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Tools
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| Item Type: | Dataset |
|---|---|
| Title: | Antibiotic Resistance Gene detection on the Global Microbial Gene Catalog |
| Creators: |
Inda Díaz, Juan Salvador  ORCID: https://orcid.org/0000-0002-3735-8300, Adegoke, Faith ORCID: https://orcid.org/0000-0003-3835-590X, Löber, Ulrike ORCID: https://orcid.org/0000-0001-7468-9531, Jarquín-Díaz, Víctor Hugo ORCID: https://orcid.org/0000-0003-3758-1091, Duan, Yiqian ORCID: https://orcid.org/0000-0002-8046-9831, Bengtsson-Palme, Johan ORCID: https://orcid.org/0000-0002-6528-3158, Ugarcina Perovic, Svetlana ORCID: https://orcid.org/0000-0001-7907-1597 and Coelho, Luis Pedro ORCID: https://orcid.org/0000-0002-9280-7885
|
| Abstract: | This dataset supports the results presented in the manuscript: The elusive resistome: a global comparison reveals large discrepancies among detection pipelines. It contains antibiotic resistance gene (ARG) detection results from unigenes in the Global Microbial Gene Catalog v1.0 (GMGC) using multiple widely used detection pipelines (including DeepARG, RGI, fARGene, ResFinder, AMRFinderPlus, and ABRicate with multiple databases). Outputs were harmonized using argNorm and manually curated, estimations of ARG abundance and richness as well as pan- and core-resistome were done across 11,519 metagenomic samples spanning 13 habitats (human-associated, animal-associated, and environmental), at the ARG class level. This resource supports comparative analyses of how ARG detection pipelines influence resistome interpretation. |
| Source: | Zenodo |
| Publisher: | CERN |
| Date: | 23 April 2026 |
| Official Publication: | https://doi.org/10.5281/zenodo.19702877 |
| Related to: |
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