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Immunofluorescence imaging-guided laser microdissection for ultralow input spatial tissue proteomics.
Fritzsche, Sonja ORCID: https://orcid.org/0000-0003-3335-3534 and Coscia, Fabian ORCID: https://orcid.org/0000-0002-2244-5081
Methods in Molecular Biology 3015 : 83-94. 2026

Quality assurance in metabolomics and metabolic profiling.
Kirwan, J.A. ORCID: https://orcid.org/0000-0002-5423-1651, Bruning, U. ORCID: https://orcid.org/0000-0003-0112-4032 and Mosley, J.D.
Methods in Molecular Biology 2891 : 15-51. 16 January 2025

LINNAEUS: simultaneous single-cell lineage tracing and cell type identification.
Spanjaard, B. ORCID: https://orcid.org/0000-0003-1309-8839 and Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290
Methods in Molecular Biology 2886 : 243-263. 3 January 2025

Concurrent profiling of localized transcriptome and RNA dynamics in neurons by spatial SLAMseq.
Dantsuji, S. and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Methods in Molecular Biology 2863 : 297-317. 2025

Identifying chromosome movement patterns during meiosis using ChroMo.
Pinto-Cruz, J. ORCID: https://orcid.org/0000-0002-2497-6783, Correas, M., Mendoza-Madrigal, R., León-Periñán, D. ORCID: https://orcid.org/0000-0002-7970-0362 and Fernández-Álvarez, A. ORCID: https://orcid.org/0000-0002-7455-1425
Methods in Molecular Biology 2818 : 271-288. 11 August 2024

3D spheroid and organoid models to study neuroinfection of RNA viruses.
Dos Reis, V.P., Cirksena, K., Rybak-Wolf, A. ORCID: https://orcid.org/0000-0002-1192-5290, Seeger, B., Herker, E. and Gerold, G.
Methods in Molecular Biology 2824 : 409-424. August 2024

Single-cell RNA-sequencing of RVFV infection.
Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806
Methods in Molecular Biology 2824 : 361-372. August 2024

Measurement of forces acting on single T-cell receptors.
Schrangl, L., Göhring, J. ORCID: https://orcid.org/0000-0002-6755-5305, Kellner, F. ORCID: https://orcid.org/0000-0001-5931-3798, Huppa, J.B. ORCID: https://orcid.org/0000-0003-2634-8198 and Schütz, G.J. ORCID: https://orcid.org/0000-0003-1542-1089
Methods in Molecular Biology 2800 : 147-165. 7 May 2024

A DNA origami-based biointerface to interrogate the spatial requirements for sensitized T-Cell antigen recognition.
Hellmeier, J., Platzer, R., Huppa, J.B. and Sevcsik, E.
Methods in Molecular Biology 2654 : 277-302. 28 April 2023

Combining metabolic pulse labeling and quantitative proteomics to monitor protein synthesis upon viral infection.
Bogdanow, B., Katsimani, N., Liu, F. and Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751
Methods in Molecular Biology 2610 : 149-165. 2023

Physics-based polymer models to probe chromosome structure in single molecules.
Conte, M. ORCID: https://orcid.org/0000-0002-6670-9800, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Abraham, A. and Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416
Methods in Molecular Biology 2655 : 57-66. 2023

Thioester and oxyester linkages in the ubiquitin system.
Ferri-Blazquez, A. ORCID: https://orcid.org/0000-0002-4533-5117, Jarosch, E. ORCID: https://orcid.org/0000-0002-5897-3492 and Sommer, T. ORCID: https://orcid.org/0000-0001-9990-5202
Methods in Molecular Biology 2602 : 3-18. 2023

Resolving crosstalk between signaling pathways using mathematical modeling and time-resolved single cell data.
Konrath, F. ORCID: https://orcid.org/0000-0002-6843-6252, Loewer, A. ORCID: https://orcid.org/0000-0002-8819-3040 and Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868
Methods in Molecular Biology 2634 : 267-284. 2023

Visualizing MyoD oscillations in muscle stem cells.
Lahmann, I. ORCID: https://orcid.org/0000-0003-0640-4519 and Birchmeier, C. ORCID: https://orcid.org/0000-0002-2041-8872
Methods in Molecular Biology 2640 : 259-276. 2023

Concomitant sequencing of accessible chromatin and mitochondrial genomes in single cells using mtscATAC-seq.
Ludwig, L.S. ORCID: https://orcid.org/0000-0002-2916-2164 and Lareau, C.A. ORCID: https://orcid.org/0000-0003-4179-4807
Methods in Molecular Biology 2611 : 269-282. 2023

Gene editing in mouse zygotes using the CRISPR/Cas9 system.
Wefers, B., Wurst, W. and Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803
Methods in Molecular Biology 2631 : 207-230. 2023

Analysis of single-cell transcriptome data in drosophila.
Yousefian, S. ORCID: https://orcid.org/0000-0003-0902-0369, Musillo, M.J. and Bageritz, J. ORCID: https://orcid.org/0000-0002-9531-0452
Methods in Molecular Biology 2540 (3): 93-111. 19 August 2022

Claudin-targeted suicide gene therapy for claudin-overexpressing tumor cells by using modified clostridium perfringens enterotoxin (CPE).
Beier, L.S., Piontek, J., Piontek, A., Protze, J., Kobelt, D. ORCID: https://orcid.org/0000-0002-9373-0648 and Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231
Methods in Molecular Biology 2521 (3): 173-188. 23 June 2022

Generation of redirected engineered human chimeric antigen receptor (CAR) T cells.
Bunse, M. ORCID: https://orcid.org/0000-0002-7554-2520 and Höpken, U.E. ORCID: https://orcid.org/0000-0002-0776-4893
Methods in Molecular Biology 2521 (3): 67-83. 23 June 2022

TCR and CAR engineering of primary human T cells.
Edes, I., Clauss, J. ORCID: https://orcid.org/0000-0001-6783-1536, Stahn, R., Sada Japp, A. ORCID: https://orcid.org/0000-0001-8106-8987 and Lorenz, F.K.M. ORCID: https://orcid.org/0000-0001-7826-0839
Methods in Molecular Biology 2521 (3): 85-93. 23 June 2022

A brief introduction to current cancer gene therapy.
Kobelt, D. ORCID: https://orcid.org/0000-0002-9373-0648, Pahle, J. and Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231
Methods in Molecular Biology 2521 (3): 1-21. 23 June 2022

Gene gun Her2/neu DNA vaccination: evaluation of vaccine efficacy in a syngeneic Her2/neu mouse tumor model.
Nguyen-Hoai, T., Hohn, O., Pezzutto, A. ORCID: https://orcid.org/0000-0002-3246-4470 and Westermann, J.
Methods in Molecular Biology 2521 (3): 129-154. 23 June 2022

TCR gene therapy for cancer.
Rhein, S. ORCID: https://orcid.org/0000-0002-9445-2352 and Çakmak-Görür, N. ORCID: https://orcid.org/0000-0001-7857-2461
Methods in Molecular Biology 2521 (3): 95-128. 23 June 2022

Capillary gel electrophoresis (CGE) for quality control of plasmid DNA in gene therapy: quality control of 20 years stored GMP-grade plasmid DNA.
Schmeer, M., Schleef, M., Shankar, R., Kobelt, D. ORCID: https://orcid.org/0000-0002-9373-0648 and Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231
Methods in Molecular Biology 2521 (3): 317-328. 23 June 2022

Examination of the contributions of maternal/placental-derived galectin-1 to pregnancy outcome.
Borowski, S. ORCID: https://orcid.org/0000-0002-9972-8389, Freitag, N. ORCID: https://orcid.org/0000-0001-5972-1863, Urban, I., Michel, G., Barrientos, G. and Blois, S.M. ORCID: https://orcid.org/0000-0002-0434-2660
Methods in Molecular Biology 2442 : 603-619. 2022

A polymer physics model to dissect genome organization in healthy and pathological phenotypes.
Conte, M. ORCID: https://orcid.org/0000-0002-6670-9800, Fiorillo, L., Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Musella, F., Flora, F., Abraham, A. and Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416
Methods in Molecular Biology 2301 : 307-316. 2022

Real-time measurements of intracellular cAMP gradients using FRET-based cAMP nanorulers.
Kayser, C. ORCID: https://orcid.org/0000-0001-6877-2507, Lohse, M.J. ORCID: https://orcid.org/0000-0002-0599-3510 and Bock, A. ORCID: https://orcid.org/0000-0002-6344-6494
Methods in Molecular Biology 2483 : 1-13. 2022

Disruptors of AKAP-dependent protein-protein interactions.
Walker-Gray, R., Pallien, T., Miller, D.C. ORCID: https://orcid.org/0000-0001-9852-677X, Oder, A., Neuenschwander, M. ORCID: https://orcid.org/0000-0002-3114-7975, von Kries, J.P. ORCID: https://orcid.org/0000-0003-4716-4988, Diecke, S. ORCID: https://orcid.org/0000-0002-5219-5992 and Klussmann, E. ORCID: https://orcid.org/0000-0003-4004-5003
Methods in Molecular Biology 2483 : 117-139. 2022

From tube to structure: SPA Cryo-EM workflow using apoferritin as an example.
Diebolder, C.A. ORCID: https://orcid.org/0000-0001-7694-7362, Dillard, R.S. and Renault, L.
Methods in Molecular Biology 2305 (2305): 229-256. 6 May 2021

From operating table to laboratory bench: the path toward metastasis research from the clinical setting.
Alberto Vilchez, M. ORCID: https://orcid.org/0000-0002-6249-6932 and Rau, B.
Methods in Molecular Biology 2294 : 325-333. 2021

Quantitative assessment of renal perfusion and oxygenation by invasive probes: basic concepts.
Cantow, K. ORCID: https://orcid.org/0000-0002-3907-6315, Evans, R.G., Grosenick, D., Gladytz, T. ORCID: https://orcid.org/0000-0003-1072-0098, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527, Flemming, B. and Seeliger, E. ORCID: https://orcid.org/0000-0002-5685-8044
Methods in Molecular Biology 2216 : 89-107. 2021

Monitoring renal hemodynamics and oxygenation by invasive probes: experimental protocol.
Cantow, K. ORCID: https://orcid.org/0000-0002-3907-6315, Ladwig-Wiegard, M., Flemming, B., Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Seeliger, E. ORCID: https://orcid.org/0000-0002-5685-8044
Methods in Molecular Biology 2216 : 327-347. 2021

Quantitative analysis of renal perfusion by arterial spin labeling.
Chuang, K.H., Kober, F. and Ku, M.C. ORCID: https://orcid.org/0000-0003-0963-2461
Methods in Molecular Biology 2216 : 655-666. 2021

Renal blood flow using arterial spin labeling (ASL) MRI: experimental protocol and principles.
Chuang, K.H., Meier, M., Fernández-Seara, M.A., Kober, F. and Ku, M.C. ORCID: https://orcid.org/0000-0003-0963-2461
Methods in Molecular Biology 2216 : 443-453. 2021

A bioinformatic pipeline to identify biomarkers for metastasis formation from RNA sequencing data.
Dahlmann, M. ORCID: https://orcid.org/0000-0002-0036-5283 and Stein, U.S. ORCID: https://orcid.org/0000-0001-7006-282X
Methods in Molecular Biology 2294 : 221-238. 2021

Hardware considerations for preclinical magnetic resonance of the kidney.
Delgado, P.R. ORCID: https://orcid.org/0000-0003-2009-3024, Küstermann, E., Kühne, A. ORCID: https://orcid.org/0000-0002-4133-5056, Millward, J.M. ORCID: https://orcid.org/0000-0003-4484-2798, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527, Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568 and Meier, M.
Methods in Molecular Biology 2216 : 131-155. 2021

Genome-wide analysis of actively translated open reading frames using riboTaper/ORFquant.
Harnett, D. ORCID: https://orcid.org/0000-0002-9190-128X, Meerdink, E., Calviello, L. ORCID: https://orcid.org/0000-0002-5600-0988, Sydow, D. and Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116
Methods in Molecular Biology 2252 : 331-346. 2021

Bioenergetic profiling of human pluripotent stem cells.
Inak, G., Henke, M.T. ORCID: https://orcid.org/0000-0001-6572-1667 and Prigione, A. ORCID: https://orcid.org/0000-0001-9457-1952
Methods in Molecular Biology 2277 : 391-403. 2021

Analysis of renal diffusion-weighted imaging (DWI) using apparent diffusion coefficient (ADC) and intravoxel incoherent motion (IVIM) models.
Jerome, N.P. and Periquito, J.S. ORCID: https://orcid.org/0000-0003-3702-9264
Methods in Molecular Biology 2216 : 611-635. 2021

Preparation and monitoring of small animals in renal MRI.
Kaucsar, T., Hosszu, A., Seeliger, E. ORCID: https://orcid.org/0000-0002-5685-8044, Reimann, H.M. ORCID: https://orcid.org/0000-0003-1053-9256 and Fekete, A.
Methods in Molecular Biology 2216 : 45-55. 2021

Real-time cell migration monitoring to analyze drug synergism in the scratch assay using the IncuCyte system.
Kobelt, D. ORCID: https://orcid.org/0000-0002-9373-0648, Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231 and Stein, U.S. ORCID: https://orcid.org/0000-0001-7006-282X
Methods in Molecular Biology 2294 : 133-142. 2021

Noninvasive renal perfusion measurement using arterial spin labeling (ASL) MRI: basic concept.
Ku, M.C. ORCID: https://orcid.org/0000-0003-0963-2461, Fernández-Seara, M.A., Kober, F. and Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527
Methods in Molecular Biology 2216 : 229-239. 2021

Fluorine ((19)F) MRI for assessing inflammatory cells in the kidney: experimental protocol.
Ku, M.C. ORCID: https://orcid.org/0000-0003-0963-2461, Schreiber, A. ORCID: https://orcid.org/0000-0003-1244-6379, Delgado, P.R. ORCID: https://orcid.org/0000-0003-2009-3024, Boehm-Sturm, P., Kettritz, R. ORCID: https://orcid.org/0000-0001-5821-6718, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527, Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568 and Waiczies, S. ORCID: https://orcid.org/0000-0002-9916-9572
Methods in Molecular Biology 2216 : 495-507. 2021

Preparation of ex vivo rodent phantoms for developing, testing, and training MR imaging of the kidney and other organs.
Millward, J.M. ORCID: https://orcid.org/0000-0003-4484-2798, Periquito, J.S. ORCID: https://orcid.org/0000-0003-3702-9264, Delgado, P.R. ORCID: https://orcid.org/0000-0003-2009-3024, Prinz, C. ORCID: https://orcid.org/0000-0003-3330-031X, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Waiczies, S. ORCID: https://orcid.org/0000-0002-9916-9572
Methods in Molecular Biology 2216 : 75-85. 2021

Renal MRI diffusion: experimental protocol.
Periquito, J.S. ORCID: https://orcid.org/0000-0003-3702-9264, Meier, M., Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527, Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568 and Jerome, N.P.
Methods in Molecular Biology 2216 : 419-428. 2021

Analysis protocols for MRI mapping of the blood oxygenation-sensitive parameters T(2)* and T(2) in the kidney.
Periquito, J.S. ORCID: https://orcid.org/0000-0003-3702-9264, Starke, L. ORCID: https://orcid.org/0000-0002-0359-0101, Santos, C.M., Freitas, A.C., Loução, N., Polo, P.G., Nunes, R.G., Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568
Methods in Molecular Biology 2216 : 591-610. 2021

Recommendations for preclinical renal MRI: a comprehensive open-access protocol collection to improve training, reproducibility, and comparability of studies.
Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568, Back, S.J., Fekete, A., Friedli, I., Hectors, S., Jerome, N.P., Ku, M.C. ORCID: https://orcid.org/0000-0003-0963-2461, Longo, D.L., Meier, M., Millward, J.M. ORCID: https://orcid.org/0000-0003-4484-2798, Periquito, J.S. ORCID: https://orcid.org/0000-0003-3702-9264, Seeliger, E. ORCID: https://orcid.org/0000-0002-5685-8044, Serai, S.D, Waiczies, S. ORCID: https://orcid.org/0000-0002-9916-9572, Sourbron, S., Laustsen, C. and Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527
Methods in Molecular Biology 2216 : 3-23. 2021

Essential practical steps for MRI of the kidney in experimental research.
Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568, Periquito, J.S. ORCID: https://orcid.org/0000-0003-3702-9264 and Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527
Methods in Molecular Biology 2216 : 349-367. 2021

Experimental protocol for MRI mapping of the blood oxygenation-sensitive parameters T(2)* and T(2) in the kidney.
Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568, Zhao, K. ORCID: https://orcid.org/0000-0003-4769-7477, Fain, S.B., Prasad, P.V. and Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527
Methods in Molecular Biology 2216 : 403-417. 2021

Subsegmentation of the kidney in experimental MR images using morphology-based regions-of-interest or multiple-layer concentric objects.
Riazy, L. ORCID: https://orcid.org/0000-0001-8294-1194, Milani, B., Periquito, J.S. ORCID: https://orcid.org/0000-0003-3702-9264, Cantow, K. ORCID: https://orcid.org/0000-0002-3907-6315, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527, Pruijm, M., Seeliger, E. ORCID: https://orcid.org/0000-0002-5685-8044 and Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568
Methods in Molecular Biology 2216 : 549-564. 2021

Bioluminescence in G protein-coupled receptors drug screening using nanoluciferase and halo-tag technology.
Schihada, H., Nemec, K. ORCID: https://orcid.org/0000-0002-3555-5853, Lohse, M.J. ORCID: https://orcid.org/0000-0002-0599-3510 and Maiellaro, I.
Methods in Molecular Biology 2268 : 137-147. 2021

Data preparation protocol for low signal-to-noise ratio fluorine-19 MRI.
Starke, L. ORCID: https://orcid.org/0000-0002-0359-0101, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Waiczies, S. ORCID: https://orcid.org/0000-0002-9916-9572
Methods in Molecular Biology 2216 : 711-722. 2021

Denoising for improved parametric MRI of the kidney: protocol for nonlocal means filtering.
Starke, L. ORCID: https://orcid.org/0000-0002-0359-0101, Tabelow, K., Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568
Methods in Molecular Biology 2216 : 565-576. 2021

Functional imaging using fluorine ((19)F) MR methods: basic concepts.
Waiczies, S. ORCID: https://orcid.org/0000-0002-9916-9572, Prinz, C. ORCID: https://orcid.org/0000-0003-3330-031X, Starke, L. ORCID: https://orcid.org/0000-0002-0359-0101, Millward, J.M. ORCID: https://orcid.org/0000-0003-4484-2798, Delgado, P.R. ORCID: https://orcid.org/0000-0003-2009-3024, Rosenberg, J., Nazaré, M. ORCID: https://orcid.org/0000-0002-1602-2330, Waiczies, H. ORCID: https://orcid.org/0000-0001-6651-4790, Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568 and Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527
Methods in Molecular Biology 2216 : 279-299. 2021

Patient-derived xenografts from solid tumors (PDX) for models of metastasis.
Wulf-Goldenberg, A., Hoffmann, J. ORCID: https://orcid.org/0000-0003-3880-1658, Becker, M., Brzezicha, B. and Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231
Methods in Molecular Biology 2294 : 43-58. 2021

Genotoxic stress-induced senescence.
Fan, D.N.Y. ORCID: https://orcid.org/0000-0001-6826-7076 and Schmitt, C.A. ORCID: https://orcid.org/0000-0002-4731-2226
Methods in Molecular Biology 1896 : 93-105. 2019

Evolution of protein domain architectures.
Forslund, S.K. ORCID: https://orcid.org/0000-0003-4285-6993, Kaduk, M. and Sonnhammer, E.L.L.
Methods in Molecular Biology 1910 : 469-504. 2019

RNA tomography for spatially resolved transcriptomics (Tomo-seq).
Holler, K. ORCID: https://orcid.org/0000-0002-5159-9223 and Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290
Methods in Molecular Biology 1920 : 129-141. 2019

Lyophilization of synthetic gene carriers.
Kasper, J.C., Hedtrich, S. ORCID: https://orcid.org/0000-0001-6770-3657 and Friess, W.
Methods in Molecular Biology 1943 (2): 211-225. 2019

Using SMOG 2 to simulate complex biomolecular assemblies.
Levi, M., Bandarkar, P., Yang, H., Wang, A., Mohanty, U., Noel, J.K. ORCID: https://orcid.org/0000-0003-3168-6036 and Whitford, P.C.
Methods in Molecular Biology 2022 : 129-151. 2019

Imaging glioma progression by intravital microscopy.
Stanchi, F. ORCID: https://orcid.org/0000-0003-3393-2472, Matsumoto, K. and Gerhardt, H. ORCID: https://orcid.org/0000-0002-3030-0384
Methods in Molecular Biology 1862 : 227-243. 2019

Scalable workflows and reproducible data analysis for genomics.
Strozzi, F., Janssen, R., Wurmus, R. ORCID: https://orcid.org/0009-0003-0140-4189, Crusoe, M.R., Githinji, G., Di Tommaso, P., Belhachemi, D., Möller, S., Smant, G., de Ligt, J. and Prins, P.
Methods in Molecular Biology 1910 : 723-745. 2019

Efficient gene editing of human induced pluripotent stem cells using CRISPR/Cas9.
Yumlu, S., Bashir, S. ORCID: https://orcid.org/0000-0002-1281-8710, Stumm, J. and Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803
Methods in Molecular Biology 1961 : 137-151. 2019

A filter retardation assay facilitates the detection and quantification of heat-stable, amyloidogenic mutant huntingtin aggregates in complex biosamples.
Ast, A. ORCID: https://orcid.org/0000-0002-2312-1257, Schindler, F. ORCID: https://orcid.org/0000-0002-3320-8284, Buntru, A., Schnoegl, S. and Wanker, E.E. ORCID: https://orcid.org/0000-0001-8072-1630
Methods in Molecular Biology 1780 : 31-40. 2018

Imaging of endothelial cell dynamic behavior in zebrafish.
Coxam, B. ORCID: https://orcid.org/0000-0003-1606-6373 and Gerhardt, H. ORCID: https://orcid.org/0000-0002-3030-0384
Methods in Molecular Biology 1846 : 181-195. 2018

Integrated proteogenomic approach for identifying degradation motifs in eukaryotic cells.
Geffen, Y., Appleboim, A., Gardner, R.G. and Ravid, T.
Methods in Molecular Biology 1844 : 121-136. 2018

Single-molecule fluorescence in situ hybridization (FISH) of circular RNA CDR1as.
Kocks, C. ORCID: https://orcid.org/0000-0003-1749-3334, Boltengagen, A. ORCID: https://orcid.org/0000-0002-8356-9766, Piwecka, M. ORCID: https://orcid.org/0000-0003-4104-6577, Rybak-Wolf, A. ORCID: https://orcid.org/0000-0002-1192-5290 and Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332
Methods in Molecular Biology 1724 : 77-96. 2018

Cardiac MRI in small animals.
Ku, M.C. ORCID: https://orcid.org/0000-0003-0963-2461, Huelnhagen, T. ORCID: https://orcid.org/0000-0002-6755-2171, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568
Methods in Molecular Biology 1718 : 269-284. 2018

Assessment of blood brain barrier leakage with gadolinium-enhanced MRI.
Ku, M.C. ORCID: https://orcid.org/0000-0003-0963-2461, Waiczies, S. ORCID: https://orcid.org/0000-0002-9916-9572, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568
Methods in Molecular Biology 1718 : 395-408. 2018

Systematic detection of poly(A)(+) RNA-interacting proteins and their differential binding.
Milek, M. ORCID: https://orcid.org/0000-0002-0803-8439 and Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734
Methods in Molecular Biology 1649 : 405-417. 2018

Metabolic labeling of newly synthesized RNA with 4sU to in parallel assess RNA transcription and decay.
Sun, W. ORCID: https://orcid.org/0000-0001-9607-1361 and Chen, W. ORCID: https://orcid.org/0000-0003-3263-1627
Methods in Molecular Biology 1720 : 25-34. 2018

Bioinformatics analysis of functional associations of PTMs.
Minguez, P. and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Methods in Molecular Biology 1558 (1558): 303-320. 2 February 2017

CRISPR/Cas9-mediated in vitro mutagenesis in GC-like B cells.
Chu, V.T. ORCID: https://orcid.org/0000-0003-1327-8696, Graf, R. ORCID: https://orcid.org/0000-0002-5400-9938 and Rajewsky, K. ORCID: https://orcid.org/0000-0002-6633-6370
Methods in Molecular Biology 1623 : 135-145. 2017

Detecting markers of therapy-induced senescence in cancer cells.
Fan, D.N.Y. ORCID: https://orcid.org/0000-0001-6826-7076 and Schmitt, C.A. ORCID: https://orcid.org/0000-0002-4731-2226
Methods in Molecular Biology 1534 : 41-52. 2017

Imaging activity-dependent signaling dynamics at the neuronal synapse using FRET-based biosensors.
Farsi, Z. ORCID: https://orcid.org/0000-0001-7274-981X and Woehler, A. ORCID: https://orcid.org/0000-0001-5157-9313
Methods in Molecular Biology 1538 : 261-275. 2017

Development of mouse model systems of germinal center lymphomas.
Kabrani, E. ORCID: https://orcid.org/0000-0003-0834-9912 and Sander, S. ORCID: https://orcid.org/0000-0003-4645-3366
Methods in Molecular Biology 1623 : 233-242. 2017

Epigenetics and control of RNAs.
Maatz, H. ORCID: https://orcid.org/0000-0002-9232-6272, van Heesch, S. ORCID: https://orcid.org/0000-0001-9593-1980, Kreuchwig, F., Faber, A. ORCID: https://orcid.org/0000-0003-0178-7653, Adami, E. ORCID: https://orcid.org/0000-0002-1813-6681, Hubner, N. ORCID: https://orcid.org/0000-0002-1218-6223 and Heinig, M. ORCID: https://orcid.org/0000-0002-5612-1720
Methods in Molecular Biology 1488 : 217-237. 2017

Evaluation of endothelial dysfunction in vivo.
Todiras, M. ORCID: https://orcid.org/0000-0002-9373-4753, Alenina, N. ORCID: https://orcid.org/0000-0002-6071-5433 and Bader, M. ORCID: https://orcid.org/0000-0003-4780-4164
Methods in Molecular Biology 1527 : 355-367. 2017

Isolation of eosinophils from the lamina propria of the murine small intestine.
Berek, C., Beller, A. and Chu, V.T. ORCID: https://orcid.org/0000-0003-1327-8696
Methods in Molecular Biology 1422 : 213-221. 2016

Modeling cardiovascular diseases with patient-specific human pluripotent stem cell-derived cardiomyocytes.
Burridge, P.W., Diecke, S. ORCID: https://orcid.org/0000-0002-5219-5992, Matsa, E., Sharma, A., Wu, H. and Wu, J.C.
Methods in Molecular Biology 1353 : 119-130. 2016

A pipeline for PAR-CLIP data analysis.
Jens, M. ORCID: https://orcid.org/0000-0002-6660-8743
Methods in Molecular Biology 1358 : 197-207. 2016

Generating sample-specific databases for mass spectrometry-based proteomic analysis by using RNA sequencing.
Luge, T. and Sauer, S. ORCID: https://orcid.org/0000-0002-4794-3693
Methods in Molecular Biology 1394 : 219-232. 2016

Genome editing in mice using TALE nucleases.
Wefers, B., Brandl, C., Ortiz, O., Wurst, W. and Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803
Methods in Molecular Biology 1338 : 229-243. 2016

Identifying RBP targets with RIP-seq.
Wessels, H.H. ORCID: https://orcid.org/0000-0001-5551-404X, Hirsekorn, A., Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116 and Mukherjee, N. ORCID: https://orcid.org/0000-0003-0017-1400
Methods in Molecular Biology 1358 : 141-152. 2016

Assessment of renal hemodynamics and oxygenation by simultaneous magnetic resonance imaging (MRI) and quantitative invasive physiological measurements.
Cantow, K. ORCID: https://orcid.org/0000-0002-3907-6315, Arakelyan, K., Seeliger, E. ORCID: https://orcid.org/0000-0002-5685-8044, Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568
Methods in Molecular Biology 1397 : 129-154. 17 December 2015

Magnetic resonance imaging (MRI) analysis of ischemia/reperfusion in experimental acute renal injury.
Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568, Arakelyan, K., Seeliger, E. ORCID: https://orcid.org/0000-0002-5685-8044 and Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527
Methods in Molecular Biology 1397 : 113-127. 17 December 2015

Screening for small molecule disruptors of AKAP-PKA interactions.
Schächterle, C., Christian, F., Fernandes, J.M.P. and Klussmann, E. ORCID: https://orcid.org/0000-0003-4004-5003
Methods in Molecular Biology 1294 : 151-166. 2 March 2015

Induced pluripotent stem cells (iPSCs) for modeling mitochondrial DNA disorders.
Prigione, A. ORCID: https://orcid.org/0000-0001-9457-1952
Methods in Molecular Biology 1265 : 349-356. 6 January 2015

An ex vivo model for studying mitochondrial trafficking in neurons.
Bros, H., Niesner, R. ORCID: https://orcid.org/0000-0001-8969-5432 and Infante-Duarte, C. ORCID: https://orcid.org/0000-0003-3005-351X
Methods in Molecular Biology 1264 : 465-472. 2015

RNA interference for antimetastatic therapy.
Dahlmann, M. ORCID: https://orcid.org/0000-0002-0036-5283 and Stein, U. ORCID: https://orcid.org/0000-0001-7006-282X
Methods in Molecular Biology 1317 : 153-165. 2015

Gene gun Her2/neu DNA vaccination: evaluation of vaccine efficacy in a syngeneic Her2/neu mouse tumor model.
Nguyen-Hoai, T., Pezzutto, A. ORCID: https://orcid.org/0000-0002-3246-4470 and Westermann, J.
Methods in Molecular Biology 1317 : 17-37. 2015

Oncoleaking: use of the pore-forming clostridium perfringens enterotoxin (CPE) for suicide gene therapy.
Pahle, J., Aumann, J., Kobelt, D. ORCID: https://orcid.org/0000-0002-9373-0648 and Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231
Methods in Molecular Biology 1317 : 69-85. 2015

Assessing the bioenergetic profile of human pluripotent stem cells.
Pfiffer, V. and Prigione, A. ORCID: https://orcid.org/0000-0001-9457-1952
Methods in Molecular Biology 1264 : 279-288. 2015

In vivo stable isotope labeling by amino acids in Drosophila melanogaster.
Sury, M.D., Chen, J.X. ORCID: https://orcid.org/0000-0002-3671-553X and Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751
Methods in Molecular Biology 1188 : 85-93. 8 July 2014

Experimental applications of TNF-reporter mice with far-red fluorescent label.
Shebzukhov, Y.V., Kuchmiy, A.A., Kruglov, A.A., Zipp, F. ORCID: https://orcid.org/0000-0002-1231-1928, Siffrin, V. ORCID: https://orcid.org/0000-0002-1532-2868 and Nedospasov, S.A.
Methods in Molecular Biology 1155 : 151-162. 10 April 2014

Second generation codon optimized minicircle (CoMiC) for nonviral reprogramming of human adult fibroblasts.
Diecke, S. ORCID: https://orcid.org/0000-0002-5219-5992, Lisowski, L., Kooreman, N.G. and Wu, J.C.
Methods in Molecular Biology 1181 : 1-13. 1 January 2014

Pancreas development ex vivo: culturing embryonic pancreas explants on permeable culture inserts, with fibronectin-coated glass microwells, or embedded in three-dimensional Matrigel(TM).
Shih, H.P. and Sander, M. ORCID: https://orcid.org/0000-0001-5308-7785
Methods in Molecular Biology 1210 : 229-37. 1 January 2014

IPG strip-based peptide fractionation for shotgun proteomics.
Eravci, M., Sommer, C. and Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751
Methods in Molecular Biology 1156 : 67-77. 2014

A method for the generation of TCR retrogenic mice.
Kieback, E. ORCID: https://orcid.org/0000-0003-3831-2846, Hilgenberg, E. and Fillatreau, S.
Methods in Molecular Biology 1193 : 117-126. 2014

Whole-mount in situ hybridization using DIG-labeled probes in planarian.
Rybak-Wolf, A. ORCID: https://orcid.org/0000-0002-1192-5290 and Solana, J. ORCID: https://orcid.org/0000-0002-6770-3929
Methods in Molecular Biology 1211 : 41-51. 2014

Target validation in mice by constitutive and conditional RNAi.
Kleinhammer, A., Wurst, W. and Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803
Methods in Molecular Biology 986 : 307-323. 23 January 2013

Lyophilization of synthetic gene carriers.
Kasper, J.C., Küchler, S. ORCID: https://orcid.org/0000-0001-6770-3657 and Friess, W.
Methods in Molecular Biology 948 : 133-47. 2013

A genetic strategy for the analysis of individual axon morphologies in cGMP signalling mutant mice.
Schmidt, H., Ter-Avetisyan, G. ORCID: https://orcid.org/0000-0003-2751-1938 and Rathjen, F.G. ORCID: https://orcid.org/0000-0001-5351-613X
Methods in Molecular Biology 1020 : 193-204. 2013

In vivo quantitative proteome profiling: planning and evaluation of SILAC experiments.
Kirchner, M. ORCID: https://orcid.org/0000-0002-7049-534X and Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751
Methods in Molecular Biology 893 : 175-199. 7 May 2012

The sleeping beauty transposon toolbox.
Ammar, I., Izsvak, Z. ORCID: https://orcid.org/0000-0002-2053-2384 and Ivics, Z. ORCID: https://orcid.org/0000-0002-7803-6658
Methods in Molecular Biology 859 : 229-240. 31 January 2012

An overview of the analysis of next generation sequencing data.
Gogol-Doering, A. ORCID: https://orcid.org/0009-0001-7697-0551 and Chen, W. ORCID: https://orcid.org/0000-0003-3263-1627
Methods in Molecular Biology 802 : 249-257. 2012

Genes involved in the metastatic cascade of medullary thyroid tumours.
Schreiber, C., Vormbrock, K. and Ziebold, U.
Methods in Molecular Biology 878 : 217-228. 2012

Live cell imaging of G protein-coupled receptors.
Teichmann, A., Schmidt, A., Wiesner, B., Oksche, A. and Schuelein, R.
Methods in Molecular Biology 897 : 139-169. 2012

Whole cell proteome regulation by microRNAs captured in a pulsed SILAC mass spectrometry approach.
Ebner, O.A. and Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751
Methods in Molecular Biology 725 : 315-331. 2011

Generating conditional knockout mice.
Friedel, R.H., Wurst, W., Wefers, B. and Kuehn, R. ORCID: https://orcid.org/0000-0003-1694-9803
Methods in Molecular Biology 693 : 205-231. 2011

High-throughput subcellular protein localization using transfected-cell arrays: subcellular protein localization using cell arrays.
Hu, Y. ORCID: https://orcid.org/0000-0002-5210-5301 and Janitz, M.
Methods in Molecular Biology 706 : 53-72. 2011

Rat models of cardiovascular diseases.
Bader, M. ORCID: https://orcid.org/0000-0003-4780-4164
Methods in Molecular Biology 597 : 403-414. 2010

Calibration of microarray gene-expression data.
Binder, H., Preibisch, S. ORCID: https://orcid.org/0000-0002-0276-494X and Berger, H.
Methods in Molecular Biology 576 : 375-407. 2010

Jet-injection of short hairpin RNA-encoding vectors into tumor cells.
Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231, Stein, U. ORCID: https://orcid.org/0000-0001-7006-282X and Lage, H.
Methods in Molecular Biology 629 : 123-139. 2010

CryoFISH: fluorescence in situ hybridization on ultrathin cryosections.
Xie, S.Q., Lavitas, L.M. and Pombo, A. ORCID: https://orcid.org/0000-0002-7493-6288
Methods in Molecular Biology 659 : 219-230. 2010

Generation of shRNA transgenic mice.
Hitz, C., Steuber-Buchberger, P., Delic, S., Wurst, W. and Kuehn, R. ORCID: https://orcid.org/0000-0003-1694-9803
Methods in Molecular Biology 530 : 101-129. 2009

Overview on mouse mutagenesis.
Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803 and Wurst, W.
Methods in Molecular Biology 530 : 1-12. 2009

Use of SNP-arrays for ChIP assays: computational aspects.
Muro, E.M., McCann, J.A., Rudnicki, M.A. and Andrade-Navarro, M.A. ORCID: https://orcid.org/0000-0001-6650-1711
Methods in Molecular Biology 567 : 145-154. 2009

Transposable elements as plasmid-based vectors for long-term gene transfer into tumors.
Ohlfest, J.R., Ivics, Z. ORCID: https://orcid.org/0000-0002-7803-6658 and Izsvak, Z. ORCID: https://orcid.org/0000-0002-2053-2384
Methods in Molecular Biology 542 (Part 2): 105-116. 2009

Nonviral jet-injection technology for intratumoral in vivo gene transfer of naked DNA.
Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231, Fichtner, I., Schlag, P.M. and Stein, U.S. ORCID: https://orcid.org/0000-0001-7006-282X
Methods in Molecular Biology 542 : 195-208. 2009

Insertional mutagenesis of the mouse germline with Sleeping Beauty transposition.
Takeda, J., Izsvak, Z. ORCID: https://orcid.org/0000-0002-2053-2384 and Ivics, Z. ORCID: https://orcid.org/0000-0002-7803-6658
Methods in Molecular Biology 435 : 109-125. 2008

Immunohistochemical detection of beta-galactosidase or green fluorescent protein on tissue sections.
Seymour, P.A. and Sander, M. ORCID: https://orcid.org/0000-0001-5308-7785
Methods in Molecular Biology 411 : 13-23. 13 September 2007

StemBase: a resource for the analysis of stem cell gene expression data.
Porter, C.J., Palidwor, G.A., Sandie, R., Krzyzanowski, P.M., Muro, E.M., Perez-Iratxeta, C. and Andrade-Navarro, M.A. ORCID: https://orcid.org/0000-0001-6650-1711
Methods in Molecular Biology 407 : 137-148. 2007

Comparative promoter analysis in vertebrate genomes with the CORG workbench.
Dieterich, C. and Vingron, M.
Methods in Molecular Biology 338 : 105-118. 2006

Derivation, maintenance, and characterization of rat embryonic stem cells in vitro.
Schulze, M., Ungefroren, H., Bader, M. ORCID: https://orcid.org/0000-0003-4780-4164 and Faendrich, F.
Methods in Molecular Biology 329 : 45-58. 2006

E2F transcription factors and pRb pocket proteins in cell cycle progression.
Hauck, L. and von Harsdorf, R.
Methods in Molecular Biology 296 : 239-245. 1 January 2005

Applications of interspersed repeat sequence polymerase chain reaction.
Zimdahl, H., Goesele, C., Kreitler, T. and Knoblauch, M.
Methods in Molecular Biology 255 : 113-129. 2004

Nanoelectrospray tandem mass spectrometry and sequence similarity searching for identification of proteins from organisms with unknown genomes.
Shevchenko, A., Sunyaev, S., Liska, A., Bork, P. and Shevchenko, A.
Methods in Molecular Biology 211 : 221-234. 1 January 2003

Huntingtin fragments form aggresome-like inclusion bodies in mammalian cells.
Boeddrich, A. ORCID: https://orcid.org/0000-0001-9118-050X, Lurz, R. and Wanker, E.E. ORCID: https://orcid.org/0000-0001-8072-1630
Methods in Molecular Biology 232 : 217-229. 2003

Differentiation of human antigen-presenting dendritic cells from CD34+ hematopoietic stem cells in vitro.
Ju, X.S. and Zenke, M.
Methods in Molecular Biology 215 : 399-407. 2003

Fourier transform infrared spectroscopy of calcium-binding proteins.
Fabian, H. and Vogel, H.J.
Methods in Molecular Biology 173 : 57-74. 2002

Conditional knockout mice.
Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803 and Schwenk, F.
Methods in Molecular Biology 209 : 159-185. 2002

Cre/loxP recombination system and gene targeting.
Kühn, R. ORCID: https://orcid.org/0000-0003-1694-9803 and Torres, R.M.
Methods in Molecular Biology 180 (5): 175-204. 2002

Book Section

Förster resonance energy transfer to study TCR-pMHC interactions in the immunological synapse.
Schütz, G.J. and Huppa, J.B. ORCID: https://orcid.org/0000-0003-2634-8198
In: The immune synapse. Methods in Molecular Biology, 1584 . Springer Nature, New York, NY, USA, 207-229. ISBN 978-1-4939-8327-8 3 March 2017

Insertional engineering of chromosomes with Sleeping Beauty transposition: an overview.
Grabundzija, I., Izsvak, Z. ORCID: https://orcid.org/0000-0002-2053-2384 and Ivics, Z. ORCID: https://orcid.org/0000-0002-7803-6658
In: Mammalian Chromosome Engineering. Methods in Molecular Biology, 738 . Springer / Humana Press, 69-85. 2011

Book

Metastasis : methods and protocols.
Stein, U.S., ed.
Methods in Molecular Biology, 2294 . Springer / Humana Press, New York, NY. ISBN 978-1-0716-1349-8 2021

Preclinical MRI of the kidney : methods and protocols.
Pohlmann, A. and Niendorf, T., eds.
Methods in Molecular Biology, 2216 . Springer / Humana Press, New York, NY. ISBN 978-1-0716-0977-4 2021

Gene knockout protocols.
Wurst, W. and Kuehn, R., eds.
Methods in Molecular Biology, 530 . Springer / Humana Press. ISBN 978-1-934115-26-8 2009

Review

Getting to the root of branched ubiquitin chains: a review of current methods and functions.
Waltho, A. ORCID: https://orcid.org/0009-0000-0059-9357 and Sommer, T. ORCID: https://orcid.org/0000-0001-9990-5202
Methods in Molecular Biology 2602 : 19-38. 2023

Evolution of protein domain architectures.
Forslund, K. ORCID: https://orcid.org/0000-0003-4285-6993 and Sonnhammer, E.L.L.
Methods in Molecular Biology 856 : 187-216. 2012

Editorial

Preface.
Niendorf, T. ORCID: https://orcid.org/0000-0001-7584-6527 and Pohlmann, A. ORCID: https://orcid.org/0000-0002-8572-2568
Methods in Molecular Biology 2216 : v-vi. 2021

Preface.
Stein, U.S. ORCID: https://orcid.org/0000-0001-7006-282X
Methods in Molecular Biology 2294 : v. 2021

The investigation of binary PPIs with the classical yeast two-hybrid (Y2H) approach, Y2H variants, and other in vivo methods for PPI mapping.
Suter, B. and Wanker, E.E. ORCID: https://orcid.org/0000-0001-8072-1630
Methods in Molecular Biology 812 : v-vi. 2012