, A. ORCID: https://orcid.org/0009-0008-6930-7429, Seehase, N., Hanisch, L., Karlas, A. ORCID: https://orcid.org/0000-0002-2187-2057, Sandig, V. and Jordan, I. ORCID: https://orcid.org/0000-0003-2711-7252
Vaccines 12 (12): 1377. December 2024

The interleukin-11 receptor variant p.W307R results in craniosynostosis in humans.
Ahmad, I., Lokau, J., Kespohl, B., Malik, N.A., Baig, S.M., Hartig, R., Behme, D., Schwab, R., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Jameel, M., Mucha, S., Thiele, H., Tariq, M., Nürnberg, P., Erdmann, J. and Garbers, C.
Scientific Reports 13 (1): 13479. 18 August 2023

miRNA regulation in brain tissue space: the 3'UTR perspective.
Aigner, Denise ORCID: https://orcid.org/0009-0001-0489-1010, Bartsch, Florian ORCID: https://orcid.org/0000-0002-8285-9964, Bhaskar, Poojashree ORCID: https://orcid.org/0009-0006-0027-7239, Emmenegger, Lisa ORCID: https://orcid.org/0000-0003-2165-7944, Karaiskos, Nikos ORCID: https://orcid.org/0000-0001-7771-3947, Rajewsky, Nikolaus ORCID: https://orcid.org/0000-0002-4785-4332 and Rybak-Wolf, Agnieszka ORCID: https://orcid.org/0000-0002-1192-5290
RNA 32 (4): 472-488. April 2026

Clonal driver neoantigen loss under EGFR TKI and immune selection pressures.
Al Bakir, M. ORCID: https://orcid.org/0000-0002-0846-8332, Reading, J.L. ORCID: https://orcid.org/0000-0001-5381-978X, Gamble, S., Rosenthal, R., Uddin, I., Rowan, A., Przewrocka, J., Rogers, A. ORCID: https://orcid.org/0000-0002-7071-7889, Wong, Y.N.S., Bentzen, A.K., Veeriah, S., Ward, S. ORCID: https://orcid.org/0000-0002-6777-5279, Garnett, A.T., Kalavakur, P., Martínez-Ruiz, C. ORCID: https://orcid.org/0000-0002-4817-0565, Puttick, C. ORCID: https://orcid.org/0009-0006-3022-8737, Huebner, A. ORCID: https://orcid.org/0000-0001-8009-4999, Cook, D.E. ORCID: https://orcid.org/0000-0003-3347-562X, Moore, D.A. ORCID: https://orcid.org/0000-0002-6296-1312, Abbosh, C., Hiley, C.T., Naceur-Lombardelli, C. ORCID: https://orcid.org/0000-0002-7097-0307, Watkins, T.B.K., Petkovic, M. ORCID: https://orcid.org/0000-0003-2875-216X, Schwarz, R.F. ORCID: https://orcid.org/0000-0001-9155-4268, Gálvez-Cancino, F. ORCID: https://orcid.org/0000-0001-8417-1891, Litchfield, K. ORCID: https://orcid.org/0000-0002-3725-0914, Meldgaard, P. ORCID: https://orcid.org/0000-0002-5788-4463, Sorensen, B.S. ORCID: https://orcid.org/0000-0002-9472-8099, Madsen, L.B., Jäger, D., Forster, M.D., Arkenau, T., Domingo-Vila, C., Tree, T.I.M., Kadivar, M. ORCID: https://orcid.org/0000-0003-1499-191X, Hadrup, S.R. ORCID: https://orcid.org/0000-0002-5937-4344, Chain, B. ORCID: https://orcid.org/0000-0002-7417-3970, Quezada, S.A. ORCID: https://orcid.org/0000-0002-9763-1700, McGranahan, N. ORCID: https://orcid.org/0000-0001-9537-4045 and Swanton, C. ORCID: https://orcid.org/0000-0002-4299-3018
Nature 639 (639): 639. 27 March 2025

The evolution of non-small cell lung cancer metastases in TRACERx.
Al Bakir, M., Huebner, A., Martínez-Ruiz, C., Grigoriadis, K., Watkins, T.B.K., Pich, O., Moore, D.A., Veeriah, S., Ward, S., Laycock, J., Johnson, D., Rowan, A., Razaq, M., Akther, M., Naceur-Lombardelli, C., Prymas, P., Toncheva, A., Hessey, S., Dietzen, M., Colliver, E., Frankell, A.M., Bunkum, A., Lim, E.L., Karasaki, T., Abbosh, C., Hiley, C.T., Hill, M.S., Cook, D.E., Wilson, G.A., Salgado, R., Nye, E., Stone, R.K., Fennell, D.A., Price, G., Kerr, K.M., Naidu, B., Middleton, G., Summers, Y., Lindsay, C.R., Blackhall, F.H., Cave, J., Blyth, K.G., Nair, A., Ahmed, A., Taylor, M.N., Procter, A.J., Falzon, M., Lawrence, D., Navani, N., Thakrar, R.M., Janes, S.M., Papadatos-Pastos, D., Forster, M.D., Lee, S.M., Ahmad, T., Quezada, S.A., Peggs, K.S., Van Loo, P., Dive, C., Hackshaw, A., Birkbak, N.J., Zaccaria, S., Jamal-Hanjani, M., McGranahan, N. and Swanton, C.
Nature 616 (7957): 534-542. April 2023

Enhancing biomarker based oncology trial matching using large language models.
Al Khoury, N., Shaik, M., Wurmus, R. ORCID: https://orcid.org/0009-0003-0140-4189 and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
NPJ Digital Medicine 8 (1): 250. 6 May 2025

Sex-specific molecular signature of mouse podocytes in homeostasis and in response to pharmacological challenge with rapamycin.
Al-Diab, O., Sünkel, C. ORCID: https://orcid.org/0000-0002-5326-6043, Blanc, E. ORCID: https://orcid.org/0000-0002-4369-0254, Catar, R.A., Ashraf, M.I., Zhao, H., Wang, P., Rinschen, M.M., Fritsche-Guenther, R. ORCID: https://orcid.org/0000-0002-6965-0226, Grahammer, F., Bachmann, S., Beule, D. ORCID: https://orcid.org/0000-0002-3284-0632, Kirwan, J.A. ORCID: https://orcid.org/0000-0002-5423-1651, Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332, Huber, T.B., Gürgen, D. ORCID: https://orcid.org/0000-0001-9241-6537 and Kusch, A. ORCID: https://orcid.org/0000-0002-6666-7081
Biology of Sex Differences 15 (1): 72. 15 September 2024

Body composition and lung cancer-associated cachexia in TRACERx.
Al-Sawaf, O. ORCID: https://orcid.org/0000-0001-9895-0570, Weiss, J., Skrzypski, M., Lam, J.M. ORCID: https://orcid.org/0000-0001-9523-5029, Karasaki, T. ORCID: https://orcid.org/0000-0001-6863-2360, Zambrana, F., Kidd, A.C., Frankell, A.M. ORCID: https://orcid.org/0000-0002-0341-7878, Watkins, T.B.K., Martínez-Ruiz, C. ORCID: https://orcid.org/0000-0002-4817-0565, Puttick, C., Black, J.R.M., Huebner, A. ORCID: https://orcid.org/0000-0001-8009-4999, Bakir, M.A. ORCID: https://orcid.org/0000-0002-0846-8332, Sokač, M., Collins, S., Veeriah, S., Magno, N., Naceur-Lombardelli, C., Prymas, P., Toncheva, A., Ward, S. ORCID: https://orcid.org/0000-0002-6777-5279, Jayanth, N., Salgado, R. ORCID: https://orcid.org/0000-0002-1110-3801, Bridge, C.P. ORCID: https://orcid.org/0000-0002-2242-351X, Christiani, D.C. ORCID: https://orcid.org/0000-0002-0301-0242, Mak, R.H. ORCID: https://orcid.org/0000-0002-8754-0565, Bay, C., Rosenthal, M., Sattar, N., Welsh, P. ORCID: https://orcid.org/0000-0002-7970-3643, Liu, Y. ORCID: https://orcid.org/0000-0002-6419-1980, Perrimon, N. ORCID: https://orcid.org/0000-0001-7542-472X, Popuri, K., Beg, M.F., McGranahan, N., Hackshaw, A. ORCID: https://orcid.org/0000-0002-5570-5070, Breen, D.M., O'Rahilly, S. ORCID: https://orcid.org/0000-0003-2199-4449, Birkbak, N.J. ORCID: https://orcid.org/0000-0003-1613-9587, Aerts, H.J.W.L. ORCID: https://orcid.org/0000-0002-2122-2003, Jamal-Hanjani, M. ORCID: https://orcid.org/0000-0003-1212-1259 and Swanton, C. ORCID: https://orcid.org/0000-0002-4299-3018
Nature Medicine 29 (4): 846-858. April 2023

Age-related and disease locus-specific mechanisms contribute to early remodelling of chromatin structure in Huntington's disease mice.
Alcalá-Vida, R. ORCID: https://orcid.org/0000-0003-3540-645X, Seguin, J., Lotz, C., Molitor, A.M., Irastorza-Azcarate, I. ORCID: https://orcid.org/0000-0001-5245-2322, Awada, A., Karasu, N. ORCID: https://orcid.org/0000-0003-3568-3705, Bombardier, A., Cosquer, B., Skarmeta, J.L.G., Cassel, J.C., Boutillier, A.L., Sexton, T. ORCID: https://orcid.org/0000-0002-7824-1846 and Merienne, K. ORCID: https://orcid.org/0000-0003-2549-2315
Nature Communications 12 (1): 364. 13 January 2021

Sites of transcription initiation drive mRNA isoform selection.
Alfonso-Gonzalez, C., Legnini, I. ORCID: https://orcid.org/0000-0002-8984-5215, Holec, S., Arrigoni, L., Ozbulut, H.C., Mateos, F., Koppstein, D., Rybak-Wolf, A. ORCID: https://orcid.org/0000-0002-1192-5290, Bönisch, U., Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332 and Hilgers, V.
Cell 186 (11): 2438-2455. 25 May 2023

Rapid nuclear deadenylation of mammalian messenger RNA.
Alles, J. ORCID: https://orcid.org/0000-0003-0681-0410, Legnini, I. ORCID: https://orcid.org/0000-0002-8984-5215, Pacelli, M. and Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332
iScience 26 (1): 105878. 20 January 2023

Spermidine mitigates immune cell senescence and boosts vaccine responses in healthy older adults -- a pilot study.
Alsaleh, Ghada, Ali, Mohammad ORCID: https://orcid.org/0000-0003-0170-7182, Kayvanjoo, Amir Hossein ORCID: https://orcid.org/0000-0003-1315-8336, Liu, Feng, Moreau, Tanaïs, Bibi, Sagida, Luo, Lin, Govender, Melissa, Carroll, Miles, Hofer, Sebastian J., Tobias, Eisenberg, Magnes, Christoph, Kell, Loren ORCID: https://orcid.org/0000-0003-1322-2027, Chung, Christopher, Deng, Yu, Bhandari, Aneesha, Garner, Lucy ORCID: https://orcid.org/0000-0002-6461-252X, Conrad, Thomas ORCID: https://orcid.org/0000-0001-5618-6295, Chen, Liye, Kronsteiner-Dobramysl, Barbara, Dunachie, Susie, Spiller, Owen B. ORCID: https://orcid.org/0000-0002-9117-6911, Lambe, Teresa, Klenerman, Paul, Jones, Lucy C. and Simon, A. Katharina ORCID: https://orcid.org/0000-0002-4077-7995
Aging Cell 25 (6): e70545. June 2026

Single-nucleus and spatial transcriptome reveal adrenal homeostasis in normal and tumoural adrenal glands.
Altieri, B. ORCID: https://orcid.org/0000-0003-2616-3249, Secener, A.K. ORCID: https://orcid.org/0000-0003-4806-2852, Sai, S. ORCID: https://orcid.org/0000-0001-6865-341X, Fischer, C. ORCID: https://orcid.org/0000-0003-0329-2435, Sbiera, S., Arampatzi, P., Kircher, S., Herterich, S., Landwehr, L.S., Vitcetz, S.N., Braeuning, C. ORCID: https://orcid.org/0009-0007-1439-9920, Fassnacht, M. ORCID: https://orcid.org/0000-0001-6170-6398, Ronchi, C.L. ORCID: https://orcid.org/0000-0001-5020-2071 and Sauer, S. ORCID: https://orcid.org/0000-0002-4794-3693
Clinical and Translational Medicine 14 (8): e1798. August 2024

Transcriptomic profiling reveals substrate- and shear stress-dependent maturation of human small intestinal epithelial cells.
Alzain, Nadra, Almalla, Ahed, Sandu, Ketaki, Gerbeth, Lorenz, Ziegler, Jörn F., Gutwein, Catharina, Weidner, Patrick ORCID: https://orcid.org/0000-0003-2448-5981, Glauben, Rainer, Weinhart, Marie and Siegmund, Britta
Frontiers in Pharmacology 17 : 1706106. 1 May 2026

In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation.
Anania, C., Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Jedamzick, J., Bolondi, A. ORCID: https://orcid.org/0000-0002-1096-9435, Cova, G., Brieske, N., Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803, Wittler, L., Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260 and Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
Nature Genetics 54 (7): 1026-1036. July 2022

Putative mobilized colistin resistance genes in the human gut microbiome.
Andrade, B.G.N., Goris, T., Afli, H., Coutinho, F.H., Dávila, A.M.R. and Cuadrat, R.R.C. ORCID: https://orcid.org/0000-0001-8289-2599
BMC Microbiology 21 : 220. 22 July 2021

De novo whole genome assembly of the Roborovski dwarf hamster (Phodopus roborovskii) genome, an animal model for severe/critical COVID-19.
Andreotti, S. ORCID: https://orcid.org/0000-0001-7678-9720, Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Quedenau, C. ORCID: https://orcid.org/0000-0002-6846-4915, Borodina, T. ORCID: https://orcid.org/0000-0002-6978-016X, Nouailles, G., Teixeira Alves, L.G. ORCID: https://orcid.org/0000-0002-5822-4168, Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734, Bieniara, M., Trimpert, J. and Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806
Genome Biology and Evolution 14 (7): evac100. July 2022

Integrative analysis of macrophage ribo-Seq and RNA-Seq data define glucocorticoid receptor regulated inflammatory response genes into distinct regulatory classes.
Ansari, S.A., Dantoft, W., Ruiz-Orera, J. ORCID: https://orcid.org/0000-0002-8317-0034, Syed, A.P., Blachut, S. ORCID: https://orcid.org/0009-0007-0102-9867, van Heesch, S. ORCID: https://orcid.org/0000-0001-9593-1980, Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223 and Uhlenhaut, N.H.
Computational and Structural Biotechnology Journal 20 : 5622-5638. 3 October 2022

The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators.
Appel, L.M. ORCID: https://orcid.org/0000-0002-6769-0777, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Benedum, J. ORCID: https://orcid.org/0000-0003-4475-7577, Grishkovskaya, I. ORCID: https://orcid.org/0000-0003-0164-9373, Strobl, X., Polyansky, A. ORCID: https://orcid.org/0000-0002-1011-2706, Ammann, G. ORCID: https://orcid.org/0000-0003-2135-058X, Platzer, S. ORCID: https://orcid.org/0000-0002-2518-6273, Neudolt, A. ORCID: https://orcid.org/0000-0002-5298-1205, Wunder, A., Walch, L., Kaiser, S., Zagrovic, B. ORCID: https://orcid.org/0000-0003-3814-3675, Djinovic-Carugo, K. ORCID: https://orcid.org/0000-0003-0252-2972, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117 and Slade, D. ORCID: https://orcid.org/0000-0002-0052-5910
Nature Communications 14 (1): 166. 11 January 2023

PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.
Appel, L.M. ORCID: https://orcid.org/0000-0002-6769-0777, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Bruno, M. ORCID: https://orcid.org/0000-0002-8401-7744, Grishkovskaya, I., Kasiliauskaite, A., Kaufmann, T. ORCID: https://orcid.org/0000-0002-9734-260X, Schoeberl, U.E., Puchinger, M.G., Kostrhon, S., Ebenwaldner, C., Sebesta, M., Beltzung, E., Mechtler, K. ORCID: https://orcid.org/0000-0002-3392-9946, Lin, G., Vlasova, A., Leeb, M. ORCID: https://orcid.org/0000-0001-5114-4782, Pavri, R., Stark, A. ORCID: https://orcid.org/0000-0003-2611-0841, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117, Stefl, R., Bernecky, C. ORCID: https://orcid.org/0000-0003-0893-7036, Djinovic-Carugo, K. ORCID: https://orcid.org/0000-0003-0252-2972 and Slade, D. ORCID: https://orcid.org/0000-0002-0052-5910
Nature Communications 12 (1): 6078. 19 October 2021

Inhibiting PHGDH with NCT-503 reroutes glucose-derived carbons into the TCA cycle, independently of its on-target effect.
Arlt, B. ORCID: https://orcid.org/0000-0002-6665-4037, Mastrobuoni, G. ORCID: https://orcid.org/0000-0003-4509-1295, Wuenschel, J., Astrahantseff, K. ORCID: https://orcid.org/0000-0002-7872-1997, Eggert, A. ORCID: https://orcid.org/0000-0003-3476-8184, Kempa, S. ORCID: https://orcid.org/0000-0002-0696-9299 and Deubzer, H.E. ORCID: https://orcid.org/0000-0002-6115-4893
Journal of Enzyme Inhibition and Medicinal Chemistry 36 (1): 1282-1289. 30 June 2021

Understanding the variability of peanut-oral immunotherapy responses by multi-omics profiling of immune cells.
Arnau-Soler, Aleix ORCID: https://orcid.org/0000-0001-9768-0513, Ashley, Sarah E. ORCID: https://orcid.org/0000-0001-9973-9742, Ghauri, Ahla ORCID: https://orcid.org/0000-0003-4665-3624, Jeanrenaud, Alexander C.S.N. ORCID: https://orcid.org/0000-0002-4230-9976, Marenholz, I. ORCID: https://orcid.org/0009-0007-6933-3849, Blumchen, Katharina, Cibin, Penelope ORCID: https://orcid.org/0009-0008-7582-9653, Iakupova, Alisa ORCID: https://orcid.org/0000-0002-9452-4010, Hubner, Norbert ORCID: https://orcid.org/0000-0002-1218-6223, Beyer, Kirsten and Lee, Young-Ae ORCID: https://orcid.org/0000-0002-1817-9163
Allergy 80 (12): 3342-3358. December 2025

SNT: a unifying toolbox for quantification of neuronal anatomy.
Arshadi, C. ORCID: https://orcid.org/0000-0002-1885-080X, Günther, U. ORCID: https://orcid.org/0000-0002-1179-8228, Eddison, M., Harrington, K.I.S. ORCID: https://orcid.org/0000-0002-7237-1973 and Ferreira, T.A. ORCID: https://orcid.org/0000-0001-6866-1540
Nature Methods 18 : 374-377. April 2021

LABKIT: labeling and segmentation toolkit for big image data.
Arzt, M., Deschamps, J., Schmied, C., Pietzsch, T., Schmidt, D. ORCID: https://orcid.org/0000-0002-8621-9438, Tomancak, P., Haase, R. and Jug, F.
Frontiers in Computer Science 4 : 777728. 10 February 2022

Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients.
Aschenbrenner, A.C., Mouktaroudi, M., Krämer, B., Oestreich, M., Antonakos, N., Nuesch-Germano, M., Gkizeli, K., Bonaguro, L., Reusch, N., Baßler, K., Saridaki, M., Knoll, R., Pecht, T., Kapellos, T.S., Doulou, S., Kröger, C., Herbert, M., Holsten, L., Horne, A. ORCID: https://orcid.org/0000-0002-4209-4573, Gemünd, I.D., Rovina, N., Agrawal, S., Dahm, K., van Uelft, M., Drews, A., Lenkeit, L., Bruse, N., Gerretsen, J., Gierlich, J., Becker, M., Händler, K., Kraut, M., Theis, H., Mengiste, S., Domenico, E., Schulte-Schrepping, J., Seep, L., Raabe, J., Hoffmeister, C., ToVinh, M., Keitel, V., Rieke, G., Talevi, V., Skowasch, D., Aziz, N.A., Pickkers, P., van de Veerdonk, F.L., Netea, M.G., Schultze, J.L., Kox, M., Breteler, M.M.B., Nattermann, J., Koutsoukou, A., Giamarellos-Bourboulis, E.J. and Ulas, T. ORCID: https://orcid.org/0000-0002-9785-4197
Genome Medicine 13 (1): 7. 13 January 2021

Post-COVID exercise intolerance is associated with capillary alterations and immune dysregulations in skeletal muscles.
Aschman, T. ORCID: https://orcid.org/0000-0002-2101-6146, Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Baum, O., Hentschel, A., Rust, R., Legler, F., Preusse, C., Meyer-Arndt, L., Büttnerova, I., Förster, A., Cengiz, D., Teixeira Alves, L.G. ORCID: https://orcid.org/0000-0002-5822-4168, Schneider, J., Kedor, C., Bellmann-Strobl, J., Sanchin, A., Goebel, H.H., Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734, Corman, V., Roos, A., Heppner, F.L., Radbruch, H., Paul, F. ORCID: https://orcid.org/0000-0002-6378-0070, Scheibenbogen, C., Dengler, N.F. and Stenzel, W.
Acta Neuropathologica Communications 11 (1): 193. 8 December 2023

De novo variants of CSNK2B cause a new intellectual disability-craniodigital syndrome by disrupting the canonical Wnt signaling pathway.
Asif, M., Kaygusuz, E., Shinawi, M., Nickelsen, A., Hsieh, T.C., Wagle, P., Budde, B., Hochscherf, J., Abdullah, U., Höning, S., Nienberg, C., Lindenblatt, D., Noegel, A.A., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Thiele, H., Motameny, S., Fleischer, N., Segal, I., Pais, L., Tinschert, S., Samra, N.G., Savatt, J.M., Rudy, N.L., De Luca, C., Fortugno, P., White, S.M., Krawitz, P., Hurst, A.C.E., Niefind, K., Jose, J., Brancati, F., Nürnberg, P. and Hussain, M.S.
Human Genetics and Genomics Advances 3 (3): 100111. 14 July 2022

A novel missense variant of SCN4A co-segregates with congenital essential tremor in a consanguineous Kurdish family.
Asif, M., Mocanu, I.D., Abdullah, U., Höhne, W., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Makhdoom, E.U.H., Thiele, H., Baig, S.M., Nürnberg, P., Graul-Neumann, L. ORCID: https://orcid.org/0000-0002-6540-6314 and Hussain, M.S. ORCID: https://orcid.org/0000-0002-1353-8809
American Journal of Medical Genetics A 188 (4): 1251-1258. April 2022

Expanding the spectrum of EEF1D neurodevelopmental disorders: biallelic variants in the guanine exchange domain.
Averdunk, L., Al-Thihli, K., Surowy, H., Lüdecke, H.J., Drechsler, M., Yigit, G. ORCID: https://orcid.org/0000-0003-2777-0198, Smorag, L., Hallak, B.A., Li, Y., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Guthoff, T., Wallot, M., Nürnberg, P., Wollnik, B., Abou Jamra, R., Al-Maawali, A. ORCID: https://orcid.org/0000-0002-1404-8887 and Wieczorek, D.
Clinical Genetics 103 (4): 484-491. April 2023

Intestinal interstitial fluid isolation provides novel insight into the human host-microbiome interface.
Avery, E.G. ORCID: https://orcid.org/0000-0002-9094-1423, Haag, L.M., McParland, V. ORCID: https://orcid.org/0000-0003-0731-3272, Kedziora, S.M. ORCID: https://orcid.org/0000-0003-0124-2557, Zigra, G.J., Valdes, D.S. ORCID: https://orcid.org/0000-0002-1309-5147, Kirchner, M. ORCID: https://orcid.org/0000-0002-7049-534X, Popp, O. ORCID: https://orcid.org/0000-0001-6240-4666, Geisberger, S. ORCID: https://orcid.org/0000-0001-6477-1312, Nonn, O. ORCID: https://orcid.org/0000-0001-6385-2866, Karlsen, T.V., N'Diaye, G., Yarritu, A. ORCID: https://orcid.org/0000-0002-1724-0559, Bartolomaeus, H. ORCID: https://orcid.org/0000-0003-4288-3828, Bartolomaeus, T.U.P. ORCID: https://orcid.org/0000-0002-5156-7184, Tagiyeva, N.A. ORCID: https://orcid.org/0009-0006-7918-1220, Wimmer, M.I. ORCID: https://orcid.org/0009-0004-5793-0249, Haase, N. ORCID: https://orcid.org/0000-0003-0727-1738, Zhang, Y.D. ORCID: https://orcid.org/0009-0003-9465-2033, Wilhelm, A., Grütz, G., Tenstad, O., Wilck, N. ORCID: https://orcid.org/0000-0003-3189-5364, Forslund, S.K. ORCID: https://orcid.org/0000-0003-4285-6993, Klopfleisch, R., Kühl, A.A., Atreya, R., Kempa, S. ORCID: https://orcid.org/0000-0002-0696-9299, Mertins, P. ORCID: https://orcid.org/0000-0002-2245-528X, Siegmund, B., Wiig, H. ORCID: https://orcid.org/0000-0002-7740-8210 and Müller, D.N. ORCID: https://orcid.org/0000-0003-3650-5644
Cardiovascular Research 121 (5): 803-816. April 2025

Quantifying the impact of gut microbiota on inflammation and hypertensive organ damage.
Avery, E.G. ORCID: https://orcid.org/0000-0002-9094-1423, Bartolomaeus, H. ORCID: https://orcid.org/0000-0003-4288-3828, Rauch, A. ORCID: https://orcid.org/0000-0002-5152-5830, Chen, C.Y. ORCID: https://orcid.org/0000-0003-1765-7132, N'Diaye, G., Löber, U. ORCID: https://orcid.org/0000-0001-7468-9531, Bartolomaeus, T.U.P. ORCID: https://orcid.org/0000-0002-5156-7184, Fritsche-Guenther, R. ORCID: https://orcid.org/0000-0002-6965-0226, Rodrigues, A.F. ORCID: https://orcid.org/0000-0002-7219-6896, Yarritu, A. ORCID: https://orcid.org/0000-0002-1724-0559, Zhong, C., Fei, L., Tsvetkov, D. ORCID: https://orcid.org/0000-0002-6472-971X, Todiras, M. ORCID: https://orcid.org/0000-0002-9373-4753, Park, J.K., Markó, L. ORCID: https://orcid.org/0000-0003-1888-5575, Maifeld, A. ORCID: https://orcid.org/0000-0001-8756-747X, Patzak, A., Bader, M. ORCID: https://orcid.org/0000-0003-4780-4164, Kempa, S. ORCID: https://orcid.org/0000-0002-0696-9299, Kirwan, J.A. ORCID: https://orcid.org/0000-0002-5423-1651, Forslund, S.K. ORCID: https://orcid.org/0000-0003-4285-6993, Müller, D.N. ORCID: https://orcid.org/0000-0003-3650-5644 and Wilck, N. ORCID: https://orcid.org/0000-0003-3189-5364
Cardiovascular Research 119 (6): 1441-1452. May 2023

Ablation of lysophosphatidic acid receptor 1 attenuates hypertrophic cardiomyopathy in a mouse model.
Axelsson Raja, A., Wakimoto, H., DeLaughter, D.M., Reichart, D., Gorham, J., Conner, D.A., Lun, M., Probst, C.K., Sakai, N., Knipe, R.S., Montesi, S.B., Shea, B., Adam, L.P., Leinwand, L.A. ORCID: https://orcid.org/0000-0003-1470-4810, Wan, W., Choi, E.S., Lindberg, E.L. ORCID: https://orcid.org/0000-0002-2979-433X, Patone, G. ORCID: https://orcid.org/0000-0002-7242-0341, Noseda, M., Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223, Seidman, C.E. ORCID: https://orcid.org/0000-0001-6380-1209, Tager, A.M., Seidman, J.G. ORCID: https://orcid.org/0000-0002-9082-3566 and Ho, C.Y. ORCID: https://orcid.org/0000-0002-7334-7924
Proceedings of the National Academy of Sciences of the United States of America 119 (28): e2204174119. 12 July 2022

RS-FISH: precise, interactive, fast, and scalable FISH spot detection.
Bahry, E. ORCID: https://orcid.org/0000-0002-6358-2576, Breimann, L. ORCID: https://orcid.org/0000-0001-7702-5749, Zouinkhi, M. ORCID: https://orcid.org/0000-0002-9441-2908, Epstein, L., Kolyvanov, K., Mamrak, N., King, B., Long, Xi, Harrington, K.I.S. ORCID: https://orcid.org/0000-0002-7237-1973, Lionnet, T. ORCID: https://orcid.org/0000-0003-1508-0202 and Preibisch, S. ORCID: https://orcid.org/0000-0002-0276-494X
Nature Methods 19 (12): 1563-1567. December 2022

In situ Patch-seq analysis of microglia reveals a lack of stress genes as found in FACS-isolated microglia.
Bakina, O. ORCID: https://orcid.org/0000-0002-3486-9906, Conrad, T. ORCID: https://orcid.org/0000-0001-5618-6295, Mitic, N. ORCID: https://orcid.org/0000-0003-0141-1293, Vidal, R.O. ORCID: https://orcid.org/0000-0003-4217-2014, Obrusnik, T., Sai, S. ORCID: https://orcid.org/0000-0001-6865-341X, Nolte, C. ORCID: https://orcid.org/0000-0001-5398-3440, Semtner, M. ORCID: https://orcid.org/0000-0001-9379-9023 and Kettenmann, H. ORCID: https://orcid.org/0000-0001-8208-0291
PLoS ONE 19 (7): e0302376. 11 July 2024

Epithelial OPA1 links mitochondrial fusion to inflammatory bowel disease.
Bao, L.L. ORCID: https://orcid.org/0009-0003-3081-7062, Yu, Y.Q. ORCID: https://orcid.org/0000-0002-4847-8877, González-Acera, M. ORCID: https://orcid.org/0009-0008-9445-5650, Patankar, J.V. ORCID: https://orcid.org/0000-0002-1884-7424, Giessl, A. ORCID: https://orcid.org/0000-0002-9768-2049, Sturm, G. ORCID: https://orcid.org/0000-0001-9584-7842, Kühl, A.A. ORCID: https://orcid.org/0000-0003-2293-5387, Atreya, R. ORCID: https://orcid.org/0000-0002-8556-8433, Erkert, L., Gámez-Belmonte, R. ORCID: https://orcid.org/0000-0002-7159-8957, Krug, S.M. ORCID: https://orcid.org/0000-0002-1293-2484, Schmid, B. ORCID: https://orcid.org/0000-0002-9327-2296, Tripal, P., Chiriac, M.T., Hildner, K., Siegmund, B. ORCID: https://orcid.org/0000-0002-0055-958X, Wirtz, S. ORCID: https://orcid.org/0000-0001-6936-7431, Stürzl, M. ORCID: https://orcid.org/0000-0002-9276-2824, Mohamed Abdou, M. ORCID: https://orcid.org/0009-0002-7352-166X, Trajanoski, Z. ORCID: https://orcid.org/0000-0002-0636-7351, Neurath, M.F. ORCID: https://orcid.org/0000-0003-4344-1474, Zorzano, A. ORCID: https://orcid.org/0000-0002-1638-0306 and Becker, C. ORCID: https://orcid.org/0000-0002-1388-1041
Science Translational Medicine 17 (781): eadn8699. January 2025

Extracellular matrix in heart Failure: role of ADAMTS5 in proteoglycan remodeling.
Barallobre-Barreiro, J. ORCID: https://orcid.org/0000-0001-6236-2304, Radovits, T., Fava, M., Mayr, U., Lin, W.Y., Ermolaeva, E., Martínez-López, D., Lindberg, E.L. ORCID: https://orcid.org/0000-0002-2979-433X, Duregotti, E. ORCID: https://orcid.org/0000-0003-1409-4063, Daróczi, L., Hasman, M., Schmidt, L.E. ORCID: https://orcid.org/0000-0001-7565-1455, Singh, B. ORCID: https://orcid.org/0000-0002-5834-8320, Lu, R., Baig, F., Siedlar, A.M., Cuello, F., Catibog, N., Theofilatos, K. ORCID: https://orcid.org/0000-0001-6799-0553, Shah, A.M. ORCID: https://orcid.org/0000-0002-6547-0631, Crespo-Leiro, M.G. ORCID: https://orcid.org/0000-0002-3085-167X, Doménech, N., Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223, Merkely, B. ORCID: https://orcid.org/0000-0001-6514-0723 and Mayr, M. ORCID: https://orcid.org/0000-0002-0597-829X
Circulation 144 (25): 2021-2034. 21 December 2021

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Baranasic, D. ORCID: https://orcid.org/0000-0001-5948-0932, Hörtenhuber, M. ORCID: https://orcid.org/0000-0002-5599-5565, Balwierz, P.J. ORCID: https://orcid.org/0000-0002-1548-4605, Zehnder, T. ORCID: https://orcid.org/0000-0002-4127-2673, Mukarram, A.K., Nepal, C., Várnai, C. ORCID: https://orcid.org/0000-0003-0048-9507, Hadzhiev, Y. ORCID: https://orcid.org/0000-0002-1134-4904, Jimenez-Gonzalez, A. ORCID: https://orcid.org/0000-0001-7702-6135, Li, N. ORCID: https://orcid.org/0000-0002-8919-2357, Wragg, J., D'Orazio, F.M., Relic, D. ORCID: https://orcid.org/0000-0001-6237-3345, Pachkov, M. ORCID: https://orcid.org/0000-0001-7616-6435, Díaz, N. ORCID: https://orcid.org/0000-0002-0319-3448, Hernández-Rodríguez, B. ORCID: https://orcid.org/0000-0002-5118-8715, Chen, Z. ORCID: https://orcid.org/0000-0002-8376-7367, Stoiber, M., Dong, M. ORCID: https://orcid.org/0000-0003-4084-3099, Stevens, I. ORCID: https://orcid.org/0000-0003-3823-1499, Ross, S.E., Eagle, A., Martin, R., Obasaju, O. ORCID: https://orcid.org/0000-0001-5952-3103, Rastegar, S. ORCID: https://orcid.org/0000-0003-4411-5646, McGarvey, A.C. ORCID: https://orcid.org/0000-0003-3838-1139, Kopp, W. ORCID: https://orcid.org/0000-0003-0376-0032, Chambers, E. ORCID: https://orcid.org/0000-0003-1252-8059, Wang, D. ORCID: https://orcid.org/0000-0003-0068-1005, Kim, H.R., Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Naranjo, S. ORCID: https://orcid.org/0000-0002-4529-3332, Łapiński, M. ORCID: https://orcid.org/0000-0003-4892-976X, Chong, V. ORCID: https://orcid.org/0000-0002-2547-3694, Mathavan, S., Peers, B., Sauka-Spengler, T. ORCID: https://orcid.org/0000-0001-9289-0263, Vingron, M. ORCID: https://orcid.org/0000-0002-1765-4241, Carninci, P. ORCID: https://orcid.org/0000-0001-7202-7243, Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116, Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340, Burgess, S.M. ORCID: https://orcid.org/0000-0003-1147-0596, Winata, C. ORCID: https://orcid.org/0000-0002-7718-5248, van Eeden, F. ORCID: https://orcid.org/0000-0003-3483-8269, Vaquerizas, J.M. ORCID: https://orcid.org/0000-0002-6583-6541, Gómez-Skarmeta, J.L. ORCID: https://orcid.org/0000-0001-5125-4332, Onichtchouk, D. ORCID: https://orcid.org/0000-0001-6497-1445, Brown, B.J. ORCID: https://orcid.org/0000-0002-5898-5848, Bogdanovic, O. ORCID: https://orcid.org/0000-0001-5680-0056, van Nimwegen, E. ORCID: https://orcid.org/0000-0001-6338-1312, Westerfield, M. ORCID: https://orcid.org/0000-0003-1187-7839, Wardle, F.C ORCID: https://orcid.org/0000-0001-5444-1889, Daub, C.O. ORCID: https://orcid.org/0000-0002-3295-8729, Lenhard, B. ORCID: https://orcid.org/0000-0002-1114-1509 and Müller, F. ORCID: https://orcid.org/0000-0002-0996-774X
Nature Genetics 54 (7): 1037-1050. July 2022

Multi-omics alleviates the limitations of panel sequencing for cancer drug response prediction.
Baranovskii, A. ORCID: https://orcid.org/0000-0001-7217-3881, Gündüz, I.B. ORCID: https://orcid.org/0000-0003-2641-0916, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Uyar, B. ORCID: https://orcid.org/0000-0002-3170-4890 and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
Cancers 14 (22): 5604. 15 November 2022

Transcriptome analysis reveals high tumor heterogeneity with respect to re-activation of stemness and proliferation programs.
Baranovsky, A. ORCID: https://orcid.org/0000-0001-7217-3881, Ivanov, T., Granovskaya, M., Papatsenko, D. and Pervouchine, D.D.
PLoS ONE 17 (5): e0268626. 19 May 2022

PyZebraScope: an open-source platform for brain-wide neural activity imaging in zebrafish.
Barbara, R., Nagathihalli Kantharaju, M., Haruvi, R., Harrington, K. ORCID: https://orcid.org/0000-0002-7237-1973 and Kawashima, T.
Frontiers in Cell and Developmental Biology 10 : 875044. 19 May 2022

The AICL-KLRF1 axis supports CD4-CD8 T cell communication and cytokine competence in pre-exhausted CD8(+) T cells.
Barone, Matthias ORCID: https://orcid.org/0000-0002-6554-6464, Peidli, Stefan ORCID: https://orcid.org/0000-0002-4257-8690, Neuschulz, Anika ORCID: https://orcid.org/0000-0001-6163-3344, Riesterer, Karla, Iwert, Christina, Junquera, Laia ORCID: https://orcid.org/0009-0006-9259-0213, Sai, Somesh ORCID: https://orcid.org/0000-0001-6865-341X, Bolaji, Olufemi, Bakoueva, Diana, Appelt, Christine ORCID: https://orcid.org/0009-0000-7865-9911, Obermayer, Benedikt ORCID: https://orcid.org/0000-0002-9116-630X, Klinger, Bertram ORCID: https://orcid.org/0000-0003-0242-1506, Trinks, Alexandra ORCID: https://orcid.org/0000-0001-9983-1506, Sieber, Anja ORCID: https://orcid.org/0000-0001-6588-8547, Blüthgen, Nils ORCID: https://orcid.org/0000-0002-0171-7447 and Sawitzki, Birgit ORCID: https://orcid.org/0000-0001-8166-8579
EMBO Reports 27 (8): 2029-2060. 27 April 2026

Extraembryonic gut endoderm cells undergo programmed cell death during development.
Batki, J. ORCID: https://orcid.org/0000-0002-1797-793X, Hetzel, S. ORCID: https://orcid.org/0000-0002-4783-3814, Schifferl, D. ORCID: https://orcid.org/0000-0003-3507-5734, Bolondi, A. ORCID: https://orcid.org/0000-0002-1096-9435, Walther, M., Wittler, L., Grosswendt, S. ORCID: https://orcid.org/0000-0001-7722-2937, Herrmann, B.G. and Meissner, A. ORCID: https://orcid.org/0000-0001-8646-7469
Nature Cell Biology 26 (6): 868-877. June 2024

SARS-CoV-2 infection of human lung air-liquid interface cultures reveals basal cells as relevant targets.
Baumgardt, M., Obermayer, B. ORCID: https://orcid.org/0000-0002-9116-630X, Balázs, A., Löwa, A., Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Teixeira Alves, L.G. ORCID: https://orcid.org/0000-0002-5822-4168, Hellwig, K., Beule, D. ORCID: https://orcid.org/0000-0002-3284-0632, Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734, Müller, M.A., Drosten, C., Mall, M.A., Hippenstiel, S., Hönzke, K. and Hocke, A.C.
Journal of Infectious Diseases 231 (5): 1210-1220. 15 May 2025

State-of-the-art analytical methods of viral infections in human lung organoids.
Baumgardt, M. ORCID: https://orcid.org/0000-0003-2077-3716, Hülsemann, M., Löwa, A., Fatykhova, D., Hoffmann, K., Kessler, M., Mieth, M., Hellwig, K., Frey, D., Langenhagen, A., Voss, A., Obermayer, B. ORCID: https://orcid.org/0000-0002-9116-630X, Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Dökel, S., Gruber, A.D., Tölch, U., Hippenstiel, S., Hocke, A.C. and Hönzke, K. ORCID: https://orcid.org/0000-0003-0826-2825
PLoS ONE 17 (12): e0276115. 20 December 2022

Activation of gp130 signaling in T cells drives T(H)17-mediated multi-organ autoimmunity.
Baumgartner, F. ORCID: https://orcid.org/0000-0003-0768-1956, Bamopoulos, S.A. ORCID: https://orcid.org/0000-0002-5997-7735, Faletti, L. ORCID: https://orcid.org/0000-0002-9213-2478, Hsiao, H.J., Holz, M. ORCID: https://orcid.org/0009-0002-1294-8205, Gonzalez-Menendez, I., Solé-Boldo, L. ORCID: https://orcid.org/0000-0002-6974-9066, Horne, A. ORCID: https://orcid.org/0000-0002-4209-4573, Gosavi, S., Özerdem, C. ORCID: https://orcid.org/0000-0001-6772-0422, Singh, N., Liebig, S. ORCID: https://orcid.org/0000-0002-5494-8476, Ramamoorthy, S. ORCID: https://orcid.org/0000-0003-3468-4247, Lehmann, M. ORCID: https://orcid.org/0000-0002-3786-7375, Demel, U. ORCID: https://orcid.org/0000-0002-6480-4185, Kühl, A.A. ORCID: https://orcid.org/0000-0003-2293-5387, Wartewig, T. ORCID: https://orcid.org/0000-0001-8699-1690, Ruland, J. ORCID: https://orcid.org/0000-0002-8381-3597, Wunderlich, F.T. ORCID: https://orcid.org/0000-0002-9209-3501, Schick, M. ORCID: https://orcid.org/0009-0003-8626-0611, Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231, Rose-John, S. ORCID: https://orcid.org/0000-0002-7519-3279, Haas, S. ORCID: https://orcid.org/0000-0001-9227-2051, Quintanilla-Martinez, L., Feske, S., Ehl, S. ORCID: https://orcid.org/0000-0002-9265-2721, Glauben, R. ORCID: https://orcid.org/0000-0003-2889-2525 and Keller, U. ORCID: https://orcid.org/0000-0002-8485-1958
Science Signaling 17 (824): eadc9662. 20 February 2024

Investigating the role of GLUL as a survival factor in cellular adaptation to glutamine depletion via targeted stable isotope resolved metabolomics.
Bayram, S. ORCID: https://orcid.org/0009-0009-5245-5473, Razzaque, Y.S., Geisberger, S. ORCID: https://orcid.org/0000-0001-6477-1312, Pietzke, M. ORCID: https://orcid.org/0000-0002-6901-8511, Fürst, S., Vechiatto, C., Forbes, M. ORCID: https://orcid.org/0000-0001-7775-8352, Mastrobuoni, G. ORCID: https://orcid.org/0000-0003-4509-1295 and Kempa, S. ORCID: https://orcid.org/0000-0002-0696-9299
Frontiers in Molecular Biosciences 9 : 859787. 12 August 2022

SUMOylation of the chromodomain factor MRG-1 in C. elegans affects chromatin-regulatory dynamics.
Baytek, G. ORCID: https://orcid.org/0000-0001-9731-9461, Blume, A. ORCID: https://orcid.org/0000-0003-3045-8234, Demirel, F.G., Bulut, S., Popp, O. ORCID: https://orcid.org/0000-0001-6240-4666, Mertins, P. ORCID: https://orcid.org/0000-0002-2245-528X and Tursun, B. ORCID: https://orcid.org/0000-0001-7293-8629
Biotechniques 73 (1): 5-17. June 2022

Robust co-immunoprecipitation with mass spectrometry for Caenorhabditis elegans using solid-phase enhanced sample preparation.
Baytek, G. ORCID: https://orcid.org/0000-0001-9731-9461, Popp, O. ORCID: https://orcid.org/0000-0001-6240-4666, Mertins, P. ORCID: https://orcid.org/0000-0002-2245-528X and Tursun, B. ORCID: https://orcid.org/0000-0001-7293-8629
Biotechniques 72 (5): 175-184. May 2022

Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.
Beagrie, R.A. ORCID: https://orcid.org/0000-0003-1076-5595, Thieme, C.J. ORCID: https://orcid.org/0000-0002-1566-0971, Annunziatella, C., Baugher, C., Zhang, Y., Schueler, M., Kukalev, A. ORCID: https://orcid.org/0000-0001-5847-3773, Kempfer, R. ORCID: https://orcid.org/0000-0002-8588-8576, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Li, Y. ORCID: https://orcid.org/0000-0001-5791-096X, Davis, T., Scialdone, A. ORCID: https://orcid.org/0000-0002-4956-2843, Welch, L.R. ORCID: https://orcid.org/0000-0001-6419-9416, Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416 and Pombo, A. ORCID: https://orcid.org/0000-0002-7493-6288
Nature Methods 20 (7): 1037-1047. July 2023

The SPOC proteins DIDO3 and PHF3 co-regulate gene expression and neuronal differentiation.
Benedum, J. ORCID: https://orcid.org/0000-0003-4475-7577, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Appel, L.M. ORCID: https://orcid.org/0000-0002-6769-0777, Walch, L., Bruno, M. ORCID: https://orcid.org/0000-0002-8401-7744, Schneeweiss, R., Gruber, J., Oberndorfer, H., Frank, E., Strobl, X., Polyansky, A. ORCID: https://orcid.org/0000-0002-1011-2706, Zagrovic, B. ORCID: https://orcid.org/0000-0003-3814-3675, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117 and Slade, D. ORCID: https://orcid.org/0000-0002-0052-5910
Nature Communications 14 (1): 7912. 30 November 2023

Clonally resolved single-cell multi-omics identifies routes of cellular differentiation in acute myeloid leukemia.
Beneyto-Calabuig, S., Merbach, A.K., Kniffka, J.A., Antes, M., Szu-Tu, C., Rohde, C., Waclawiczek, A., Stelmach, P., Gräßle, S. ORCID: https://orcid.org/0000-0002-5260-6392, Pervan, P., Janssen, M., Landry, J.J.M., Benes, V., Jauch, A., Brough, M., Bauer, M., Besenbeck, B., Felden, J., Bäumer, S., Hundemer, M., Sauer, T., Pabst, C., Wickenhauser, C., Angenendt, L., Schliemann, C., Trumpp, A., Haas, S. ORCID: https://orcid.org/0000-0001-9227-2051, Scherer, M., Raffel, S., Müller-Tidow, C. and Velten, L.
Cell Stem Cell 30 (5): 706-721. 4 May 2023

ImmuneLENS characterizes systemic immune dysregulation in aging and cancer.
Bentham, R., Jones, T.P. ORCID: https://orcid.org/0000-0003-2748-0780, Black, J.R.M. ORCID: https://orcid.org/0000-0001-5598-7752, Martinez-Ruiz, C. ORCID: https://orcid.org/0000-0002-4817-0565, Dietzen, M. ORCID: https://orcid.org/0000-0002-6853-7563, Litovchenko, M., Thol, K. ORCID: https://orcid.org/0000-0002-4624-118X, Watkins, T.B.K., Bailey, C., Pich, O. ORCID: https://orcid.org/0000-0002-1956-1882, Zhang, Z., Van Loo, P. ORCID: https://orcid.org/0000-0003-0292-1949, Swanton, C. ORCID: https://orcid.org/0000-0002-4299-3018 and McGranahan, N. ORCID: https://orcid.org/0000-0001-9537-4045
Nature Genetics 57 (3): 694-705. March 2025

Using DNA sequencing data to quantify T cell fraction and therapy response.
Bentham, R., Litchfield, K., Watkins, T.B.K. ORCID: https://orcid.org/0000-0001-7414-737X, Lim, E.L., Rosenthal, R., Martínez-Ruiz, C., Hiley, C.T., Bakir, M.A., Salgado, R. ORCID: https://orcid.org/0000-0002-1110-3801, Moore, D.A., Jamal-Hanjani, M. ORCID: https://orcid.org/0000-0003-1212-1259, Swanton, C. ORCID: https://orcid.org/0000-0002-4299-3018 and McGranahan, N. ORCID: https://orcid.org/0000-0001-9537-4045
Nature 597 (7877): 555-560. 23 September 2021

SARS-CoV-2 in humans.
Binder, M. and Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806
Berliner und Munchener Tierarztliche Wochenschrift 134 : 1-13. 30 April 2021

Amplification of autoimmune organ damage by NKp46-activated ILC1.
Biniaris-Georgallis, S.I., Aschman, T., Stergioula, K., Schreiber, F., Jafari, V., Taranko, A., Karmalkar, T., Kasapi, A., Lenac Rovis, T., Jelencic, V., Bejarano, D.A., Fabry, L., Papacharalampous, M., Mattiola, I., Molgora, M., Hou, J., Hublitz, K.W., Heinrich, F., Guerra, G.M., Durek, P., Patone, G. ORCID: https://orcid.org/0000-0002-7242-0341, Lindberg, E.L.H. ORCID: https://orcid.org/0000-0002-2979-433X, Maatz, H. ORCID: https://orcid.org/0000-0002-9232-6272, Hölsken, O., Krönke, G., Mortha, A., Voll, R.E., Clarke, A.J., Hauser, A.E., Colonna, M., Thurley, K., Schlitzer, A., Schneider, C., Stamatiades, E.G., Mashreghi, M.F., Jonjic, S., Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223, Diefenbach, A., Kanda, M. ORCID: https://orcid.org/0000-0003-3468-3586 and Triantafyllopoulou, A.
Nature 634 (8035): 952-960. 24 October 2024

The C-terminus of α-synuclein regulates its dynamic cellular internalization by neurexin 1β.
Birol, M. ORCID: https://orcid.org/0000-0003-3397-8446, Douzoglou Muñoz, I.I. and Rhoades, E.
Molecular Biology of the Cell 34 (13): br21. 1 December 2023

Sox2 levels regulate the chromatin occupancy of WNT mediators in epiblast progenitors responsible for vertebrate body formation.
Blassberg, R. ORCID: https://orcid.org/0000-0001-8577-3544, Patel, H. ORCID: https://orcid.org/0000-0003-2707-7940, Watson, T., Gouti, M. ORCID: https://orcid.org/0000-0001-7422-1605, Metzis, V., Delás, M.J. ORCID: https://orcid.org/0000-0001-9727-9068 and Briscoe, J. ORCID: https://orcid.org/0000-0002-1020-5240
Nature Cell Biology 24 (5): 633-644. May 2022

Uncovering de novo gene birth in yeast using deep transcriptomics.
Blevins, W.R. ORCID: https://orcid.org/0000-0002-5222-2321, Ruiz-Orera, J. ORCID: https://orcid.org/0000-0002-8317-0034, Messeguer, X., Blasco-Moreno, B. ORCID: https://orcid.org/0000-0002-6373-6539, Villanueva-Cañas, J.L. ORCID: https://orcid.org/0000-0001-7445-1267, Espinar, L., Díez, J. ORCID: https://orcid.org/0000-0002-9013-0751, Carey, L.B. ORCID: https://orcid.org/0000-0002-7245-6379 and Albà, M.M. ORCID: https://orcid.org/0000-0002-7963-7375
Nature Communications 12 (1): 604. 27 January 2021

Endothelial overexpression of TGF-β-induced protein impairs venous thrombus resolution.
Bochenek, M.L., Saar, K. ORCID: https://orcid.org/0000-0002-4483-1557, Nazari-Jahantigh, M., Gogiraju, R., Wiedenroth, C.B., Münzel, T., Mayer, E., Fink, L., Schober, A., Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223, Guth, S., Konstantinides, S. and Schäfer, K. ORCID: https://orcid.org/0000-0003-0846-4718
JACC: Basic to Translational Science 9 (1): 100-116. January 2024

SLM2 is a novel cardiac splicing factor involved in heart failure due to dilated cardiomyopathy.
Boeckel, J.N. ORCID: https://orcid.org/0000-0002-7438-3089, Möbius-Winkler, M. ORCID: https://orcid.org/0000-0002-4400-3508, Müller, M. ORCID: https://orcid.org/0000-0002-8519-0661, Rebs, S. ORCID: https://orcid.org/0000-0002-9504-0261, Eger, N. ORCID: https://orcid.org/0000-0002-9488-4083, Schoppe, L. ORCID: https://orcid.org/0000-0003-0047-8760, Tappu, R. ORCID: https://orcid.org/0000-0003-0902-7114, Kokot, K.E. ORCID: https://orcid.org/0000-0002-8130-4289, Kneuer, J.M. ORCID: https://orcid.org/0000-0003-0273-3614, Gaul, S. ORCID: https://orcid.org/0000-0003-4780-1844, Bordalo, D.M., Lai, A. ORCID: https://orcid.org/0000-0003-0916-9227, Haas, J. ORCID: https://orcid.org/0000-0002-8040-8289, Ghanbari, M. ORCID: https://orcid.org/0000-0002-6015-2968, Drewe-Boss, P. ORCID: https://orcid.org/0000-0002-5459-9771, Liss, M. ORCID: https://orcid.org/0000-0002-0585-7850, Katus, H.A., Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116, Gotthardt, M. ORCID: https://orcid.org/0000-0003-1788-3172, Laufs, U. ORCID: https://orcid.org/0000-0003-2620-9323, Streckfuss-Bömeke, K. ORCID: https://orcid.org/0000-0001-5137-7228 and Meder, B. ORCID: https://orcid.org/0000-0003-0741-2633
Genomics Proteomics & Bioinformatics 20 (1): 129-146. February 2022

A proteomics analysis of 5xFAD mouse brain regions reveals the lysosome-associated protein Arl8b as a candidate biomarker for Alzheimer's disease.
Boeddrich, A. ORCID: https://orcid.org/0000-0001-9118-050X, Haenig, C. ORCID: https://orcid.org/0000-0003-1973-7646, Neuendorf, N., Blanc, E. ORCID: https://orcid.org/0000-0002-4369-0254, Ivanov, A. ORCID: https://orcid.org/0000-0002-4824-1925, Kirchner, M. ORCID: https://orcid.org/0000-0002-7049-534X, Schleumann, P., Bayraktaroğlu, I., Richter, M. ORCID: https://orcid.org/0000-0002-5339-0781, Molenda, C.M. ORCID: https://orcid.org/0000-0003-0771-405X, Sporbert, A. ORCID: https://orcid.org/0000-0002-3738-1295, Zenkner, M., Schnoegl, S., Suenkel, C. ORCID: https://orcid.org/0000-0002-5326-6043, Schneider, L.S., Rybak-Wolf, A. ORCID: https://orcid.org/0000-0002-1192-5290, Kochnowsky, B., Byrne, L.M., Wild, E.J., Nielsen, J.E., Dittmar, G. ORCID: https://orcid.org/0000-0003-3647-8623, Peters, O. ORCID: https://orcid.org/0000-0003-0568-2998, Beule, D. ORCID: https://orcid.org/0000-0002-3284-0632 and Wanker, E.E. ORCID: https://orcid.org/0000-0001-8072-1630
Genome Medicine 15 (1): 50. 20 July 2023

Rapid UPF1 depletion illuminates the temporal dynamics of the NMD-regulated human transcriptome.
Boehm, Volker, Wallmeroth, Damaris, Wulf, Paul O. ORCID: https://orcid.org/0009-0002-6356-2361, Popp, Oliver ORCID: https://orcid.org/0000-0001-6240-4666, Teixeira Alves, Luiz Gustavo ORCID: https://orcid.org/0000-0002-5822-4168, Reinecke, Lucie ORCID: https://orcid.org/0009-0003-7083-0923, Riedel, Maximilian ORCID: https://orcid.org/0009-0002-9817-3083, Wyler, Emanuel ORCID: https://orcid.org/0000-0002-9884-1806, Franitza, Marek, Becker, Kerstin, Polkovnychenko, Karina, Del Giudice, Simone ORCID: https://orcid.org/0000-0003-0194-3767, Benlasfer, Nouhad, Mertins, Philipp ORCID: https://orcid.org/0000-0002-2245-528X, Landthaler, Markus ORCID: https://orcid.org/0000-0002-1075-8734 and Gehring, Niels H.
Molecular Cell 85 (18): 3524-3546.e12. 18 September 2025

Inflammatory exposure drives long-lived impairment of hematopoietic stem cell self-renewal activity and accelerated aging.
Bogeska, R., Mikecin, A.M., Kaschutnig, P., Fawaz, M., Büchler-Schäff, M., Le, D., Ganuza, M., Vollmer, A., Paffenholz, S.V., Asada, N., Rodriguez-Correa, E., Frauhammer, F., Buettner, F., Ball, M., Knoch, J., Stäble, S., Walter, D., Petri, A., Carreño-Gonzalez, M.J., Wagner, V., Brors, B., Haas, S. ORCID: https://orcid.org/0000-0001-9227-2051, Lipka, D.B., Essers, M.A.G., Weru, V., Holland-Letz, T., Mallm, J.P., Rippe, K., Krämer, S., Schlesner, M., McKinney Freeman, S., Florian, M.C., King, K.Y., Frenette, P.S., Rieger, M.A. and Milsom, M.D.
Cell Stem Cell 29 (8): 1273-1284. 4 August 2022

Full-length spatial transcriptomics reveals the unexplored isoform diversity of the myocardium post-MI.
Boileau, E., Li, X., Naarmann-de Vries, I.S., Becker, C., Casper, R., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Leuschner, F. and Dieterich, C. ORCID: https://orcid.org/0000-0001-9468-6311
Frontiers in Genetics 13 : 912572. 22 July 2022

pTINCR microprotein promotes epithelial differentiation and suppresses tumor growth through CDC42 SUMOylation and activation.
Boix, O., Martinez, M., Vidal, S., Giménez-Alejandre, M., Palenzuela, L., Lorenzo-Sanz, L. ORCID: https://orcid.org/0000-0001-6477-2163, Quevedo, L. ORCID: https://orcid.org/0000-0001-8902-5818, Moscoso, O., Ruiz-Orera, J. ORCID: https://orcid.org/0000-0002-8317-0034, Ximénez-Embún, P. ORCID: https://orcid.org/0000-0002-2582-9443, Ciriaco, N., Nuciforo, P. ORCID: https://orcid.org/0000-0003-1380-0990, Stephan-Otto Attolini, C. ORCID: https://orcid.org/0000-0001-8045-320X, Albà, M.M., Muñoz, J. ORCID: https://orcid.org/0000-0003-3288-3496, Tian, T.V., Varela, I. ORCID: https://orcid.org/0000-0002-0969-506X, Vivancos, A., Ramón Y Cajal, S. ORCID: https://orcid.org/0000-0002-3867-1390, Muñoz, P., Rivas, C. ORCID: https://orcid.org/0000-0002-0518-7199 and Abad, M. ORCID: https://orcid.org/0000-0002-1462-2498
Nature Communications 13 (1): 6840. 11 November 2022

Small intestinal neuroendocrine tumors lack early genomic drivers, acquire DNA repair defects and harbor hallmarks of low REST expression.
Bolduan, F., Müller-Bötticher, N., Debnath, O. ORCID: https://orcid.org/0009-0009-2845-055X, Eichhorn, I., Giesecke, Y., Wetzel, A., Sahay, S., Zemojtel, T., Jaeger, M., Ungethuem, U., Roderburg, C., Kunze, C.A., Lehmann, A., Horst, D., Tacke, F., Eils, R., Wiedenmann, B., Sigal, M. ORCID: https://orcid.org/0000-0003-4772-0761 and Ishaque, N. ORCID: https://orcid.org/0000-0002-8426-901X
Scientific Reports 15 (1): 17969. 23 May 2025

Elevated sortilin expression discriminates functional from non-functional neuroendocrine tumors and enables therapeutic targeting.
Bolduan, F., Wetzel, A., Giesecke, Y., Eichhorn, I., Alenina, N. ORCID: https://orcid.org/0000-0002-6071-5433, Bader, M. ORCID: https://orcid.org/0000-0003-4780-4164, Willnow, T.E. ORCID: https://orcid.org/0000-0001-9515-7921, Wiedenmann, B. and Sigal, M. ORCID: https://orcid.org/0000-0003-4772-0761
Frontiers in Endocrinology 15 : 1331231. 17 April 2024

Transient stabilization of human cardiovascular progenitor cells from human pluripotent stem cells in vitro reflects stage-specific heart development in vivo.
Bolesani, E. ORCID: https://orcid.org/0000-0002-4237-2705, Bornhorst, D., Iyer, L.I., Zawada, D., Friese, N., Morgan, M., Lange, L., Gonzalez, D., Schrode, N., Leffler, A., Wunder, J., Franke, A., Drakhlis, L., Sebra, R., Schambach, A., Goedel, A., Dubois, N., Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416, Moretti, A., Zelarayán, L.C. ORCID: https://orcid.org/0000-0002-9001-0346, Abdelilah-Seyfried, S. ORCID: https://orcid.org/0000-0003-3183-3841 and Zweigerdt, R.
Cardiovascular Research 120 (11): 1295-1311. July 2024

Spatial transcriptomics unveils ZBTB11 as a regulator of cardiomyocyte degeneration in arrhythmogenic cardiomyopathy.
Boogerd, C.J. ORCID: https://orcid.org/0000-0002-7119-5381, Lacraz, G.P.A. ORCID: https://orcid.org/0000-0002-0373-3256, Vértesy, Á. ORCID: https://orcid.org/0000-0001-6075-5702, van Kampen, S.J. ORCID: https://orcid.org/0000-0002-4146-8481, Perini, I., de Ruiter, H., Versteeg, D., Brodehl, A. ORCID: https://orcid.org/0000-0001-9202-2343, van der Kraak, P., Giacca, M. ORCID: https://orcid.org/0000-0003-2927-7225, de Jonge, N., Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290, van Oudenaarden, A. ORCID: https://orcid.org/0000-0002-9442-3551, Vink, A. ORCID: https://orcid.org/0000-0002-9371-8788 and van Rooij, E. ORCID: https://orcid.org/0000-0002-2026-9408
Cardiovascular Research 119 (2): 477-491. February 2023

Single-cell time series analysis reveals the dynamics of HSPC response to inflammation.
Bouman, B.J. ORCID: https://orcid.org/0000-0003-1259-5040, Demerdash, Y., Sood, S., Grünschläger, F., Pilz, F., Itani, A.R. ORCID: https://orcid.org/0000-0001-7608-822X, Kuck, A., Marot-Lassauzaie, V. ORCID: https://orcid.org/0000-0002-8362-9634, Haas, S. ORCID: https://orcid.org/0000-0001-9227-2051, Haghverdi, L. ORCID: https://orcid.org/0000-0001-9280-9170 and Essers, M.A. ORCID: https://orcid.org/0000-0003-3117-1809
Life Science Alliance 7 (3): e202302309. March 2024

Proneural-mesenchymal hybrid glioblastoma cells are resistant to therapy and dependent on nuclear import.
Bourmeau, Guillaume ORCID: https://orcid.org/0000-0003-3800-4077, Anezo, Oceane, Raymond, Jeremy ORCID: https://orcid.org/0000-0002-8712-895X, Ballestín, Alberto ORCID: https://orcid.org/0000-0002-7150-9758, Pichol-Thievend, Cathy, Reveilles, Juliette ORCID: https://orcid.org/0000-0002-1307-2367, Thomas, Adrien, Wang, Lin, Miranda, Melanie, Moutaux, Eve, Liva, Stephane, Ribecco, Valentino ORCID: https://orcid.org/0000-0001-9348-4320, Besse, Laetitia, Dingli, Florent, Loew, Damarys ORCID: https://orcid.org/0000-0002-9111-8842, Vallot, Celine, Gargiulo, Gaetano ORCID: https://orcid.org/0000-0001-5414-4251, Ravi, Vidhya M. ORCID: https://orcid.org/0000-0003-0062-2099, Joseph, Kevin ORCID: https://orcid.org/0000-0001-6317-8736 and Seano, Giorgio ORCID: https://orcid.org/0000-0002-7294-302X
Neuro-Oncology 27 (11): 2876-2893. November 2025

Claudin-10a deficiency shifts proximal tubular Cl(-) permeability to cation selectivity via claudin-2 redistribution.
Breiderhoff, T. ORCID: https://orcid.org/0000-0002-1676-7498, Himmerkus, N. ORCID: https://orcid.org/0000-0002-2910-6728, Meoli, L. ORCID: https://orcid.org/0000-0002-9853-2624, Fromm, A. ORCID: https://orcid.org/0000-0003-4091-9612, Sewerin, S. ORCID: https://orcid.org/0000-0002-9094-9636, Kriuchkova, N. ORCID: https://orcid.org/0000-0002-9795-2440, Nagel, O. ORCID: https://orcid.org/0000-0001-6026-2676, Ladilov, Y. ORCID: https://orcid.org/0000-0002-9836-8801, Krug, S. ORCID: https://orcid.org/0000-0002-1293-2484, Quintanova, C. ORCID: https://orcid.org/0000-0001-6617-2006, Stumpp, M. ORCID: https://orcid.org/0000-0001-7765-2996, Garbe-Schönberg, D. ORCID: https://orcid.org/0000-0001-9006-9463, Westernströer, U., Merkel, C., Brinkhus, M., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Schweiger, M. ORCID: https://orcid.org/0000-0002-4672-0623, Mueller, D. ORCID: https://orcid.org/0000-0002-3478-1576, Mutig, K. ORCID: https://orcid.org/0000-0001-9006-5112, Morawski, M. ORCID: https://orcid.org/0000-0002-3817-5186, Halbritter, J. ORCID: https://orcid.org/0000-0002-1377-9880, Milatz, S. ORCID: https://orcid.org/0000-0001-9893-0473, Bleich, M. ORCID: https://orcid.org/0000-0002-1745-2295 and Günzel, D. ORCID: https://orcid.org/0000-0002-7998-7164
Journal of the American Society of Nephrology 33 (4): 699-717. April 2022

The histone H4 lysine 20 demethylase DPY-21 regulates the dynamics of condensin DC binding.
Breimann, L. ORCID: https://orcid.org/0000-0001-7702-5749, Morao, A.K. ORCID: https://orcid.org/0000-0003-2194-8071, Kim, J. ORCID: https://orcid.org/0000-0001-9473-3093, Jimenez, D.S. ORCID: https://orcid.org/0000-0003-0943-9063, Maryn, N. ORCID: https://orcid.org/0000-0002-0975-3354, Bikkasani, K. ORCID: https://orcid.org/0000-0002-4000-1863, Carrozza, M.J., Albritton, S.E. ORCID: https://orcid.org/0000-0001-6093-9560, Kramer, M. ORCID: https://orcid.org/0000-0002-1643-0756, Street, L.A. ORCID: https://orcid.org/0000-0002-5473-6713, Cerimi, K. ORCID: https://orcid.org/0000-0003-0775-3032, Schumann, V.F. ORCID: https://orcid.org/0000-0003-0227-7428, Bahry, E. ORCID: https://orcid.org/0000-0002-6358-2576, Preibisch, S. ORCID: https://orcid.org/0000-0002-0276-494X, Woehler, A. ORCID: https://orcid.org/0000-0001-5157-9313 and Ercan, S. ORCID: https://orcid.org/0000-0001-7297-1648
Journal of Cell Science 135 (2): jcs258818. January 2022

Optimization of synthetic molecular reporters for a mesenchymal glioblastoma transcriptional program by integer programming.
Breitenbach, T., Schmitt, M.J. ORCID: https://orcid.org/0000-0001-8296-5858 and Dandekar, T.
Bioinformatics 38 (17): 4162-4171. 1 September 2022

Nanozyme-catalysed CRISPR assay for preamplification-free detection of non-coding RNAs.
Broto, M. ORCID: https://orcid.org/0000-0002-4524-4290, Kaminski, M.M. ORCID: https://orcid.org/0000-0003-0429-7027, Adrianus, C., Kim, N. ORCID: https://orcid.org/0000-0002-3699-6458, Greensmith, R. ORCID: https://orcid.org/0000-0001-8142-0127, Dissanayake-Perera, S., Schubert, A.J. ORCID: https://orcid.org/0000-0002-6907-5276, Tan, X., Kim, H., Dighe, A.S., Collins, J.J. ORCID: https://orcid.org/0000-0002-5560-8246 and Stevens, M.M. ORCID: https://orcid.org/0000-0002-7335-266X
Nature Nanotechnology 17 (10): 1120-1126. October 2022

Rapid brain tumor classification from sparse epigenomic data.
Brändl, B. ORCID: https://orcid.org/0000-0003-1044-1355, Steiger, M. ORCID: https://orcid.org/0000-0002-3747-685X, Kubelt, C., Rohrandt, C., Zhu, Z. ORCID: https://orcid.org/0000-0003-3779-4265, Evers, M., Wang, G., Schuldt, B., Afflerbach, A.K., Wong, D., Lum, A., Halldorsson, S., Djirackor, L., Leske, H., Magadeeva, S., Smičius, R., Quedenau, C. ORCID: https://orcid.org/0000-0002-6846-4915, Schmidt, N.O., Schüller, U. ORCID: https://orcid.org/0000-0002-8731-1121, Vik-Mo, E.O. ORCID: https://orcid.org/0000-0001-8303-4123, Proescholdt, M., Riemenschneider, M.J., Zadeh, G. ORCID: https://orcid.org/0000-0002-6637-4502, Ammerpohl, O., Yip, S. ORCID: https://orcid.org/0000-0002-8514-9861, Synowitz, M., van Bömmel, A. ORCID: https://orcid.org/0000-0002-8434-8586, Kretzmer, H. ORCID: https://orcid.org/0000-0002-0723-4980 and Müller, F.J. ORCID: https://orcid.org/0000-0001-9478-8430
Nature Medicine 31 (3): 840-848. March 2025

Mitochondrial respiratory chain function promotes extracellular matrix integrity in cartilage.
Bubb, K., Holzer, T., Nolte, J.L., Krüger, M. ORCID: https://orcid.org/0000-0002-5846-6941, Wilson, R. ORCID: https://orcid.org/0000-0003-0152-4394, Schlötzer-Schrehardt, U., Brinckmann, J., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Aszodi, A., Fleischhauer, L., Clausen-Schaumann, H. ORCID: https://orcid.org/0000-0002-9413-0310, Probst, K. and Brachvogel, B. ORCID: https://orcid.org/0000-0002-3923-0554
Journal of Biological Chemistry 297 (4): 101224. October 2021

Coordinated IFN-γ/TNF axis drives selective loss of activated enteric glia in inflammatory bowel diseases.
Bubeck, Marvin, Penkert, Klara A. ORCID: https://orcid.org/0000-0002-9948-533X, Limberger, Heidi, González Acera, Miguel, Plattner, Christina, Ziegler, Svenja, Muppirala, Anoohya, Forster, Patrycja, Jakob, Manuel, Gamez-Belmonte, Reyes, Erkert, Lena, Kulkarni, Subhash, Günther, Claudia, Atreya, Raja, Kühl, Anja A., Hegazy, Ahmed N., Hildner, Kai, Trajanoski, Zlatko, Siegmund, Britta, Neurath, Markus F., Rao, Meenakshi, Progatzky, Fränze, Lie, Dieter Chichung, Becker, Christoph, Romagnani, Chiara, Ludwig, Leif S. ORCID: https://orcid.org/0000-0002-2916-2164, Klose, Christoph S.N. and Patankar, Jay V.
Cellular and Molecular Gastroenterology and Hepatology : 101827. 12 June 2026 (In Press)

Systematic identification of A-to-I RNA editing in zebrafish development and adult organs.
Buchumenski, I., Holler, K. ORCID: https://orcid.org/0000-0002-5159-9223, Appelbaum, L. ORCID: https://orcid.org/0000-0002-9248-5919, Eisenberg, E. ORCID: https://orcid.org/0000-0001-8681-3202, Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290 and Levanon, E.Y. ORCID: https://orcid.org/0000-0002-3641-4198
Nucleic Acids Research 49 (8): 4325-4337. 7 May 2021

European and multi-ancestry genome-wide association meta-analysis of atopic dermatitis highlights importance of systemic immune regulation.
Budu-Aggrey, A. ORCID: https://orcid.org/0000-0002-8911-2492, Kilanowski, A. ORCID: https://orcid.org/0000-0001-5328-6274, Sobczyk, M.K. ORCID: https://orcid.org/0000-0003-0000-4100, Shringarpure, S.S. ORCID: https://orcid.org/0000-0001-6464-2668, Mitchell, R. ORCID: https://orcid.org/0000-0002-3506-160X, Reis, K. ORCID: https://orcid.org/0000-0002-2144-5856, Reigo, A., Mägi, R. ORCID: https://orcid.org/0000-0002-2964-6011, Nelis, M., Tanaka, N. ORCID: https://orcid.org/0000-0002-2085-4682, Brumpton, B.M. ORCID: https://orcid.org/0000-0002-3058-1059, Thomas, L.F. ORCID: https://orcid.org/0000-0003-0548-2486, Sole-Navais, P. ORCID: https://orcid.org/0000-0002-3326-266X, Flatley, C., Espuela-Ortiz, A. ORCID: https://orcid.org/0000-0003-0572-9549, Herrera-Luis, E. ORCID: https://orcid.org/0000-0003-4150-5454, Lominchar, J.V.T., Bork-Jensen, J., Marenholz, I. ORCID: https://orcid.org/0009-0007-6933-3849, Arnau-Soler, A. ORCID: https://orcid.org/0000-0001-9768-0513, Jeong, A. 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ORCID: https://orcid.org/0000-0003-2003-1018, Curtin, J., Simpson, A., Murray, C. ORCID: https://orcid.org/0000-0002-8961-8055, Schikowski, T., Bunyavanich, S. ORCID: https://orcid.org/0000-0001-6108-439X, Weiss, S.T., Holloway, J.W. ORCID: https://orcid.org/0000-0001-9998-0464, Min, J.L. ORCID: https://orcid.org/0000-0003-4456-9824, Brown, S.J., Standl, M. ORCID: https://orcid.org/0000-0002-5345-2049 and Paternoster, L. ORCID: https://orcid.org/0000-0003-2514-0889
Nature Communications 14 (1): 6172. 4 October 2023

Generation of decellularized human brain tissue for investigating cell-matrix interactions: a proof-of-concept study.
Bueno, R.J., Fernández-Zapata, C., Salla, M. ORCID: https://orcid.org/0009-0003-8453-2935, Campo Garcia, J., Alacam, A., Klein, O., Böttcher, C. ORCID: https://orcid.org/0000-0002-6226-586X, Radbruch, H. ORCID: https://orcid.org/0000-0001-6941-3397, Paul, F. ORCID: https://orcid.org/0000-0002-6378-0070, Starossom, S.C. ORCID: https://orcid.org/0000-0001-7935-9910, Silva, R.V. ORCID: https://orcid.org/0000-0002-8687-2154 and Infante-Duarte, C. ORCID: https://orcid.org/0000-0003-3005-351X
Frontiers in Bioengineering and Biotechnology 13 : 1578467. 5 June 2025

The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression.
Bujanic, L., Shevchuk, O., von Kügelgen, N. ORCID: https://orcid.org/0000-0001-8116-9032, Kalinina, A., Ludwik, K. ORCID: https://orcid.org/0000-0002-9436-7270, Koppstein, D. ORCID: https://orcid.org/0000-0002-8618-7237, Zerna, N., Sickmann, A. and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
RNA 28 (5): 766-779. May 2022

Copy-number dosage regulates telomere maintenance and disease-associated pathways in neuroblastoma.
Burkert, M. ORCID: https://orcid.org/0000-0002-6721-9985, Blanc, E. ORCID: https://orcid.org/0000-0002-4369-0254, Thiessen, N., Weber, C., Toedling, J. ORCID: https://orcid.org/0000-0003-1471-1295, Monti, R. ORCID: https://orcid.org/0000-0002-6354-8319, Dombrowe, V.M. ORCID: https://orcid.org/0000-0002-1466-1518, de Biase, M.S. ORCID: https://orcid.org/0000-0003-0383-5161, Kaufmann, T.L. ORCID: https://orcid.org/0000-0003-4374-1338, Haase, K. ORCID: https://orcid.org/0000-0002-0944-5618, Waszak, S.M., Eggert, A., Beule, D. ORCID: https://orcid.org/0000-0002-3284-0632, Schulte, J.H. ORCID: https://orcid.org/0000-0003-0671-1201, Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116 and Schwarz, R.F. ORCID: https://orcid.org/0000-0001-9155-4268
iScience 27 (10): 110918. 18 October 2024

Mutation-induced LZTR1 polymerization provokes cardiac pathology in recessive Noonan syndrome.
Busley, A.V., Gutiérrez-Gutiérrez, Ó., Hammer, E., Koitka, F., Mirzaiebadizi, A., Steinegger, M., Pape, C., Böhmer, L., Schroeder, H., Kleinsorge, M., Engler, M., Cirstea, I.C., Gremer, L., Willbold, D., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Marbach, F., Hasenfuss, G., Zimmermann, W.H., Ahmadian, M.R., Wollnik, B. and Cyganek, L.
Cell Reports 43 (7): 114448. 23 July 2024

SEC24C deficiency causes trafficking and glycosylation abnormalities in an epileptic encephalopathy with cataracts and dyserythropoeisis.
Bögershausen, N., Cavdarli, B., Nagai, T., Milev, M.P., Wolff, A., Mehranfar, M., Schmidt, J., Choudhary, D., Gutiérrez-Gutiérrez, Ó., Cyganek, L., Saint-Dic, D., Zibat, A., Köhrer, K., Wollenweber, T.E., Wieczorek, D., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Borodina, T. ORCID: https://orcid.org/0000-0002-6978-016X, Kaçar, D., Haliloğlu, G., Li, Y., Thiel, C., Sacher, M., Knapik, E.W., Yigit, G. and Wollnik, B.
JCI Insight 10 (9): e173484. 8 May 2025

WARS1 and SARS1: two tRNA synthetases implicated in autosomal recessive microcephaly.
Bögershausen, N., Krawczyk, H.E., Jamra, R.A., Lin, S.J. ORCID: https://orcid.org/0000-0002-7559-6529, Yigit, G., Hüning, I., Polo, A.M., Vona, B. ORCID: https://orcid.org/0000-0002-6719-3447, Huang, K., Schmidt, J., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Luppe, J., Platzer, K., Dörgeloh, B.B., Busche, A., Biskup, S., Mendes, M.I., Smith, D.E.C., Salomons, G.S., Zibat, A., Bültmann, E., Nürnberg, P., Spielmann, M., Lemke, J.R., Li, Y., Zenker, M. ORCID: https://orcid.org/0000-0003-1618-9269, Varshney, G.K., Hillen, H.S., Kratz, C.P. and Wollnik, B.
Human Mutation 43 (10): 1454-1471. October 2022

Single cell biology - a Keystone Symposia report.
Cable, J., Elowitz, M.B., Domingos, A.I., Habib, N., Itzkovitz, S., Hamidzada, H., Balzer, M.S., Yanai, I., Liberali, P., Whited, J., Streets, A., Cai, L., Stergachis, A.B., Hong, C.K.Y., Keren, L., Guilliams, M., Alon, U., Shalek, A.K., Hamel, R., Pfau, S.J., Raj, A., Quake, S.R., Zhang, N.R., Fan, J., Trapnell, C., Wang, B., Greenwald, N.F., Vento-Tormo, R., Santos, S.D.M., Spencer, S.L., Garcia, H.G., Arekatla, G., Gaiti, F., Arbel-Goren, R., Rulands, S., Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290, Klein, A.M., Morris, S.A., Murray, J.I., Galloway, K.E., Ratz, M. and Romeike, M.
Annals of the New York Academy of Sciences 1506 (1): 74-97. December 2021

Organoids as tools for fundamental discovery and translation - a Keystone Symposia report.
Cable, J., Lutolf, M.P., Fu, J., Park, S.E., Apostolou, A., Chen, S., Song, C.J., Spence, J.R., Liberali, P., Lancaster, M., Meier, A.B., Pek, N.M.Q., Wells, J.M., Capeling, M.M., Uzquiano, A., Musah, S., Huch, M., Gouti, M. ORCID: https://orcid.org/0000-0001-7422-1605, Hombrink, P., Quadrato, G. and Urenda, J.P.
Annals of the New York Academy of Sciences 1518 (1): 196-208. December 2022

DDX3 depletion represses translation of mRNAs with complex 5' UTRs.
Calviello, L. ORCID: https://orcid.org/0000-0002-5600-0988, Venkataramanan, S. ORCID: https://orcid.org/0000-0002-2507-401X, Rogowski, K.J. ORCID: https://orcid.org/0000-0002-9634-7353, Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Wilkins, K., Tejura, M., Thai, B., Krol, J., Filipowicz, W., Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734 and Floor, S.N. ORCID: https://orcid.org/0000-0002-9965-9694
Nucleic Acids Research 49 (9): 5336-5350. May 2021

Microproteins encoded by noncanonical ORFs are a major source of tumor-specific antigens in a liver cancer patient meta-cohort.
Camarena, M.E. ORCID: https://orcid.org/0000-0001-9319-6388, Theunissen, P. ORCID: https://orcid.org/0000-0002-6009-3574, Ruiz, M., Ruiz-Orera, J. ORCID: https://orcid.org/0000-0002-8317-0034, Calvo-Serra, B. ORCID: https://orcid.org/0000-0002-7614-396X, Castelo, R. ORCID: https://orcid.org/0000-0003-2229-4508, Castro, C. ORCID: https://orcid.org/0009-0006-6825-2329, Sarobe, P., Fortes, P. ORCID: https://orcid.org/0000-0001-7571-6220, Perera-Bel, J. ORCID: https://orcid.org/0000-0002-6809-132X and Albà, M.M.
Science Advances 10 (28): eadn3628. July 2024

Intramyocardial sprouting tip cells specify coronary arterialization.
Cano, E. ORCID: https://orcid.org/0000-0003-1091-8934, Schwarzkopf, J. ORCID: https://orcid.org/0000-0001-9552-0794, Kanda, M. ORCID: https://orcid.org/0000-0003-3468-3586, Lindberg, E.L. ORCID: https://orcid.org/0000-0002-2979-433X, Hollfinger, I. ORCID: https://orcid.org/0000-0002-6233-8395, Pogontke, C. ORCID: https://orcid.org/0000-0002-9610-9822, Braeuning, C. ORCID: https://orcid.org/0009-0007-1439-9920, Fischer, C. ORCID: https://orcid.org/0000-0003-0329-2435, Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223 and Gerhardt, H. ORCID: https://orcid.org/0000-0002-3030-0384
Circulation Research 135 (6): 671-684. 30 August 2024

Integrated left ventricular multi-omics landscape of human cardiometabolic HFpEF.
Capone, Federico ORCID: https://orcid.org/0000-0001-8127-5564, Rommel, Karl-Philipp, Forbes, Martin ORCID: https://orcid.org/0000-0001-7775-8352, Fahjen, Pauline ORCID: https://orcid.org/0000-0002-5015-0643, Strocchi, Stefano ORCID: https://orcid.org/0009-0002-8879-6156, Rosch, Sebastian, Wang, Rongling ORCID: https://orcid.org/0000-0001-8719-938X, Bode, David, Nambiar, Natasha ORCID: https://orcid.org/0009-0004-3538-8081, Eroglu, Tolga ORCID: https://orcid.org/0000-0003-3404-2754, Santiago-Padilla, Leandro ORCID: https://orcid.org/0000-0002-0873-7205, Morieri, Mario Luca, Liu, Luo, Farrelly, Catherine, Vacca, Antonio ORCID: https://orcid.org/0000-0003-0051-7723, Mastrobuoni, Guido ORCID: https://orcid.org/0000-0003-4509-1295, Jung, Simone, Diezel, Saskia A., Liévano Contreras, Sarah V., Hübner, Norbert ORCID: https://orcid.org/0000-0002-1218-6223, Mertins, Philipp ORCID: https://orcid.org/0000-0002-2245-528X, Kempa, Stefan ORCID: https://orcid.org/0000-0002-0696-9299, Lurz, Philipp and Schiattarella, Gabriele G. ORCID: https://orcid.org/0000-0002-7582-7171
Cardiovascular Research 122 (8): 984-1000. May 2026

Antigen presentation plays positive roles in the regenerative response to cardiac injury in zebrafish.
Cardeira-da-Silva, J. ORCID: https://orcid.org/0000-0003-3722-8810, Wang, Q., Sagvekar, P. ORCID: https://orcid.org/0000-0003-4420-3806, Mintcheva, J. ORCID: https://orcid.org/0000-0003-0793-6277, Latting, S., Günther, S. ORCID: https://orcid.org/0000-0002-5594-4549, Ramadass, R., Yekelchyk, M., Preussner, J., Looso, M., Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290 and Stainier, D.Y.R.
Nature Communications 15 (1): 3637. 29 April 2024

Ecological factors influence balancing selection on leaf chemical profiles of a wildflower.
Carley, L.N. ORCID: https://orcid.org/0000-0003-1911-7025, Mojica, J.P., Wang, B., Chen, C.Y. ORCID: https://orcid.org/0000-0003-1765-7132, Lin, Y.P. ORCID: https://orcid.org/0000-0002-9575-2007, Prasad, K.V.S.K ORCID: https://orcid.org/0000-0002-9518-2104, Chan, E., Hsu, C.W. ORCID: https://orcid.org/0000-0003-3709-9748, Keith, R., Nuñez, C.L. ORCID: https://orcid.org/0000-0002-3273-6966, Olson-Manning, C.F. ORCID: https://orcid.org/0000-0001-8054-3889, Rushworth, C.A. ORCID: https://orcid.org/0000-0003-0715-1234, Wagner, M.R. ORCID: https://orcid.org/0000-0002-6924-7226, Wang, J., Yeh, P.M. ORCID: https://orcid.org/0000-0002-3902-6115, Reichelt, M. ORCID: https://orcid.org/0000-0002-6691-6500, Ghattas, K., Gershenzon, J. ORCID: https://orcid.org/0000-0002-1812-1551, Lee, C.R. ORCID: https://orcid.org/0000-0002-1913-9964 and Mitchell-Olds, T. ORCID: https://orcid.org/0000-0003-3439-9921
Nature Ecology & Evolution 5 : 1135-1144. August 2021

Proteomic signatures improve risk prediction for common and rare diseases.
Carrasco-Zanini, J. ORCID: https://orcid.org/0000-0002-3988-7505, Pietzner, M. ORCID: https://orcid.org/0000-0003-3437-9963, Davitte, J., Surendran, P., Croteau-Chonka, D.C. ORCID: https://orcid.org/0000-0003-3466-1846, Robins, C., Torralbo, A., Tomlinson, C. ORCID: https://orcid.org/0000-0002-0903-5395, Grünschläger, F., Fitzpatrick, N., Ytsma, C. ORCID: https://orcid.org/0000-0002-8333-6428, Kanno, T., Gade, S., Freitag, D., Ziebell, F., Haas, S. ORCID: https://orcid.org/0000-0001-9227-2051, Denaxas, S., Betts, J.C., Wareham, N.J. ORCID: https://orcid.org/0000-0003-1422-2993, Hemingway, H. ORCID: https://orcid.org/0000-0003-2279-0624, Scott, R.A. ORCID: https://orcid.org/0000-0003-3634-3016 and Langenberg, C. ORCID: https://orcid.org/0000-0002-5017-7344
Nature Medicine 30 (9): 2489-2498. September 2024

The matrix metalloproteinase ADAM10 supports hepatitis C virus entry and cell-to-cell spread via its sheddase activity.
Carriquí-Madroñal, B. ORCID: https://orcid.org/0000-0002-0640-3041, Sheldon, J., Duven, M., Stegmann, C., Cirksena, K., Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Zapatero-Belinchón, F.J., Vondran, F.W.R. and Gerold, G. ORCID: https://orcid.org/0000-0002-1326-5038
PLoS Pathogens 19 (11): e1011759. 15 November 2023

SRRM2 splicing factor modulates cell fate in early development.
Carvalho, S. ORCID: https://orcid.org/0000-0001-6436-205X, Zea-Redondo, L. ORCID: https://orcid.org/0000-0001-9064-9126, Tang, T.C.C., Stachel-Braum, P., Miller, D. ORCID: https://orcid.org/0000-0001-9852-677X, Caldas, P., Kukalev, A. ORCID: https://orcid.org/0000-0001-5847-3773, Diecke, S. ORCID: https://orcid.org/0000-0002-5219-5992, Grosswendt, S. ORCID: https://orcid.org/0000-0001-7722-2937, Grosso, A.R. and Pombo, A. ORCID: https://orcid.org/0000-0002-7493-6288
Biology Open 13 (4): bio060415. April 2024

Novel non-coding FOXP3 transcript isoform associated to potential transcriptional interference in human regulatory T cells.
Cases, M., Ritter, N., Rincon-Arevalo, H., Kroh, S., Adam, A., Kirchner, M. ORCID: https://orcid.org/0000-0002-7049-534X, Moradian, H., Gossen, M. ORCID: https://orcid.org/0000-0002-1761-4063, Dzamukova, M., Manukyan, A. ORCID: https://orcid.org/0000-0002-0441-9517, Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734, Kressler, C., Hauser, A.E., Depledge, D.P., Polansky, J.K. and Chang, H.D.
RNA Biology 22 (1): 1-20. 2 July 2025

miR-7 controls glutamatergic transmission and neuronal connectivity in a Cdr1as-dependent manner.
Cerda Jara, C.A. ORCID: https://orcid.org/0000-0003-1783-5533, Kim, S.J. ORCID: https://orcid.org/0000-0001-8357-0073, Thomas, G., Farsi, Z. ORCID: https://orcid.org/0000-0001-7274-981X, Zolotarov, G. ORCID: https://orcid.org/0000-0002-3971-3070, Dube, G., Deter, A., Bahry, E. ORCID: https://orcid.org/0000-0002-6358-2576, Georgii, E., Woehler, A. ORCID: https://orcid.org/0000-0001-5157-9313, Piwecka, M. ORCID: https://orcid.org/0000-0003-4104-6577 and Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332
EMBO Reports 25 (7): 3039. July 2024

Compound-SNE: comparative alignment of t-SNEs for multiple single-cell omics data visualization.
Cess, C.G. ORCID: https://orcid.org/0000-0002-1398-2846 and Haghverdi, L. ORCID: https://orcid.org/0000-0001-9280-9170
Bioinformatics 40 (7): btae471. July 2024

Parallel sequencing of extrachromosomal circular DNAs and transcriptomes in single cancer cells.
Chamorro González, R. ORCID: https://orcid.org/0000-0002-5653-7259, Conrad, T. ORCID: https://orcid.org/0000-0001-5618-6295, Stöber, M.C. ORCID: https://orcid.org/0000-0002-6679-5577, Xu, R. ORCID: https://orcid.org/0000-0002-5618-246X, Giurgiu, M. ORCID: https://orcid.org/0000-0001-5007-7442, Rodriguez-Fos, E. ORCID: https://orcid.org/0000-0002-2555-0178, Kasack, K., Brückner, L. ORCID: https://orcid.org/0000-0002-6155-2277, van Leen, E., Helmsauer, K. ORCID: https://orcid.org/0000-0003-0773-4114, Dorado Garcia, H. ORCID: https://orcid.org/0000-0002-2578-3350, Stefanova, M.E. ORCID: https://orcid.org/0000-0002-4419-2839, Hung, K.L. ORCID: https://orcid.org/0000-0002-3662-4662, Bei, Y. ORCID: https://orcid.org/0000-0002-2104-8025, Schmelz, K., Lodrini, M., Mundlos, S., Chang, H.Y. ORCID: https://orcid.org/0000-0002-9459-4393, Deubzer, H.E. ORCID: https://orcid.org/0000-0002-6115-4893, Sauer, S. ORCID: https://orcid.org/0000-0002-4794-3693, Eggert, A. ORCID: https://orcid.org/0000-0003-3476-8184, Schulte, J.H. ORCID: https://orcid.org/0000-0003-0671-1201, Schwarz, R.F. ORCID: https://orcid.org/0000-0001-9155-4268, Haase, K. ORCID: https://orcid.org/0000-0002-0944-5618, Koche, R.P. ORCID: https://orcid.org/0000-0002-6820-5083 and Henssen, A.G. ORCID: https://orcid.org/0000-0003-1534-778X
Nature Genetics 55 (5): 880-890. May 2023

XPF interacts with TOP2B for R-loop processing and DNA looping on actively transcribed genes.
Chatzinikolaou, G. ORCID: https://orcid.org/0000-0002-0868-0683, Stratigi, K. ORCID: https://orcid.org/0000-0001-7476-6410, Siametis, A. ORCID: https://orcid.org/0000-0003-0668-7563, Goulielmaki, E. ORCID: https://orcid.org/0000-0003-1651-3137, Akalestou-Clocher, A. ORCID: https://orcid.org/0000-0002-1267-6054, Tsamardinos, I. ORCID: https://orcid.org/0000-0002-2492-959X, Topalis, P. ORCID: https://orcid.org/0000-0002-1635-4810, Austin, C., Bouwman, B.A.M. ORCID: https://orcid.org/0000-0002-9827-9497, Crosetto, N., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521 and Garinis, G.A. ORCID: https://orcid.org/0000-0002-3200-5004
Science Advances 9 (45): eadi2095. 10 November 2023

Genome-wide CRISPR screen in human T cells reveals regulators of FOXP3.
Chen, K.Y., Kibayashi, T., Giguelay, A. ORCID: https://orcid.org/0000-0003-0417-1109, Hata, M., Nakajima, S., Mikami, N., Takeshima, Y., Ichiyama, K., Omiya, R., Ludwig, L.S. ORCID: https://orcid.org/0000-0002-2916-2164, Hattori, K. and Sakaguchi, S.
Nature 642 (8066): 191-200. 5 June 2025

Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells.
Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Abraham, Alex ORCID: https://orcid.org/0000-0003-3533-6543, Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Fontana, A. ORCID: https://orcid.org/0009-0004-1996-4800, Vercellone, F. ORCID: https://orcid.org/0000-0003-3933-8458, Conte, M. ORCID: https://orcid.org/0000-0002-6670-9800 and Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416
Nature Communications 15 (1): 4014. 13 May 2024

An expanded reference catalog of translated open reading frames for biomedical research.
Chothani, Sonia, Ruiz-Orera, Jorge ORCID: https://orcid.org/0000-0002-8317-0034, Tierney, Jack A.S., Swirski, Michal I., Tjeldnes, Hakon, Kok, Leron W., Clauwaert, Jim, Deutsch, Eric W., Alba, M. Mar, Aspden, Julie L., Baranov, Pavel V., Bazzini, Ariel Alejandro, Bruford, Elspeth A., Brunet, Marie A., Cardon, Tristan, Carvunis, Anne-Ruxandra, Casola, Claudio, Choudhary, Jyoti Sharma, Dean, Kellie, Faridi, Pouya, Fierro-Monti, Ivo, Fournier, Isabelle, Frankish, Adam, Gerstein, Mark, Hubner, Norbert ORCID: https://orcid.org/0000-0002-1218-6223, Jiang, Yunzhe, Kellis, Manolis, Martinez, Thomas F., Menschaert, Gerben, Ni, Pengyu, Orchard, Sandra, Roucou, Xavier, Rozowsky, Joel, Salzet, Michel, Siragusa, Mauro, Slavoff, Sarah, Ternette, Nicola, Vizcaino, Juan Antonio, Wacholder, Aaron, Wu, Wei, Xie, Zhi, Yang, Yucheng T., Moritz, Robert L., Valen, Eivind, Mudge, Jonathan, van Heesch, Sebastiaan ORCID: https://orcid.org/0000-0001-9593-1980, Prensner, John R. and Rackham, Owen J.L.
Nucleic Acids Research 54 (6): gkag234. 13 April 2026

A high-resolution map of human RNA translation.
Chothani, S.P., Adami, E. ORCID: https://orcid.org/0000-0002-1813-6681, Widjaja, A.A., Langley, S.R., Viswanathan, S., Pua, C.J., Zhihao, N.T., Harmston, N., D'Agostino, G., Whiffin, N., Mao, W., Ouyang, J.F., Lim, W.W., Lim, S., Lee, C.Q.E., Grubman, A., Chen, J., Kovalik, J.P., Tryggvason, K., Polo, J.M., Ho, L., Cook, S.A., Rackham, O.J.L. and Schafer, S.
Molecular Cell 82 (15): 2885-2899.e8. 4 August 2022

A novel complex genomic rearrangement affecting the KCNJ2 regulatory region causes a variant of Cooks syndrome.
Cinque, L., Micale, L., Manara, E., Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Palumbo, O., Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Guerri, G., Bertelli, M., Giuffrida, M.G., Bernardini, L., Notarangelo, A., Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416 and Castori, M.
Human Genetics 141 (2): 217-227. February 2022

Logical design of synthetic cis-regulatory DNA for genetic tracing of cell identities and state changes.
Company, C. ORCID: https://orcid.org/0000-0002-7975-0642, Schmitt, M.J. ORCID: https://orcid.org/0000-0001-8296-5858, Dramaretska, Y. ORCID: https://orcid.org/0000-0002-9792-0465, Serresi, M. ORCID: https://orcid.org/0000-0001-6839-8658, Kertalli, S., Jiang, B. ORCID: https://orcid.org/0000-0002-5862-5471, Yin, J.A. ORCID: https://orcid.org/0000-0002-2134-8693, Aguzzi, A. ORCID: https://orcid.org/0000-0002-0344-6708, Barozzi, I. ORCID: https://orcid.org/0000-0003-0690-3473 and Gargiulo, G. ORCID: https://orcid.org/0000-0001-5414-4251
Nature Communications 15 (1): 897. 5 February 2024

Physics-based polymer models to probe chromosome structure in single molecules.
Conte, M. ORCID: https://orcid.org/0000-0002-6670-9800, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Abraham, A. and Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416
Methods in Molecular Biology 2655 : 57-66. 2023

Dynamic and equilibrium properties of finite-size polymer models of chromosome folding.
Conte, M. ORCID: https://orcid.org/0000-0002-6670-9800, Fiorillo, L., Annunziatella, C., Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Musella, F., Abraham, A., Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X and Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167
Physical Review E 104 (5): 054402. 10 November 2021

A polymer physics model to dissect genome organization in healthy and pathological phenotypes.
Conte, M. ORCID: https://orcid.org/0000-0002-6670-9800, Fiorillo, L., Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Musella, F., Flora, F., Abraham, A. and Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416
Methods in Molecular Biology 2301 : 307-316. 2022

Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding.
Conte, M. ORCID: https://orcid.org/0000-0002-6670-9800, Irani, E. ORCID: https://orcid.org/0000-0002-8194-960X, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Abraham, A., Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439 and Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416
Nature Communications 13 (1): 4070. 13 July 2022

Combining callers improves the detection of copy number variants from whole-genome sequencing.
Coutelier, M. ORCID: https://orcid.org/0000-0002-0261-7210, Holtgrewe, M. ORCID: https://orcid.org/0000-0002-3051-1763, Jäger, M., Flöttman, R., Mensah, M.A. ORCID: https://orcid.org/0000-0001-8080-8779, Spielmann, M., Krawitz, P. ORCID: https://orcid.org/0000-0002-3194-8625, Horn, D., Beule, D. ORCID: https://orcid.org/0000-0002-3284-0632 and Mundlos, S. ORCID: https://orcid.org/0000-0002-9788-3166
European Journal of Human Genetics 30 (2): 178-186. February 2022

Mapping CD4+ T cell diversity in CSF to identify endophenotypes of multiple sclerosis.
Crowley, T., Chen, J. ORCID: https://orcid.org/0000-0002-4355-4121, Rosiewicz, K.S. ORCID: https://orcid.org/0000-0002-6926-7227, Jopp-Saile, L. ORCID: https://orcid.org/0000-0002-7032-3003, Herold, G., Biese, C., Fischer, C. ORCID: https://orcid.org/0000-0003-0329-2435, Kerkering, J. ORCID: https://orcid.org/0000-0002-6432-7104, Alisch, M. ORCID: https://orcid.org/0009-0000-8316-6193, Paul, F. ORCID: https://orcid.org/0000-0002-6378-0070 and Siffrin, V. ORCID: https://orcid.org/0000-0002-1532-2868
Brain Communications 7 (3): fcaf231. 19 June 2025

Association of the human gut microbiota with vascular stiffness.
Cuadrat, R.R.C. ORCID: https://orcid.org/0000-0001-8289-2599, Goris, T., Birukov, A., Eichelmann, F., Andrade, B.G.N., Bang, C., Franke, A., Wittenbecher, C. and Schulze, M.B.
Scientific Reports 13 (1): 13348. 16 August 2023

Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation.
Cuadrat, R.R.C. ORCID: https://orcid.org/0000-0001-8289-2599, Kratzer, A. ORCID: https://orcid.org/0000-0002-6151-5097, Arnal, H.G. ORCID: https://orcid.org/0000-0002-5763-9388, Rathgeber, A.C. ORCID: https://orcid.org/0000-0003-3264-1040, Wreczycka, K. ORCID: https://orcid.org/0000-0002-5994-4802, Blume, A. ORCID: https://orcid.org/0000-0003-3045-8234, Gündüz, I.B. ORCID: https://orcid.org/0000-0003-2641-0916, Ebenal, V., Mauno, T., Osberg, B. ORCID: https://orcid.org/0000-0002-9854-9901, Moobed, M., Hartung, J., Jakobs, K., Seppelt, C. ORCID: https://orcid.org/0000-0003-4892-6809, Meteva, D. ORCID: https://orcid.org/0000-0003-4741-924X, Haghikia, A. ORCID: https://orcid.org/0000-0001-5568-8808, Leistner, D.M., Landmesser, Ulf ORCID: https://orcid.org/0000-0002-0214-3203 and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
NAR Genomics and Bioinformatics 5 (2): lqad061. June 2023

Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p.Arg14del mutation.
Cuello, F. ORCID: https://orcid.org/0000-0003-1612-1715, Knaust, A.E., Saleem, U., Loos, M., Raabe, J., Mosqueira, D. ORCID: https://orcid.org/0000-0002-2306-3915, Laufer, S., Schweizer, M., Kraak, P., Flenner, F., Ulmer, B.M, Braren, I., Yin, X., Theofilatos, K., Ruiz-Orera, J. ORCID: https://orcid.org/0000-0002-8317-0034, Patone, G. ORCID: https://orcid.org/0000-0002-7242-0341, Klampe, B., Schulze, T., Piasecki, A., Pinto, Y., Vink, A., Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223, Harding, S., Mayr, M., Denning, C., Eschenhagen, T. and Hansen, A. ORCID: https://orcid.org/0000-0003-2628-0453
EMBO Molecular Medicine 13 (6): e13074. 7 June 2021