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2018

On the relation between filament density, force generation and protrusion rate in mesenchymal cell motility.
Dolati, S. and Kage, F. and Mueller, J. and Müsken, M. and Kirchner, M. and Dittmar, G. and Sixt, M. and Rottner, K. and Falcke, M.
Molecular Biology of the Cell 29 (22): 2674-2686. 1 November 2018

Arrhythmogenic remodeling of the left ventricle in a porcine model of repaired tetralogy of fallot.
Dubes, V. and Benoist, D. and Roubertie, F. and Gilbert, S.H. and Constantin, M. and Charron, S. and Elbes, D. and Vieillot, D. and Quesson, B. and Cochet, H. and Haïssaguerre, M. and Rooryck, C. and Bordachar, P. and Thambo, J.B. and Bernus, O.
Circulation Arrhythmia and Electrophysiology 11 (10): e006059. October 2018

Multiscale modeling and numerical simulation of calcium cycling in cardiac myocytes.
Chamakuri, N. and Neubert, W. and Gilbert, S. and Vierheller, J. and Warnecke, G. and Falcke, M.
Multiscale Modeling & Simulation 16 (3): 1115-1145. 12 July 2018

Planar cell polarity signalling coordinates heart tube remodelling through tissue-scale polarisation of actomyosin activity.
Merks, A.M. and Swinarski, M. and Meyer, A.M. and Müller, N.V. and Özcan, I. and Donat, S. and Burger, A. and Gilbert, S. and Mosimann, C. and Abdelilah-Seyfried, S. and Panáková, D.
Nature Communications 9 (1): 2161. 4 June 2018

The stretch to stray on time: resonant length of random walks in a transient.
Falcke, M. and Friedhoff, V.N.
Chaos 28 (5): 053117. 23 May 2018

Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.
Giese, W. and Milicic, G. and Schröder, A. and Klipp, E.
PLoS Computational Biology 14 (4): e1006075. 9 April 2018

On the phase space structure of IP(3) induced Ca(2+) signalling and concepts for predictive modeling.
Falcke, M. and Moein, M. and Tilūnaitė, A. and Thul, R. and Skupin, A.
Chaos 28 (4): 045115. 1 April 2018

The stretch to stray on time: resonant length of random walks in a transient.
Falcke, M. and Friedhoff, V.N.
arXiv : 1801.05446v1. 16 January 2018

2017

Life is change – dynamic modeling quantifies it.
Falcke, M.
Current Opinion in Systems Biology 3 : iv-viii. June 2017

Mapping interpuff interval distribution to the properties of inositol trisphosphate receptors.
Cao, P. and Falcke, M. and Sneyd, J.
Biophysical Journal 112 (10): 2138-2146. 23 May 2017

Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells.
Mönke, G. and Cristiano, E. and Finzel, A. and Friedrich, D. and Herzel, H. and Falcke, M. and Loewer, A.
Scientific Reports 7 : 46571. 18 April 2017

Proarrhythmic remodelling of the right ventricle in a porcine model of repaired tetralogy of Fallot.
Benoist, D. and Dubes, V. and Roubertie, F. and Gilbert, S.H. and Charron, S. and Constantin, M. and Elbes, D. and Vieillot, D. and Quesson, B. and Cochet, H. and Haissaguerre, M. and Rooryck, C. and Bordachar, P. and Thambo, J.B. and Bernus, O.
Heart 103 (5): 347-354. March 2017

2016

Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells.
Moenke, G. and Cristiano, E. and Finzel, A. and Friedrich, D. and Herzel, H. and Falcke, M. and Loewer, A.
bioRxiv : 068668. 28 November 2016

Concentration profiles of actin-binding molecules in lamellipodia.
Falcke, M.
Physica D: Nonlinear Phenomena 318-319 : 50-57. 1 April 2016

Models of calcium signalling.
Dupont, G. and Falcke, M. and Kirk, V. and Sneyd, J.
Interdisciplinary Applied Mathematics, 43 . Springer (Switzerland). ISBN 978-3-319-29645-6 2016

2015

A multiscale computational model of spatially resolved calcium cycling in cardiac myocytes: from detailed cleft dynamics to the whole cell concentration profiles.
Vierheller, J. and Neubert, W. and Falcke, M. and Gilbert, S.H. and Chamakuri, N.
Frontiers in Physiology 6 : 255. 24 September 2015

Identification of region-specific myocardial gene expression patterns in a chronic swine model of repaired tetralogy of fallot.
Charron, S. and Roubertie, F. and Benoist, D. and Dubes, V. and Gilbert, S.H. and Constantin, M. and Vieillot, D. and Elbes, D. and Quesson, B. and Bordachar, P. and Haissaguerre, M. and Bernus, O. and Thambo, J.B. and Rooryck, C.
PLoS ONE 10 (8): e0134146. 7 August 2015

Mechanical properties of branched actin filaments.
Razbin, M. and Falcke, M. and Benetatos, P. and Zippelius, A.
arXiv : 1506.08051v1. 26 June 2015

Mechanical properties of branched actin filaments.
Razbin, M. and Falcke, M. and Benetatos, P. and Zippelius, A.
Physical Biology 12 (4): 046007. 4 June 2015

Comparison of diffusion tensor imaging by cardiovascular magnetic resonance and gadolinium enhanced 3D image intensity approaches to investigation of structural anisotropy in explanted rat hearts.
Bernus, O. and Radjenovic, A. and Trew, M.L. and LeGrice, I.J. and Sands, G.B. and Magee, D.R. and Smaill, B.H. and Gilbert, S.H.
Journal of Cardiovascular Magnetic Resonance 17 (1): 31. 29 April 2015

Quantification of the transmural dynamics of atrial fibrillation by simultaneous endocardial and epicardial optical mapping in an acute sheep model.
Gutbrod, S.R. and Walton, R. and Gilbert, S. and Meillet, V. and Jais, P. and Hocini, M. and Haissaguerre, M. and Dubois, R. and Bernus, O. and Efimov, I.
Circulation Arrhythmia and Electrophysiology 8 (2): 456-465. April 2015

Histopathology in 3D: from three-dimensional reconstruction to multi-stain and multi-modal analysis.
Magee, D. and Song, Y. and Gilbert, S. and Roberts, N. and Wijayathunga, N. and Wilcox, R. and Bulpitt, A. and Treanor, D.
Journal of Pathology Informatics 6 : 6. 24 February 2015

2014

Reliable encoding of stimulus intensities within random sequences of intracellular Ca2+ spikes.
Thurley, K. and Tovey, S.C. and Moenke, G. and Prince, V.L. and Meena, A. and Thomas, A.P. and Skupin, A. and Taylor, C.W. and Falcke, M.
Science Signaling 7 (331): ra59. 24 June 2014

Polymerization, bending, tension: What happens at the leading edge of motile cells?
Falcke, M. and Zimmermann, J.
European Physical Journal - Special Topics 223 (7): 1353-1372. June 2014

Structural insights into membrane interaction and caveolar targeting of dynamin-like EHD2.
Shah, C. and Hegde, B.G. and Morén, B. and Behrmann, E. and Mielke, T. and Moenke, G. and Spahn, C.M. and Lundmark, R. and Daumke, O. and Langen, R.
Structure 22 (3): 409-420. 4 March 2014

Formation of transient lamellipodia.
Zimmermann, J. and Falcke, M.
PLoS ONE 9 (2): e87638. 5 February 2014

2013

A stochastic model of calcium puffs based on single-channel data.
Cao, P. and Donovan, G. and Falcke, M. and Sneyd, J.
Biophysical Journal 105 (5): 1133-1142. 3 September 2013

On the existence and strength of stable membrane protrusions.
Zimmermann, J. and Falcke, M.
New Journal of Physics 15 : 015021. January 2013

2012

Hierarchic stochastic modelling applied to intracellular Ca(2+) signals.
Moenke, G. and Falcke, M. and Thurley, K.
PLoS ONE 7 (12): e51178. 27 December 2012

Membrane waves driven by forces from actin filaments.
Gholami, A. and Enculescu, M. and Falcke, M.
New Journal of Physics 14 : 115002. 2 November 2012

Fundamental properties of Ca(2+) signals.
Thurley, K. and Skupin, A. and Thul, R. and Falcke, M.
Biochimica et Biophysica Acta - General Subjects 1820 (8): 1185-1194. August 2012

Adaptive space and time numerical simulation of reaction-diffusion models for intracellular calcium dynamics.
Nagaiah, C. and Ruediger, S. and Warnecke, G. and Falcke, M.
Applied Mathematics and Computation 218 (20): 10194-10210. 15 June 2012

Actin filament elasticity and retrograde flow shape the force-velocity relation of motile cells.
Zimmermann, J. and Brunner, C. and Enculescu, M. and Goegler, M. and Ehrlicher, A. and Kaes, J. and Falcke, M.
Biophysical Journal 102 (2): 287-295. 18 January 2012

How does the ryanodine receptor in the ventricular myocyte wake up: by a single or by multiple open L-type Ca(2+) channels?
Schendel, T. and Thul, R. and Sneyd, J. and Falcke, M.
European Biophysics Journal 41 (1): 27-39. January 2012

Calcium signaling: from single channels to pathways.
Skupin, A. and Thurley, K.
Advances in Experimental Medicine and Biology 740 : 531-551. 2012

Modeling morphodynamic phenotypes and dynamic regimes of cell motion.
Enculescu, M. and Falcke, M.
Advances in Experimental Medicine and Biology 736 (3): 337-358. 2012

2011

Timescales of IP(3)-evoked Ca(2+) spikes emerge from Ca(2+) puffs only at the cellular level.
Thurley, K. and Smith, I.F. and Tovey, S.C. and Taylor, C.W. and Parker, I. and Falcke, M.
Biophysical Journal 101 (11): 2638-2644. 7 December 2011

Actin-based propulsion of spatially extended objects.
Enculescu, M. and Falcke, M.
New Journal of Physics 13 : 053040. May 2011

Metabolic synchronization by traveling waves in yeast cell layers.
Schuetze, J. and Mair, T. and Hauser, M.J. and Falcke, M. and Wolf, J.
Biophysical Journal 100 (4): 809-813. 16 February 2011

Derivation of Ca2+ signals from puff properties reveals that pathway function is robust against cell variability but sensitive for control.
Thurley, K. and Falcke, M.
Proceedings of the National Academy of Sciences of the United States of America 108 (1): 427-432. 4 January 2011

2010

Filament capping and nucleation in actin-based motility.
Faber, M. and Enculescu, M. and Falcke, M.
European Physical Journal - Special Topics 191 (1): 147-158. December 2010

Leading-edge-gel coupling in lamellipodium motion.
Zimmermann, J. and Enculescu, M. and Falcke, M.
Physical Review E 82 (5): 051925. 18 November 2010

Statistical analysis of calcium oscillations.
Skupin, A. and Falcke, M.
European Physical Journal - Special Topics 187 (1): 231-240. September 2010

Calcium signals driven by single channel noise.
Skupin, A. and Kettenmann, H. and Falcke, M.
PLoS Computational Biology 6 (8): e1000870. 5 August 2010

Modeling of protrusion phenotypes driven by the actin-membrane interaction.
Enculescu, M. and Sabouri-Ghomi, M. and Danuser, G. and Falcke, M.
Biophysical Journal 98 (8): 1571-1581. 21 April 2010

Efficient and detailed model of the local Ca(2+) release unit in the ventricular cardiac myocyte.
Schendel, T. and Falcke, M.
Genome Informatics 22 (1): 142-155. January 2010

2009

From puffs to global Ca2+ signals: how molecular properties shape global signals.
Skupin, A. and Falcke, M.
Chaos 19 (3): 037111. 18 September 2009

Toward a predictive model of Ca2+ puffs.
Thul, R. and Thurley, K. and Falcke, M.
Chaos 19 (3): 037108. 18 September 2009

Introduction to focus issue: intracellular Ca2+ dynamics--a change of modeling paradigm?
Falcke, M.
Chaos 19 (3): 037101. September 2009

Modeling of the modulation by buffers of Ca2+ release through clusters of IP3 receptors.
Zeller, S. and Ruediger, S. and Engel, H. and Sneyd, J. and Warnecke, G. and Parker, I. and Falcke, M.
Biophysical Journal 97 (4): 992-1002. 19 August 2009

Waiting time distributions for clusters of IP3 receptors.
Higgins, E.R. and Schmidle, H. and Falcke, M.
Journal of Theoretical Biology 259 (2): 338-349. 21 July 2009

A kinetic model of the inositol trisphosphate receptor based on single-channel data.
Gin, E. and Falcke, M. and Wagner, L.E. and Yule, D.I. and Sneyd, J.
Biophysical Journal 96 (10): 4053-4062. 20 May 2009

Markov chain Monte Carlo fitting of single-channel data from inositol trisphosphate receptors.
Gin, E. and Falcke, M. and Wagner, L.E. and Yule, D.I. and Sneyd, J.
Journal of Theoretical Biology 257 (3): 460-474. 7 April 2009

Clustering of InsP3 receptors by InsP3 retunes their regulation by InsP3 and Ca2+.
Taufiq-Ur-Rahman, and Skupin, A. and Falcke, M. and Taylor, C.W.
Nature 458 (7238): 655-659. 2 April 2009

2008

Announcement: Focus issue on "Intracellular Ca(2+) Dynamics- A Change of Modeling Paradigm?".
Falcke, M.
Chaos 18 (4): 040201. December 2008

Adaptive numerical simulation of intracellular calcium dynamics using domain decomposition methods.
Nagaiah, C. and Ruediger, S. and Warnecke, G. and Falcke, M.
Applied Numerical Mathematics 58 (11): 1658-1674. November 2008

Stochastic hierarchical systems: excitable dynamics.
Leonhardt, H. and Zaks, M.A. and Falcke, M. and Schimansky-Geier, L.
Journal of Biological Physics 34 (5): 521-538. October 2008

Dynamic regimes and bifurcations in a model of actin-based motility.
Enculescu, M. and Gholami, A. and Falcke, M.
Physical Review E 78 (3 Pt 1): 031915. September 2008

The role of IP(3)R clustering in Ca(2+) signalinG.
Skupin, A. and Falcke, M.
Genome Informatics 20 : 15-24. June 2008

How does intracellular Ca2+ oscillate: by chance or by the clock?
Skupin, A. and Kettenmann, H. and Winkler, U. and Wartenberg, M. and Sauer, H. and Tovey, S.C. and Taylor, C.W. and Falcke, M.
Biophysical Journal 94 (6): 2404-2411. 15 March 2008

Velocity oscillations in actin-based motility.
Gholami, A. and Falcke, M. and Frey, E.
New Journal of Physics 10 : 033022. 12 March 2008

Temperature and nitric oxide control spontaneous calcium transients in astrocytes.
Schipke, C.G. and Heidemann, A. and Skupin, A. and Peters, O. and Falcke, M. and Kettenmann, H.
Cell Calcium 43 (3): 285-295. March 2008

2007

Quasi-steady approximation for ion channel currents.
Bentele, K. and Falcke, M.
Biophysical Journal 93 (8): 2597-2608. 15 October 2007

Reaction rate of small diffusing molecules on a cylindrical membrane.
Straube, R. and Ward, M.J. and Falcke, M.
Journal of Statistical Physics 129 (2): 377-405. October 2007

Hybrid stochastic and deterministic simulations of calcium blips.
Ruediger, S. and Shuai, J.W. and Huisinga, W. and Nagaiah, C. and Warnecke, G. and Parker, I. and Falcke, M.
Biophysical Journal 93 (6): 1847-1857. 15 September 2007

Waiting time distributions for clusters of complex molecules.
Thul, R. and Falcke, M.
Europhysics Letters 79 (3): 38003. August 2007

Non-Markovian approach to globally coupled excitable systems.
Prager, T. and Falcke, M. and Schimansky-Geier, L. and Zaks, M.A.
Physical Review E 76 (1 Pt 1): 011118. 24 July 2007

Reversible clustering under the influence of a periodically modulated binding rate.
Straube, R. and Falcke, M.
Physical Review E 76 (1 Pt 1): 010402. July 2007

Wave trains in an excitable FitzHugh-Nagumo model: bistable dispersion relation and formation of isolas.
Roeder, G. and Bordyugov, G. and Engel, H. and Falcke, M.
Physical Review E 75 (3 Pt 2): 036202. March 2007

2006

Frequency of elemental events of intracellular Ca(2+) dynamics.
Thul, R. and Falcke, M.
Physical Review E 73 (6 Pt 1): 061923. June 2006

2005

Models of the inositol trisphosphate receptor.
Sneyd, J. and Falcke, M.
Progress in Biophysics and Molecular Biology 89 (3): 207-245. November 2005

Reactive clusters on a membrane.
Thul, R. and Falcke, M.
Physical Biology 2 (1): 51-59. March 2005

2004

Stability of membrane bound reactions.
Thul, R. and Falcke, M.
Physical Review Letters 93 (18): 188103. 29 October 2004

A comparison of three models of the inositol trisphosphate receptor.
Sneyd, J. and Falcke, M. and Dufour, J.F. and Fox, C.
Progress in Biophysics and Molecular Biology 85 (2-3): 121-140. June 2004

Reading the patterns in living cells - the physics of Ca2+ signaling.
Falcke, M.
Advances in Physics 53 (3): 255-440. May 2004

Release currents of IP(3) receptor channel clusters and concentration profiles.
Thul, R. and Falcke, M.
Biophysical Journal 86 (5): 2660-2673. May 2004

2003

Modeling the dependence of the period of intracellular Ca2+ waves on SERCA expression.
Falcke, M. and Li, Y. and Lechleiter, J.D. and Camacho, P.
Biophysical Journal 85 (3): 1474-1481. September 2003

Deterministic and stochastic models of intracellular Ca2+ waves.
Falcke, M.
New Journal of Physics 5 : 96. July 2003

Buffers and oscillations in intracellular Ca2+ dynamics.
Falcke, M.
Biophysical Journal 84 (1): 28-41. January 2003

On the role of stochastic channel behavior in intracellular Ca2+ dynamics.
Falcke, M.
Biophysical Journal 84 (1): 42-56. January 2003

2000

Stochastic spreading of intracellular Ca(2+) release.
Falcke, M. and Tsimring, L. and Levine, H.
Physical Review E 62 (2 Pt B): 2636-2643. August 2000

Discrete stochastic modeling of calcium channel dynamics.
Baer, M. and Falcke, M. and Levine, H. and Tsimring, L.S.
Physical Review Letters 84 (24): 5664-5667. 12 June 2000

Modeling observed chaotic oscillations in bursting neurons: the role of calcium dynamics and IP3.
Falcke, M. and Huerta, R. and Rabinovich, M.I. and Abarbanel, H.D. and Elson, R.C. and Selverston, A.I.
Biological Cybernetics 82 (6): 517-527. June 2000

Dispersion gap and localized spiral waves in a model for intracellular Ca2+ dynamics.
Falcke, M. and Or-Guil, M. and Baer, M.
Physical Review Letters 84 (20): 4753-4756. 15 May 2000

1999

Impact of mitochondrial Ca2+ cycling on pattern formation and stability.
Falcke, M. and Hudson, J.L. and Camacho, P. and Lechleiter, J.D.
Biophysical Journal 77 (1): 37-44. July 1999

Spiral breakup and defect dynamics in a model for intracellular Ca2+ dynamics.
Falcke, M. and Baer, M. and Lechleiter, J.D. and Hudson, J.L.
Physica D 129 (3-4): 236-252. 15 May 1999

1998

Pattern selection by gene expression in Dictyostelium discoideum.
Falcke, M. and Levine, H.
Physical Review Letters 80 (17): 3875-3878. April 1998

1997

Quantification of transients using empirical orthogonal functions.
Arndt, J. and Herzel, H. and Bose, S. and Falcke, M. and Scholl, E.
Chaos Solitons & Fractals 8 (12): 1911-1920. December 1997

Traveling pulses in anisotropic oscillatory media with global coupling.
Falcke, M. and Engel, H.
Physical Review E 56 (1): 635-641. 1997

1995

Cluster formation, standing waves, and stripe patterns in oscillatory active media with local and global coupling.
Falcke, M. and Engel, H. and Neufeld, M.
Physical Review E 52 (1): 763-771. July 1995

1994

Pattern-formation during the CO oxidation on Pt(110) surfaces under global coupling.
Falcke, M. and Engel, H.
Journal of Chemical Physics 101 (7): 6255-6263. October 1994

Chemical turbulence and standing waves in a surface reaction model: The influence of global coupling and wave instabilities.
Baer, M. and Hildebrand, M. and Eiswirth, M. and Falcke, M. and Engel, H. and Neufeld, M.
Chaos 4 (3): 499-508. September 1994

Influence of global coupling through the gas phase on the dynamics of CO oxidation on Pt(110).
Falcke, M. and Engel, H.
Physical Review E 50 (2): 1353-1359. August 1994

1992

Traveling waves in the CO oxidation on Pt(110) - Theory.
Falcke, M. and Baer, M. and Engel, H. and Eiswirth, M.
Journal of Chemical Physics 97 (6): 4555-4563. 15 September 1992

Dispersion-relation and spiral rotation in an excitable surface-reaction.
Baer, M. and Falcke, M. and Eiswirth, M.
Physica A 188 (1-3): 78-88. 1 September 1992

Reaction fronts and pulses in the CO oxidation on Pt: therortical analysis.
Baer, M. and Falcke, M. and Zuelicke, C. and Engel, H. and Eiswirth, M. and Ertl, G.
Surface Science 269-270 (Pt A): 471-475. 15 May 1992

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