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WiPP: Workflow for improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) data.
Borgsmüller, N. and Gloaguen, Y. and Opialla, T. and Blanc, E. and Sicard, E. and Royer, A.L. and Le Bizec, B. and Durand, S. and Migné, C. and Pétéra, M. and Pujos-Guillot, E. and Giacomoni, F. and Guitton, Y. and Beule, D. and Kirwan, J.
bioRxiv : 713925. 24 July 2019

Biobanking for metabolomics and lipidomics in precision medicine.
Kirwan, J.A. and Kaddurah-Daouk, R. and Mitchell, T. and Pischon, T. and Schmidt, M.A. and Velagapudi, V.
Clinical Chemistry 65 (7): 827-832. 28 June 2019

SorCS2 controls functional expression of amino acid transporter EAAT3 and protects neurons from oxidative stress and epilepsy-induced pathology.
Malik, A.R. and Szydlowska, K. and Nizinska, K. and Asaro, A. and van Vliet, E.A. and Popp, O. and Dittmar, G. and Fritsche-Guenther, R. and Kirwan, J.A. and Nykjaer, A. and Lukasiuk, K. and Aronica, E. and Willnow, T.E.
Cell Reports 26 (10): 2792-2804. 5 March 2019

Untargeted metabolomic analysis and pathway discovery in perinatal asphyxia and hypoxic-ischaemic encephalopathy.
Denihan, N.M. and Kirwan, J.A. and Walsh, B.H. and Dunn, W.B. and Broadhurst, D.I. and Boylan, G.B. and Murray, D.M.
Journal of Cerebral Blood Flow and Metabolism 39 (1): 147-162. January 2019


Comparison of modified Matyash method to conventional solvent systems for polar metabolite and lipid extractions.
Sostare, J. and Di Guida, R. and Kirwan, J. and Chalal, K. and Palmer, E. and Dunn, W.B. and Viant, M.R.
Analytica Chimica Acta 1037 : 301-315. 11 December 2018

Parasitic nematodes exert antimicrobial activity and benefit from microbiota-driven support for host immune regulation.
Rausch, S. and Midha, A. and Kuhring, M. and Affinass, N. and Radonic, A. and Kühl, A.A. and Bleich, A. and Renard, B.Y. and Hartmann, S.
Frontiers in Immunology 9 : 2282. October 2018

Silent witness: dual-species transcriptomics reveals epithelial immunological quiescence to helminth larval encounter and fostered larval development.
Ebner, F. and Kuhring, M. and Radonic, A. and Midha, A. and Renard, B.Y. and Hartmann, S.
Frontiers in Immunology 9 : 1868. 15 August 2018

Preanalytical processing and biobanking procedures of biological samples for metabolomics research: a white paper, community perspective (for "Precision Medicine and Pharmacometabolomics Task Group"-The Metabolomics Society Initiative).
Kirwan, J.A. and Brennan, L. and Broadhurst, D. and Fiehn, O. and Cascante, M. and Dunn, W.B. and Schmidt, M.A. and Velagapudi, V.
Clinical Chemistry 64 (8): 1158-1182. August 2018

MetExplore: collaborative edition and exploration of metabolic networks.
Cottret, L. and Frainay, C. and Chazalviel, M. and Cabanettes, F. and Gloaguen, Y. and Camenen, E. and Merlet, B. and Heux, S. and Portais, J.C. and Poupin, N. and Vinson, F. and Jourdan, F.
Nucleic Acids Research 46 (W1): W495-W502. 2 July 2018


Mass spectrometry based metabolomics comparison of liver grafts from donors after circulatory death (DCD) and donors after brain death (DBD) used in human orthotopic liver transplantation.
Hrydziuszko, O. and Perera, M.T.P.R. and Laing, R. and Kirwan, J. and Silva, M.A. and Richards, D.A. and Murphy, N. and Mirza, D.F. and Viant, M.R.
PLoS ONE 11 (11): e0165884. 11 November 2016

Metabolomics enables precision medicine: "A White Paper, Community Perspective".
Beger, R.D. and Dunn, W. and Schmidt, M.A. and Gross, S.S. and Kirwan, J.A. and Cascante, M. and Brennan, L. and Wishart, D.S. and Oresic, M. and Hankemeier, T. and Broadhurst, D.I. and Lane, A.N. and Suhre, K. and Kastenmüller, G. and Sumner, S.J. and Thiele, I. and Fiehn, O. and Kaddurah-Daouk, R.
Metabolomics 12 (9): 149. September 2016

Predicting chronic copper and nickel reproductive toxicity to Daphnia pulex-pulicaria from whole-animal metabolic profiles.
Taylor, N.S. and Kirwan, J.A. and Johnson, C. and Yan, N.D. and Viant, M.R. and Gunn, J.M. and McGeer, J.C.
Environmental Pollution 212 : 325-329. May 2016

Metabolomics confirms that dissolved organic carbon mitigates copper toxicity.
Taylor, N.S. and Kirwan, J.A. and Yan, N.D. and Viant, M.R. and Gunn, J.M. and McGeer, J.C.
Environmental Toxicology and Chemistry 35 (3): 635-644. March 2016

Omega-3 and alpha-tocopherol provide more protection against contaminants in novel feeds for Atlantic salmon (Salmo salar L.) than omega-6 and gamma tocopherol.
Søfteland, L. and Berntssen, M.H.G. and Kirwan, J.A. and Størseth, T.R. and Viant, M.R. and Torstensen, B.E. and Waagbø, R. and Olsvik, P.A.
Toxicology Reports 3 : 211-224. 14 January 2016


Toxicological effect of single contaminants and contaminant mixtures associated with plant ingredients in novel salmon feeds.
Søfteland, L. and Kirwan, J.A. and Hori, T.S.F. and Størseth, T.R. and Sommer, U. and Berntssen, M.H.G. and Viant, M.R. and Rise, M.L. and Waagbø, R. and Torstensen, B.E. and Booman, M. and Olsvik, P.A.
Food and Chemical Toxicology 73 : 157-174. November 2014

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control.
Kirwan, J.A. and Weber, R.J.M. and Broadhurst, D.I. and Viant, M.R.
Scientific Data 1 : 140012. 10 June 2014


Metabolomics for the practising vet.
Kirwan, J.
In Practice 35 (8): 438-445. September 2013

Characterising and correcting batch variation in an automated direct infusion mass spectrometry (DIMS) metabolomics workflow.
Kirwan, J.A. and Broadhurst, D.I. and Davidson, R.L. and Viant, M.R.
Analytical and Bioanalytical Chemistry 405 (15): 5147-5157. June 2013


Fumarate is cardioprotective via activation of the Nrf2 antioxidant pathway.
Ashrafian, H. and Czibik, G. and Bellahcene, M. and Aksentijević, D. and Smith, A.C. and Mitchell, S.J. and Dodd, M.S. and Kirwan, J. and Byrne, J.J. and Ludwig, C. and Isackson, H. and Yavari, A. and Støttrup, N.B. and Contractor, H. and Cahill, T.J. and Sahgal, N. and Ball, D.R. and Birkler, R.I.D. and Hargreaves, I. and Tennant, D.A. and Land, J. and Lygate, C.A. and Johannsen, M. and Kharbanda, R.K. and Neubauer, S. and Redwood, C. and de Cabo, R. and Ahmet, I. and Talan, M. and Günther, U.L. and Robinson, A.J. and Viant, M.R. and Pollard, P.J. and Tyler, D.J. and Watkins, H.
Cell Metabolism 15 (3): 361-371. 7 March 2012


Metabolomics: an emerging post-genomic tool for nutrition.
Whitfield, P. and Kirwan, J.
In: Genomics, proteomics, and metabolomics in nutraceuticals and functional foods. Blackwell Publishing, 271-285. ISBN 9780813814025 25 March 2010


Biomarker discovery in animal health and disease: the application of post-genomic technologies.
Moore, R.E. and Kirwan, J. and Doherty, M.K. and Whitfield, P.D.
Biomarker Insights 2 : 185-196. 1 January 2007


Parasites and their control in South American camelids in the United Kingdom.
Tait, S.A. and Kirwan, J.A. and Fair, C.J. and Coles, G.C. and Stafford, K.A.
Veterinary Record 150 (20): 637-638. 18 May 2002

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