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| Item Type: | Dataset |
|---|---|
| Title: | Nanoscale dynamics of enhancer-promoter interactions during exit from pluripotency |
| Creators: |
Stumberger, Gabriela  ORCID: https://orcid.org/0000-0002-5630-0032, Hörl, David ORCID: https://orcid.org/0000-0003-1710-1708, Tsouraki, Dimitra ORCID: https://orcid.org/0009-0006-1428-6718, Steinek, Clemens ORCID: https://orcid.org/0000-0003-3590-2103, Oudelaar, Aukje Marieke ORCID: https://orcid.org/0000-0002-4016-6158, Leonhardt, Heinrich ORCID: https://orcid.org/0000-0002-5086-6449 and Harz, Hartmann ORCID: https://orcid.org/0000-0003-1218-2107
|
| Abstract: | This Zenodo repository contains data generated for our manuscript. It contains: fig1.csv: Color/shift corrected, pairwise enhancer-promoter coordinates [µm] and distances [µm], in naive and primed mouse embryonic stem cells (mESCs), measured with a spinning disk confocal microscope. Related to Fig 1. fig2.csv: Multiway enhancer-promoter coordinates [µm] and distances for promoters with all their enhnacers [µm], in naive and primed mESCs, measured with a STED mircoscope. Related to Fig 2 D-G and Supplementary Fig S9. fig3.csv: Coordinates [µm] and distances between the promoter [µm] (Nanog or Dppa3), its closest ehnacer and closest intron RNA, in naive mESCs, measured with a STED microscope in confocal mode. Related to Fig 3 and Supplementary Fig S10 C. figS10.csv: Coordinates [µm] and distances between the Nanog promoter [µm], its 3 enhancers (-5, -45, +60) and closest intron RNA, in naive mESCs, measured with a STED microscope. Related to Supplementary Fig S10 D. region_coordinates_mm9.bed: Target names (promoters and enhnacers by the distance from their promoter) and the coordinates of the probed genomic region in mm9. |
| Source: | Zenodo |
| Publisher: | CERN |
| Date: | 14 September 2025 |
| Official Publication: | https://doi.org/10.5281/zenodo.17115347 |
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