Helmholtz Gemeinschaft

Search
Browse
Statistics
Feeds

Browse by Research Team

Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Group by: Date | Item Type | Source

Article

Inflammation in children with chronic kidney disease linked to gut dysbiosis and metabolite imbalance.
Holle, J. and Bartolomaeus, H. and Löber, U. and Behrens, F. and Bartolomaeus, T.U.P. and Anandakumar, H. and Wimmer, M. and Vu, D.L. and Kuhring, M. and Brüning, U. and Maifeld, A. and Geisberger, S. and Kempa, S. and Schumacher, F. and Kleuser, B. and Bufler, P. and Querfeld, U. and Kitschke, S. and Engler, D. and Kuhrt, L. and Drechsel, O. and Eckardt, K.U. and Forslund, S. and Thürmer, A. and McParland, V. and Kirwan, J. and Wilck, N. and Mueller, D.
Journal of the American Society of Nephrology 33 (12): 2259-2275. December 2022

Mediterranean diet and atrial fibrillation: lessons learned from the AFHRI case-control study.
Neumann, F.A. and Jagemann, B. and Makarova, N. and Börschel, C.S. and Aarabi, G. and Gutmann, F. and Schnabel, R.B. and Zyriax, B.C.
Nutrients 14 (17): 3615. 1 September 2022

Quantifying the impact of gut microbiota on inflammation and hypertensive organ damage.
Avery, E.G. and Bartolomaeus, H. and Rauch, A. and Chen, C.Y. and N'Diaye, G. and Löber, U. and Bartolomaeus, T.U.P. and Fritsche-Guenther, R. and Rodrigues, A.F. and Yarritu, A. and Zhong, C. and Fei, L. and Tsvetkov, D. and Todiras, M. and Park, J.K. and Markó, L. and Maifeld, A. and Patzak, A. and Bader, M. and Kempa, S. and Kirwan, J.A. and Forslund, S.K. and Müller, D.N. and Wilck, N.
Cardiovascular Research : cvac121. 29 July 2022 (In Press)

A comparison of solvent-based extraction methods to assess the central carbon metabolites in mouse bone and muscle.
Dias, D.B. and Fritsche-Guenther, R. and Gutmann, F. and Duda, G.N. and Kirwan, J. and Poh, P.S.P.
Metabolites 12 (5): 453. 18 May 2022

Identification and validation of small molecule analytes in mouse plasma by liquid chromatography–tandem mass spectrometry: A case study of misidentification of a short-chain fatty acid with a ketone body.
García-Rivera, Mariel A. and Fernández-Ochoa, Á. and Brüning, U. and Fritsche-Guenther, R. and Kirwan, J.A.
Talanta 242 : 123298. 15 May 2022

Analysis of adherent cell culture lysates with low metabolite concentrations using the Biocrates AbsoluteIDQ p400 HR kit.
Fritsche-Guenther, R. and Gloaguen, Y. and Eisenberger, A. and Kirwan, J.A.
Scientific Reports 12 (1): 7933. 13 May 2022

Deep learning-assisted peak curation for large-scale LC-MS metabolomics.
Gloaguen, Y. and Kirwan, J.A. and Beule, D.
Analytical Chemistry 94 (12): 4930-4937. 29 March 2022

Recent analytical approaches for the study of bioavailability and metabolism of bioactive phenolic compounds.
Fernández-Ochoa, Á. and Cádiz-Gurrea, M.L. and Fernández-Moreno, P. and Rojas-García, A. and Arráez-Román, D. and Segura-Carretero, A.
Molecules 27 (3): 777. 25 January 2022

Optimized workflow for on-line derivatization for targeted metabolomics approach by gas chromatography-mass spectrometry.
Fritsche-Guenther, R. and Gloaguen, Y. and Bauer, A. and Opialla, T. and Kempa, S. and Fleming, C.A. and Redmond, H.P. and Kirwan, J.A.
Metabolites 11 (12): 888. 18 December 2021

Radiation driven chemistry in biomolecules -- is (V)UV involved in the bioactivity of argon jet plasmas?
Bruno, G. and Wenske, S. and Mahdikia, H. and Gerling, T. and von Woedtke, T. and Wende, K.
Frontiers in Physics 9 : 759005. 14 December 2021

New insights on Phyllanthus reticulatus Poir. leaves and stem bark extracts: UPLC-ESI-TOF-MS profiles, and biopharmaceutical and in silico analysis.
Sinan, K.I. and de la Luz Cádiz-Gurrea, M. and Javier Leyva-Jiménez, F. and Fernández-Ochoa, Á. and Segura-Carretero, A. and Glamocilja, J. and Sokovic, M. and Nenadić, M. and Aktumsek, A. and Dall'Acqua, S. and Zengin, G.
New Journal of Chemistry 45 (45): 21049-21065. 7 December 2021

An integrated host-microbiome response to atrazine exposure mediates toxicity in Drosophila.
Brown, J.B. and Langley, S.A. and Snijders, A.M. and Wan, K.H. and Morris, S.N.S. and Booth, B.W. and Fisher, W.W. and Hammonds, A.S. and Park, S. and Weiszmann, R. and Yu, C. and Kirwan, J.A. and Weber, R.J.M. and Viant, M.R. and Mao, J.H. and Celniker, S.E.
Communications Biology 4 (1): 1324. 24 November 2021

Depletion of cardiac cardiolipin synthase alters systolic and diastolic function.
Smeir, E. and Leberer, S. and Blumrich, A. and Vogler, G. and Vasiliades, A. and Dresen, S. and Jaeger, C. and Gloaguen, Y. and Klose, C. and Beule, D. and Schulze, P.C. and Bodmer, R. and Foryst-Ludwig, A. and Kintscher, U.
iScience 24 (11): 103314. 19 November 2021

A prospective of multiple biopharmaceutical activities of procyanidins‐rich Uapaca togoensis pax extracts: HPLC‐ESI‐TOF‐MS coupled with bioinformatics analysis.
Ibrahime Sinan, K. and Aktumsek, A. and de la Luz Cádiz‐Gurrea, M. and Leyva‐Jiménez, F.J. and Fernández-Ochoa, Á. and Segura‐Carretero, A. and Glamocilja, J. and Sokovic, M. and Nenadić, M. and Zengin, G.
Chemistry & Biodiversity 18 (8): e2100299. 18 August 2021

Improvement in the prediction of neonatal hypoxic-ischemic encephalopathy with the integration of umbilical cord metabolites and current clinical makers.
O'Boyle, D.S. and Dunn, W.B. and O'Neill, D. and Kirwan, J.A. and Broadhurst, D.I. and Hallberg, B. and Boylan, G.B. and Murray, D.M.
Journal of Pediatrics 229 : 175-181. February 2021

Revalorization of bioactive compounds from tropical fruit by-products and industrial applications by means of sustainable approaches.
Cádiz-Gurrea, M.L. and Villegas-Aguilar, M.C. and Leyva-Jiménez, F.J. and Pimentel-Moral, S. and Fernández-Ochoa, Á. and Alañón, M.E. and Segura-Carretero, A.
Food Research International 138 (Part B): 109786. December 2020

Concepts and software package for efficient quality control in targeted metabolomics studies - MeTaQuaC.
Kuhring, M. and Eisenberger, A. and Schmidt, V. and Kränkel, N. and Leistner, D.M. and Kirwan, J. and Beule, D.
Analytical Chemistry 92 (15): 10241-10245. 4 August 2020

TaxIt: an iterative computational pipeline for untargeted strain-level identification using MS/MS spectra from pathogenic single-organism samples.
Kuhring, M. and Doellinger, J. and Nitsche, A. and Muth, T. and Renard, B.Y.
Journal of Proteome Research 19 (6): 2501-2510. 5 June 2020

Progression-dependent altered metabolism in osteosarcoma resulting in different nutrient source dependencies.
Fritsche-Guenther, R. and Gloaguen, Y. and Kirchner, M. and Mertins, P. and Tunn, P.U. and Kirwan, J.A.
Cancers 12 (6): 1371. 27 May 2020

Modified protocol of harvesting, extraction, and normalization approaches for gas chromatography mass spectrometry-based metabolomics analysis of adherent cells grown under high fetal calf serum conditions.
Fritsche-Guenther, R. and Bauer, A. and Gloaguen, Y. and Lorenz, M. and Kirwan, J.A.
Metabolites 10 (1): 2. 18 December 2019

Sex-specific metabolic and functional differences in human umbilical vein endothelial cells from twin pairs.
Lorenz, M. and Blaschke, B. and Benn, A. and Hammer, E. and Witt, E. and Kirwan, J. and Fritsche-Guenther, R. and Gloaguen, Y. and Bartsch, C. and Vietzke, A. and Kramer, F. and Kappert, K. and Brunner, P. and Nguyen, H.G. and Dreger, H. and Stangl, K. and Knaus, P. and Stangl, V.
Atherosclerosis 291 : 99-106. December 2019

WiPP: workflow for improved peak picking for gas chromatography-mass spectrometry (GC-MS) data.
Borgsmüller, N. and Gloaguen, Y. and Opialla, T. and Blanc, E. and Sicard, E. and Royer, A.L. and Le Bizec, B. and Durand, S. and Migné, C. and Pétéra, M. and Pujos-Guillot, E. and Giacomoni, F. and Guitton, Y. and Beule, D. and Kirwan, J.
Metabolites 9 (9): 171. 21 August 2019

AltamISA: a Python API for ISA-Tab files.
Kuhring, M. and Nieminen, M. and Kirwan, J. and Beule, D. and Holtgrewe, M.
Journal of Open Source Software 4 (40): 1610. 20 August 2019

SorCS2 controls functional expression of amino acid transporter EAAT3 and protects neurons from oxidative stress and epilepsy-induced pathology.
Malik, A.R. and Szydlowska, K. and Nizinska, K. and Asaro, A. and van Vliet, E.A. and Popp, O. and Dittmar, G. and Fritsche-Guenther, R. and Kirwan, J.A. and Nykjaer, A. and Lukasiuk, K. and Aronica, E. and Willnow, T.E.
Cell Reports 26 (10): 2792-2804. 5 March 2019

Untargeted metabolomic analysis and pathway discovery in perinatal asphyxia and hypoxic-ischaemic encephalopathy.
Denihan, N.M. and Kirwan, J.A. and Walsh, B.H. and Dunn, W.B. and Broadhurst, D.I. and Boylan, G.B. and Murray, D.M.
Journal of Cerebral Blood Flow and Metabolism 39 (1): 147-162. January 2019

Comparison of modified Matyash method to conventional solvent systems for polar metabolite and lipid extractions.
Sostare, J. and Di Guida, R. and Kirwan, J. and Chalal, K. and Palmer, E. and Dunn, W.B. and Viant, M.R.
Analytica Chimica Acta 1037 : 301-315. 11 December 2018

Parasitic nematodes exert antimicrobial activity and benefit from microbiota-driven support for host immune regulation.
Rausch, S. and Midha, A. and Kuhring, M. and Affinass, N. and Radonic, A. and Kühl, A.A. and Bleich, A. and Renard, B.Y. and Hartmann, S.
Frontiers in Immunology 9 : 2282. October 2018

Silent witness: dual-species transcriptomics reveals epithelial immunological quiescence to helminth larval encounter and fostered larval development.
Ebner, F. and Kuhring, M. and Radonic, A. and Midha, A. and Renard, B.Y. and Hartmann, S.
Frontiers in Immunology 9 : 1868. 15 August 2018

MetExplore: collaborative edition and exploration of metabolic networks.
Cottret, L. and Frainay, C. and Chazalviel, M. and Cabanettes, F. and Gloaguen, Y. and Camenen, E. and Merlet, B. and Heux, S. and Portais, J.C. and Poupin, N. and Vinson, F. and Jourdan, F.
Nucleic Acids Research 46 (W1): W495-W502. 2 July 2018

Mass spectrometry based metabolomics comparison of liver grafts from donors after circulatory death (DCD) and donors after brain death (DBD) used in human orthotopic liver transplantation.
Hrydziuszko, O. and Perera, M.T.P.R. and Laing, R. and Kirwan, J. and Silva, M.A. and Richards, D.A. and Murphy, N. and Mirza, D.F. and Viant, M.R.
PLoS ONE 11 (11): e0165884. 11 November 2016

Metabolomics enables precision medicine: "A White Paper, Community Perspective".
Beger, R.D. and Dunn, W. and Schmidt, M.A. and Gross, S.S. and Kirwan, J.A. and Cascante, M. and Brennan, L. and Wishart, D.S. and Oresic, M. and Hankemeier, T. and Broadhurst, D.I. and Lane, A.N. and Suhre, K. and Kastenmüller, G. and Sumner, S.J. and Thiele, I. and Fiehn, O. and Kaddurah-Daouk, R.
Metabolomics 12 (9): 149. September 2016

Predicting chronic copper and nickel reproductive toxicity to Daphnia pulex-pulicaria from whole-animal metabolic profiles.
Taylor, N.S. and Kirwan, J.A. and Johnson, C. and Yan, N.D. and Viant, M.R. and Gunn, J.M. and McGeer, J.C.
Environmental Pollution 212 : 325-329. May 2016

Metabolomics confirms that dissolved organic carbon mitigates copper toxicity.
Taylor, N.S. and Kirwan, J.A. and Yan, N.D. and Viant, M.R. and Gunn, J.M. and McGeer, J.C.
Environmental Toxicology and Chemistry 35 (3): 635-644. March 2016

Omega-3 and alpha-tocopherol provide more protection against contaminants in novel feeds for Atlantic salmon (Salmo salar L.) than omega-6 and gamma tocopherol.
Søfteland, L. and Berntssen, M.H.G. and Kirwan, J.A. and Størseth, T.R. and Viant, M.R. and Torstensen, B.E. and Waagbø, R. and Olsvik, P.A.
Toxicology Reports 3 : 211-224. 14 January 2016

Toxicological effect of single contaminants and contaminant mixtures associated with plant ingredients in novel salmon feeds.
Søfteland, L. and Kirwan, J.A. and Hori, T.S.F. and Størseth, T.R. and Sommer, U. and Berntssen, M.H.G. and Viant, M.R. and Rise, M.L. and Waagbø, R. and Torstensen, B.E. and Booman, M. and Olsvik, P.A.
Food and Chemical Toxicology 73 : 157-174. November 2014

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control.
Kirwan, J.A. and Weber, R.J.M. and Broadhurst, D.I. and Viant, M.R.
Scientific Data 1 : 140012. 10 June 2014

Metabolomics for the practising vet.
Kirwan, J.
In Practice 35 (8): 438-445. September 2013

Characterising and correcting batch variation in an automated direct infusion mass spectrometry (DIMS) metabolomics workflow.
Kirwan, J.A. and Broadhurst, D.I. and Davidson, R.L. and Viant, M.R.
Analytical and Bioanalytical Chemistry 405 (15): 5147-5157. June 2013

Fumarate is cardioprotective via activation of the Nrf2 antioxidant pathway.
Ashrafian, H. and Czibik, G. and Bellahcene, M. and Aksentijević, D. and Smith, A.C. and Mitchell, S.J. and Dodd, M.S. and Kirwan, J. and Byrne, J.J. and Ludwig, C. and Isackson, H. and Yavari, A. and Støttrup, N.B. and Contractor, H. and Cahill, T.J. and Sahgal, N. and Ball, D.R. and Birkler, R.I.D. and Hargreaves, I. and Tennant, D.A. and Land, J. and Lygate, C.A. and Johannsen, M. and Kharbanda, R.K. and Neubauer, S. and Redwood, C. and de Cabo, R. and Ahmet, I. and Talan, M. and Günther, U.L. and Robinson, A.J. and Viant, M.R. and Pollard, P.J. and Tyler, D.J. and Watkins, H.
Cell Metabolism 15 (3): 361-371. 7 March 2012

Parasites and their control in South American camelids in the United Kingdom.
Tait, S.A. and Kirwan, J.A. and Fair, C.J. and Coles, G.C. and Stafford, K.A.
Veterinary Record 150 (20): 637-638. 18 May 2002

Book Section

Comprehensive identification of plant polyphenols by LC-MS.
Fernández-Ochoa, Á. and de la Luz Cádiz-Gurrea, M. and Segura Carretero, A.
In: Mass spectrometry for food analysis. Methods and Protocols in Food Science . Humana, New York, NY, 31-42. ISBN 978-1-0716-2106-6 26 June 2022

Metabolomics: an emerging post-genomic tool for nutrition.
Whitfield, P. and Kirwan, J.
In: Genomics, proteomics, and metabolomics in nutraceuticals and functional foods. Blackwell Publishing, 271-285. ISBN 9780813814025 25 March 2010

Review

Single cell metabolism: current and future trends.
Ali, A. and Davidson, S. and Fraenkel, E. and Gilmore, I. and Hankemeier, T. and Kirwan, J.A. and Lane, A.N. and Lanekoff, I. and Larion, M. and McCall, L.I. and Murphy, M. and Sweedler, J.V. and Zhu, C.
Metabolomics 18 (10): 77. 1 October 2022

Quality assurance and quality control reporting in untargeted metabolic phenotyping: mQACC recommendations for analytical quality management.
Kirwan, J.A. and Gika, H. and Beger, R.D. and Bearden, D. and Dunn, W.B. and Goodacre, R. and Theodoridis, G. and Witting, M. and Yu, L.R. and Wilson, I.D.
Metabolomics 18 (9): 70. 27 August 2022

Cosmeceutical potential of major tropical and subtropical fruit by-products for a sustainable revalorization.
García-Villegas, A. and Rojas-García, A. and Villegas-Aguilar, M.C. and Fernández-Moreno, P. and Fernández-Ochoa, Á. and Cádiz-Gurrea, M.L. and Arráez-Román, D. and Segura-Carretero, A.
Antioxidants 11 (2): 203. 21 January 2022

Therapeutic targets for phenolic compounds from agro-industrial by-products against obesity.
de la Luz Cádiz-Gurrea, M. and Fernández-Ochoa, Á. and Del Carmen Villegas-Aguilar, M. and Arráez-Román, D. and Segura-Carretero, A.
Current Medicinal Chemistry 29 (6): 1083-1098. 2022

Lipid metabolite biomarkers in cardiovascular disease: discovery and biomechanism translation from human studies.
McGranaghan, P. and Kirwan, J.A. and Garcia-Rivera, M.A. and Pieske, B. and Edelmann, F. and Blaschke, F. and Appunni, S. and Saxena, A. and Rubens, M. and Veledar, E. and Trippel, T.D.
Metabolites 11 (9): 621. September 2021

The role of high-resolution analytical techniques in the development of functional foods.
Fernández-Ochoa, Á. and Leyva-Jiménez, F.J. and De la Luz Cádiz-Gurrea, M. and Pimentel-Moral, S. and Segura-Carretero, A.
International Journal of Molecular Sciences 22 (6): 3220. 22 March 2021

Preanalytical processing and biobanking procedures of biological samples for metabolomics research: a white paper, community perspective (for "Precision Medicine and Pharmacometabolomics Task Group"-The Metabolomics Society Initiative).
Kirwan, J.A. and Brennan, L. and Broadhurst, D. and Fiehn, O. and Cascante, M. and Dunn, W.B. and Schmidt, M.A. and Velagapudi, V.
Clinical Chemistry 64 (8): 1158-1182. August 2018

Biomarker discovery in animal health and disease: the application of post-genomic technologies.
Moore, R.E. and Kirwan, J. and Doherty, M.K. and Whitfield, P.D.
Biomarker Insights 2 : 185-196. 1 January 2007

Editorial

Biobanking for metabolomics and lipidomics in precision medicine.
Kirwan, J.A. and Kaddurah-Daouk, R. and Mitchell, T. and Pischon, T. and Schmidt, M.A. and Velagapudi, V.
Clinical Chemistry 65 (7): 827-832. 28 June 2019

Preprint

Deep learning assisted peak curation for large scale LC-MS Metabolomics.
Gloaguen, Y. and Kirwan, J. and Beule, D.
bioRxiv : 2020.08.09.242727. 10 August 2020

Concepts and software package for efficient quality control in targeted metabolomics studies - MeTaQuaC.
Kuhring, M. and Eisenberger, A. and Schmidt, V. and Kränkel, N. and Leistner, D.M. and Kirwan, J. and Beule, D.
bioRxiv : 2020.01.10.901710. 11 January 2020

WiPP: workflow for improved peak picking for gas chromatography-mass spectrometry (GC-MS) data.
Borgsmüller, N. and Gloaguen, Y. and Opialla, T. and Blanc, E. and Sicard, E. and Royer, A.L. and Le Bizec, B. and Durand, S. and Migné, C. and Pétéra, M. and Pujos-Guillot, E. and Giacomoni, F. and Guitton, Y. and Beule, D. and Kirwan, J.
bioRxiv : 713925. 24 July 2019

This list was generated on Sat Dec 3 02:22:16 2022 CET.
Open Access
MDC Library