Dataset

Resource data for: Rapid UPF1 depletion illuminates the temporal dynamics of the NMD-regulated human transcriptome.
Boehm, Volker, Wallmeroth, Damaris, Wulf, Paul, Popp, Oliver, Teixeira Alves, Luiz Gustavo, Reinecke, Lucie, Riedel, Maximilian, Wyler, Emanuel, Franitza, Marek, Becker, Kerstin, Polkovnychenko, Karina, Del Giudice, Simone, Benlasfer, Nouhad, Mertins, Philipp, Landthaler, Markus and Gehring, Niels H.
[Dataset] 18 March 2026

Indole-3 acetate limits dysbiosis-driven diastolic failure via Hcrt neurons.
Zakarauskas-Seth, Bhakti Irene
[Dataset] March 2026

Panchamahabhuta Genomics: Tridosha disease prediction model.
Pande, Amit
[Dataset] 10 February 2026

Dataset for article "Somatosensory input drives membrane potential dynamics in motor cortex during voluntary limb movement".
Voigt, Birgit, Rau, Florian, Estebanez, Luc and Poulet, James
[Dataset] 15 January 2026

Bidirectional editing unveils gene interactions in human brain evolution.
Vitriolo, Alessandro and Skaros, Adrianos
[Dataset] 31 December 2025

PhytClust.
Ganesan, Katyayni, Kaufmann, Tom and Schwarz, Roland
[Dataset] 11 December 2025

PET/CT-guided management of immune checkpoint blockade and post-treatment multi-modal profiling in long-term responders with metastatic lung cancer in the National Network Genomic Medicine Lung Cancer Germany (nNGM).
Bischoff, Philip and Franzen, Jannik
[Dataset] 4 December 2025

The dorsal aortic compartment is a developmental source of brown adipose tissue in mice.
Secener, Kerim, Pöhle-Kronawitter, Sophie, Fischer, Cornelius, Vallecillo García, Pedro, Kotsaris, Georgios, Pawolski, Verena, Giesecke-Thiel, Claudia, Conrad, Thomas, Schulz, Tim J., Sauer, Sascha and Stricker, Sigmar
[Dataset] 2 December 2025

Metabolic inflammation, brain age and cognitive functioning in short- and long-term clinical weight loss trials.
Maurer, Lukas and Weygandt, Martin
[Dataset] 1 December 2025

Ex-vivo dataset for validation of MRI-based axon radius mapping.
Starke, L., Gladytz, T., Tasbihi, E., Periquito, J., Pohlmann, A. and Niendorf, T.
[Dataset] 26 November 2025

Altered cholesterol immunometabolism activates the macrophage NLRP3-inflammasome in lung fibrosis.
Giambelluca, Sonia, Pennitz, Peter and Manukyan, Artür
[Dataset] 21 November 2025

DeBCR: trained model weights for fluorescence microscopy image enhancement.
Li, Rui, Yushkevich, Artsemi, Chu, Xiaofeng, Kudryashev, Mikhail and Yakimovich, Artur
[Dataset] 21 November 2025

Iterative Bleaching Extends Multiplexity (IBEX) Knowledge-Base.
Yaniv, Ziv, Anidi, Ifeanyichukwu, Arakkal, Leanne, Arroyo-Mejias, Armando, Beuschel, Rebecca T., Börner, Katy, Chu, Colin J., Clark, Beatrice, Clatworthy, Menna, Colautti, Jake, Croteau, Joshua, Denha, Saven, Dever, Rose, Dutra, Walderez, Fritzsche, Sonja, Fullam, Spencer, Gerner, Michael, Gola, Anita, Gollob, Kenneth J., Ichise, Hiroshi, Jing, Zhixin, Jonigk, Danny, Kandov, Evelyn, Kastenmüller, Wolfgang, Koenig, Joshua F.E., Kortekaas, Rosa K., Kothurkar, Aanandita, Krzywańska, Aleksandra, Lamborn, Ian, Lin, Yuri, Luz, Jean Carlos Dos Santos, Makranz, Chen, McNamara, George, Moriarty, Ryan V., Murakami Olyntho, Vitoria, Padhan, Kartika, Richoz, Nathan, Shang, Wanjing, Shi, Lihong, Shih, Rochelle, Speranza, Emily, Teichmann, Sarah, Veres, Tibor Z., Vierhout, Megan, Wachter, Brianna, Wade-Vallance, Adam K., Williams, Margaret, Zangger, Nathan, Germain, Ronald N. and Radtke, Andrea J.
[Dataset] 26 September 2025

Code and pre-processed data for figure reproducibility of the manuscript 'Spatiotemporal dynamics of tumour microenvironment remodelling' Lisek, Theurillat, Pentimalli et al., bioRxiv 2025.
Pentimalli, Tancredi Massimo
[Dataset] 15 September 2025

Nanoscale dynamics of enhancer-promoter interactions during exit from pluripotency.
Stumberger, Gabriela, Hörl, David, Tsouraki, Dimitra, Steinek, Clemens, Oudelaar, Aukje Marieke, Leonhardt, Heinrich and Harz, Hartmann
[Dataset] 14 September 2025

Extended supplementary data for manuscript: Gene regulatory mechanisms of cellular memory of a single cocaine exposure in VTA dopaminergic neurons.
Zea-Redondo, Luna, Franke, Vedran, Paul, Eleanor J., Kukalev, Alexander, Arguedas Jimenez, Laura, Braeuning, Caroline, Marin, Oscar, Akalin, Altuna, Ungless, Mark A., Winick-Ng, Warren and Pombo, Ana
[Dataset] 4 September 2025

Analysis of calcium spike trains in HEK293 cells.
Azzoni, Caterina, Sporbert, Anje, Jüttner, Rene, Gotthardt, Michael, Roderick, Llewelyn and Falcke, Martin
[Dataset] September 2025

Fluorescence intensity data from HEK293 Ca(2+) spike trains.
Azzoni, Caterina, Sporbert, Anje, Jüttner, Rene, Gotthardt, Michael, Roderick, Llewelyn and Falcke, Martin
[Dataset] September 2025

Flexynesis tutorials input data.
Naghsh Nilchi, Amirhossein and Uyar, Bora
[Dataset] 21 July 2025

openDVP tutorial dataset.
Fritzsche, Sonja and Nimo, Jose
[Dataset] 7 July 2025

Open-source cardiac MR fingerprinting.
Kolbitsch, Christoph, Schuenke, Patrick, Redshaw Kranich, Catarina, Schattenfroh, Jakob, Reisdorf, Philine, Anders, Matthias and Kofler, Andreas
[Dataset] 7 July 2025

Single-cell multiome and spatial profiling reveals pancreas cell type-specific gene regulatory programs driving type 1 diabetes progression.
Melton, Rebecca, Jimenez, Sara, Elison, Weston, Tucciarone, Luca, Howell, Abigail, Wang, Gaowei, Berti, Denise, Beebe, Elisha, Miller, Michael, Zeng, Chun, McGrail, Carolyn, VanderStel, Kennedy, Korgaonkar, Katha, Elgamal, Ruth, Mummey, Hannah, Chiou, Joshua, Griffin, Emily, Kusmartseva, Irina, Atkinson, Mark, Preissl, Sebastian, Theis, Fabian, Sander, Maike and Gaulton, Kyle
[Dataset] 3 July 2025

Supplementary datasets for the study "Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond".
Uyar, Bora
[Dataset] July 2025

PocketVina enables scalable and highly accurate physically valid docking through multi-pocket conditioning.
Sarigun, Ahmet, Uyar, Bora, Franke, Vedran and Akalin, Altuna
[Dataset] 24 June 2025

Phantom validation data for the paper: Simultaneous T2, T2*, and R2′ mapping for multiple sclerosis using model-based reconstruction of undersampled radial RARE-EPI MRI.
Velasquez-Vides, Jose Raul
[Dataset] 2 June 2025

openDVP multiplex immunofluorescence demo.
Nimo, Jose and Fritzsche, Sonja
[Dataset] 13 May 2025

IL-36 signaling as a drug target in Crohn's disease patients with IL36RN mutations.
Hecker, Julia, Plattner, Christina, Cancino, Camila A., Löscher, Britt-Sabina, Saurenbach, Judith, Letizia, Marilena, Rieder, Dietmar, Freise, Inka, Koop, Kristina, Neufert, Clemens, Dunkel, Desirée, Al Khatim, Zainab, Schaafs, Lars-Arne, Schütz, Anja, Becker, Christoph, Altreya, Raja, Trajanoski, Zlatko, Franke, Andre, Sonnenberg, Elena, Hegazy, Ahmed N., Siegmund, Britta and Weidinger, Carl
[Dataset] 11 April 2025

Spatial profiling of human pancreas during type 1 diabetes progression.
Jiménez, Sara, Sander, Maike, Theis, Fabian and Gaulton, Kyle
[Dataset] 14 February 2025

Ultra-high scale cytometry-based cellular interaction mapping - Data repository.
Vonficht, Dominik, Jopp-Saile, Lea, Yousefian, Schayan, Flore, Viktoria, Simó Vesperinas, Inés, Teuber, Ruth, Avanesyan, Bogdan, Luo, Yanjiang, Röthemeier, Caroline, Grünschläger, Florian, Fernandez-Vaquero, Mirian, Fregona, Vincent, Ordoñez-Rueda, Diana, Schmalbrock, Laura K., Deininger, Luca, Yamachui Sitcheu, Angelo Jovin, Gu, Zuguang, Funk, Maja C., Mikut, Ralf, Heikenwälder, Mathias, Eggert, Angelika, von Stackelberg, Arend, Kobold, Sebastian, Krönke, Jan, Keller, Ulrich, Trumpp, Andreas, Hegazy, Ahmed N., Eckert, Cornelia, Hübschmann, Daniel and Haas, Simon
[Dataset] 16 January 2025

A kinetics-based model of hematopoiesis reveals extrinsic regulation of skewed lineage output from stem cells - data repository.
Grünschläger, Florian, Rodriguez-Correa, Esther, Nizharadze, Tamar, Sedlmeier, Anastasia, Hübschmann, Daniel and Haas, Simon
[Dataset] January 2025

Extended supplementary data for manuscript: Specialised super-enhancer networks in stem cells and neurons.
Harabulă, Izabela, Speakman, Liam, Musella, Francesco, Fiorillo, Luca, Zea-Redondo, Luna, Kukalev, Alexander, Beagrie, Robert A., Morris, Kelly J., Fernandes, Lucas, Irastorza-Azcarate, Ibai, Fernandes, Ana M., Carvalho, Silvia, Szabó, Dominik, Ferrai, Carmelo, Nicodemi, Mario, Welch, Lonnie and Pombo, Ana
[Dataset] 2025

The cellular and molecular cardiac tissue responses in human inflammatory cardiomyopathies following SARS-CoV-2 infection and COVID-19 vaccination.
Maatz, Henrike, Lindberg, Eric L., Adami, Eleonora, Lopez-Anguita, Natalia, Hübner, Norbert and Tschöpe, Carsten
[Dataset] 2 December 2024

Open-source cardiac MR fingerprinting.
Kolbitsch, Christoph, Schuenke, Patrick, Redshaw Kranich, Catarina, Schattenfroh, Jakob, Reisdorf, Philine and Anders, Matthias
[Dataset] 30 November 2024

1D cell trajectories as studied in "Cell-mechanical parameter estimation from 1D cell trajectories using simulation-based inference".
Heyn, Johannes, Atienza Juanatey, Miguel, Falcke, Martin and Rädler, Joachim
[Dataset] 3 September 2024

Iterative Bleaching Extends Multiplexity (IBEX) Knowledge-Base.
Fritzsche, S.
[Dataset] 29 July 2024

Data from: Denoising, deblurring, and optical deconvolution for cryo-ET and light microscopy with a physics-informed deep neural network DeBCR.
Li, Rui, Yushkevich, Artsemi, Chu, Xiaofeng, Kudryashev, Mikhail and Yakimovich, Arturo
[Dataset] 4 July 2024

Mutational topography reflects clinical neuroblastoma heterogeneity.
Rodriguez-Fos, Elias, Planas-Fèlix, Mercè, Burkert, Martin, Puiggròs, Montserrat, Toedling, Joern, Thiessen, Nina, Blanc, Eric, Szymansky, Annabell, Hertwig, Falk, Ishaque, Naveed, Beule, Dieter, Torrents, David, Eggert, Angelika, Koche, Richard P., Schwarz, Roland F., Haase, Kerstin, Schulte, Johannes H. and Henssen, Anton G.
[Dataset] 27 April 2023

Iterative Bleaching Extends Multiplexity (IBEX) Knowledge-Base.
Fritzsche, Sonja
[Dataset] 3 March 2023

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies.
Reichart, D., Lindberg, E.L., Maatz, H., Milting, H., Noseda, M., Oudit, G.Y., Heinig, M., Seidman, J., Hubner, N. and Seidman, C.E.
[Dataset] 22 August 2022