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Jump to: 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2010 | 2009 | 2006 | 2005

2018

Spatial transcriptomics of C. elegans males and hermaphrodites identifies sex-specific differences in gene expression patterns.
Ebbing, A. and Vértesy, Á. and Betist, M.C. and Spanjaard, B. and Junker, J.P. and Berezikov, E. and van Oudenaarden, A. and Korswagen, H.C.
Developmental Cell 8 November 2018 (In Press)

Spatial transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes.
Ebbing, A. and Vertesy, A. and Betist, M. and Spanjaard, B. and Junker, J.P. and van Oudenaarden, A. and Berezikov, E. and Korswagen, H.
bioRxiv : 348201. 15 June 2018

Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars.
Spanjaard, B. and Hu, B. and Mitic, N. and Olivares-Chauvet, P. and Janjuha, S. and Ninov, N. and Junker, J.P.
Nature Biotechnology 36 (5): 469-473. May 2018

2017

Methods for lineage tracing on the organism-wide level.
Spanjaard, B. and Junker, J.P.
Current Opinion in Cell Biology 49 : 16-21. December 2017

Massively parallel single cell lineage tracing using CRISPR/Cas9 induced genetic scars.
Spanjaard, B. and Hu, B. and Mitic, N. and Junker, J.P.
bioRxiv : 205971. 19 October 2017

Tomo-seq identifies SOX9 as a key regulator of cardiac fibrosis during ischemic injury.
Lacraz, G.P.A. and Junker, J.P. and Gladka, M.M. and Molenaar, B. and Scholman, K.T. and Vigil-Garcia, M. and Versteeg, D. and de Ruiter, H. and Vermunt, M.W. and Creyghton, M.P. and Huibers, M.M.H. and de Jonge, N. and van Oudenaarden, A. and van Rooij, E.
Circulation 136 (15): 1396-1409. 10 October 2017

Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations.
van den Brink, S.C. and Sage, F. and Vertesy, A. and Spanjaard, B. and Peterson-Maduro, J. and Baron, C.S. and Robin, C. and van Oudenaarden, A.
Nature Methods 14 (10): 935-936. 29 September 2017

Massively parallel clonal analysis using CRISPR/Cas9 induced genetic scars.
Junker, J.P. and Spanjaard, B. and Peterson-Maduro, J. and Alemany, A. and Hu, B. and Florescu, M. and van Oudenaarden, A.
bioRxiv : 056499. 4 January 2017

Patched receptors sense, interpret and establish an epidermal Hedgehog signalling gradient.
Adolphe, C. and Junker, J.P. and Lyubimova, A. and van Oudenaarden, A. and Wainwright, B.
Journal of Investigative Dermatology 137 (1): 179-186. January 2017

2016

Spatially resolved genome-wide transcriptional profiling identifies BMP signaling as essential regulator of zebrafish cardiomyocyte regeneration.
Wu, C.C. and Kruse, F. and Vasudevarao, M.D. and Junker, J.P. and Zebrowski, D.C. and Fischer, K. and Noel, E.S. and Gruen, D. and Berezikov, E. and Engel, F.B. and van Oudenaarden, A. and Weidinger, G. and Bakkers, J.
Developmental Cell 36 (1): 36-49. 11 January 2016

Tomo-seq: A method to obtain genome-wide expression data with spatial resolution.
Kruse, F. and Junker, J.P. and van Oudenaarden, A. and Bakkers, J.
Methods in Cell Biology 135 : 299-307. 2016

2015

A gene regulatory program for meiotic prophase in the fetal ovary.
Soh, Y.Q.S. and Junker, J.P. and Gill, M.E. and Mueller, J.L. and van Oudenaarden, A. and Page, D.C.
PLoS Genetics 11 (9): e1005531. 17 September 2015

DAZL regulates Tet1 translation in murine embryonic stem cells.
Welling, M. and Chen, H.H. and Muñoz, J. and Musheev, M.U. and Kester, L. and Junker, J.P. and Mischerikow, N. and Arbab, M. and Kuijk, E. and Silberstein, L. and Kharchenko, P.V. and Geens, M. and Niehrs, C. and van de Velde, H. and van Oudenaarden, A. and Heck, A.J. and Geijsen, N.
EMBO Reports 16 (7): 791-802. July 2015

Single-cell transcriptomics enters the age of mass production.
Junker, J.P. and van Oudenaarden, A.
Molecular Cell 58 (4): 563-564. 21 May 2015

Licensing of primordial germ cells for gametogenesis depends on genital ridge signaling.
Hu, Y.C. and Nicholls, P.K. and Soh, Y.Q.S. and Daniele, J.R. and Junker, J.P. and van Oudenaarden, A. and Page, D.C.
PLoS Genetics 11 (3): e1005019. 4 March 2015

Ascl2 acts as an R-spondin/Wnt-responsive switch to control stemness in intestinal crypts.
Schuijers, J. and Junker, J.P. and Mokry, M. and Hatzis, P. and Koo, B.K. and Sasselli, V. and van der Flier, L.G. and Cuppen, E. and van Oudenaarden, A. and Clevers, H.
Cell Stem Cell 16 (2): 158-170. 5 February 2015

2014

A predictive model of bifunctional transcription factor signaling during embryonic tissue patterning.
Junker, J.P. and Peterson, K.A. and Nishi, Y. and Mao, J. and McMahon, A.P. and van Oudenaarden, A.
Developmental Cell 31 (4): 448-460. 24 November 2014

Genome-wide RNA tomography in the zebrafish embryo.
Junker, J.P. and Noël, E.S. and Guryev, V. and Peterson, K.A. and Shah, G. and Huisken, J. and McMahon, A.P. and Berezikov, E. and Bakkers, J. and van Oudenaarden, A.
Cell 159 (3): 662-675. 23 October 2014

Every cell is special: genome-wide studies add a new dimension to single-cell biology.
Junker, J.P. and van Oudenaarden, A.
Cell 157 (1): 8-11. 27 March 2014

2013

Single-molecule mRNA detection and counting in mammalian tissue.
Lyubimova, A. and Itzkovitz, S. and Junker, J.P. and Fan, Z.P. and Wu, X. and van Oudenaarden, A.
Nature Protocols 8 (9): 1743-1758. September 2013

2012

Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning.
Peterson, K.A. and Nishi, Y. and Ma, W. and Vedenko, A. and Shokri, L. and Zhang, X. and McFarlane, M. and Baizabal, J.M. and Junker, J.P. and van Oudenaarden, A. and Mikkelsen, T. and Bernstein, B.E. and Bailey, T.L. and Bulyk, M.L. and Wong, W.H. and McMahon, A.P.
Genes & Development 26 (24): 2802-2816. 15 December 2012

Identification of molecular compartments and genetic circuitry in the developing mammalian kidney.
Yu, J. and Valerius, M.T. and Duah, M. and Staser, K. and Hansard, J.K. and Guo, J.J. and McMahon, J. and Vaughan, J. and Faria, D. and Georgas, K. and Rumballe, B. and Ren, Q. and Krautzberger, A.M. and Junker, J.P. and Thiagarajan, R.D. and Machanick, P. and Gray, P.A. and van Oudenaarden, A. and Rowitch, D.H. and Stiles, C.D. and Ma, Q. and Grimmond, S.M. and Bailey, T.L. and Little, M.H. and McMahon, A.P.
Development 139 (10): 1863-1873. May 2012

When noisy neighbors are a blessing: analysis of gene expression noise identifies coregulated genes.
Junker, J.P. and van Oudenaarden, A.
Molecular Cell 45 (4): 437-438. 24 February 2012

2010

Evidence for a broad transition-state ensemble in calmodulin folding from single-molecule force spectroscopy.
Junker, J.P. and Rief, M.
Angewandte Chemie International Edition in English 49 (19): 3306-3309. 26 April 2010

2009

Single-molecule force spectroscopy distinguishes target binding modes of calmodulin.
Junker, J.P. and Rief, M.
Proceedings of the National Academy of Sciences of the United States of America 106 (34): 14361-14366. 25 August 2009

Ligand-dependent equilibrium fluctuations of single calmodulin molecules.
Junker, J.P. and Ziegler, F. and Rief, M.
Science 323 (5914): 633-637. 30 January 2009

2006

Cysteine engineering of polyproteins for single-molecule force spectroscopy.
Dietz, H. and Bertz, M. and Schlierf, M. and Berkemeier, F. and Bornschloegl, T. and Junker, J.P. and Rief, M.
Nature Protocols 1 (1): 80-84. 2006

2005

Influence of substrate binding on the mechanical stability of mouse dihydrofolate reductase.
Junker, J.P. and Hell, K. and Schlierf, M. and Neupert, W. and Rief, M.
Biophysical Journal 89 (5): L46-L48. November 2005

This list was generated on Sun Nov 18 02:21:11 2018 CET.
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