Article

Quantification of insect genome divergence.
Zdobnov, E.M. and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Trends in Genetics 23 (1): 16-20. January 2007

Computational characterization of multiple Gag-like human proteins.
Campillos, M., Doerks, T., Shah, P.K. and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Trends in Genetics 22 (11): 585-589. November 2006

A whole lotta jumpin' goin' on: new transposon tools for vertebrate functional genomics.
Ivics, Z. ORCID: https://orcid.org/0000-0002-7803-6658 and Izsvak, Z. ORCID: https://orcid.org/0000-0002-2053-2384
Trends in Genetics 21 (1): 8-11. 1 January 2005

Global analysis of bacterial transcription factors to predict cellular target processes.
Doerks, T., Andrade, M.A. ORCID: https://orcid.org/0000-0001-6650-1711, Lathe, W., von Mering, C. ORCID: https://orcid.org/0000-0001-7734-9102 and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Trends in Genetics 20 (3): 126-131. 1 January 2004

Increase of functional diversity by alternative splicing.
Kriventseva, E.V., Koch, I., Apweiler, R., Vingron, M., Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X, Gelfand, M.S. and Sunyaev, S.
Trends in Genetics 19 (3): 124-128. March 2003

Integration of genome data and protein structures: prediction of protein folds, protein interactions and 'molecular phenotypes' of single nucleotide polymorphisms (Reprinted from Current Opinion in Structural Biology, vol 11, pg 125-130, 2001).
Sunyaev, S.R., Lathe, W. and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Trends in Genetics (Suppl. March): S19-S24. March 2002

Genomics boosts mouse molecular genetics.
Birchmeier, C. ORCID: https://orcid.org/0000-0002-2041-8872 and Treier, M. ORCID: https://orcid.org/0000-0002-8751-1246
Trends in Genetics 17 (12): 691-692. 1 December 2001

Inversions and the dynamics of eukaryotic gene order.
Huynen, M.A., Snel, B. and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Trends in Genetics 17 (6): 304-306. 1 June 2001

Identification and analysis of eukaryotic promoters: recent computational approaches.
Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116 and Niemann, H.
Trends in Genetics 17 (2): 56-60. February 2001

Evolution of prokaryotic gene order: genome rearrangements in closely related species.
Suyama, M. and Bork, P.
Trends in Genetics 17 (1): 10-13. 1 January 2001

SNP frequencies in human genes - an excess of rare alleles and differing modes of selection.
Sunyaev, S.R., Lathe, W.C., Ramensky, V.E. and Bork, P.
Trends in Genetics 16 (8): 335-337. 1 August 2000

Protein annotation: detective work for function prediction.
Doerks, T., Bairoch, A. and Bork, P.
Trends in Genetics 14 : 248-250. 1 January 1998

Go hunting in sequence databases but watch out for the traps.
Bork, P. and Bairoch, A.
Trends in Genetics 12 : 425-427. 1 January 1996

Identification of mammalian cell clones exhibiting highly regulated expression from inducible promoters.
Kirchhoff, S., Koster, M., Wirth, M., Schaper, F., Gossen, M., Bujard, H. and Hauser, H.
Trends in Genetics 11 (6): 219-220. June 1995

Review

Intricacies of single-cell multi-omics data integration.
Rautenstrauch, P. ORCID: https://orcid.org/0000-0002-0070-4759, Vlot, A.H.C. ORCID: https://orcid.org/0000-0001-9538-987X, Saran, S. ORCID: https://orcid.org/0009-0001-0561-6328 and Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116
Trends in Genetics 38 (2): 128-139. February 2022

Gene therapy with the Sleeping Beauty transposon system.
Kebriaei, P., Izsvák, Z. ORCID: https://orcid.org/0000-0002-2053-2384, Narayanavari, S.A. ORCID: https://orcid.org/0000-0002-6997-4829, Singh, H. and Ivics, Z. ORCID: https://orcid.org/0000-0002-7803-6658
Trends in Genetics 33 (11): 852-870. November 2017

Beyond read-counts: Ribo-seq data analysis to understand the functions of the transcriptome.
Calviello, L. ORCID: https://orcid.org/0000-0002-5600-0988 and Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116
Trends in Genetics 33 (10): 728-744. October 2017

Breaking TADs: how alterations of chromatin domains result in disease.
Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Spielmann, M. and Mundlos, S.
Trends in Genetics 32 (4): 225-237. April 2016

The route to spinal cord cell types: a tale of signals and switches.
Gouti, M. ORCID: https://orcid.org/0000-0001-7422-1605, Metzis, V. and Briscoe, J.
Trends in Genetics 31 (6): 282-289. June 2015

How to become a parasite - lessons from the genomes of nematodes.
Dieterich, C. ORCID: https://orcid.org/0000-0001-9468-6311 and Sommer, R.J.
Trends in Genetics 25 (5): 203-209. May 2009

Transcriptional regulators in kidney disease: gatekeepers of renal homeostasis.
Uhlenhaut, N.H. ORCID: https://orcid.org/0000-0002-4220-4779 and Treier, M. ORCID: https://orcid.org/0000-0002-8751-1246
Trends in Genetics 24 (7): 361-371. July 2008

SHOT: a web server for the construction of genome phylogenies.
Korbel, J.O., Snel, B., Huynen, M.A. and Bork, P.
Trends in Genetics 18 : 158-162. 1 March 2002

Resident aliens: the Tc1/mariner superfamily of transposable elements.
Plasterk, R.H., Izsvak, Z. ORCID: https://orcid.org/0000-0002-2053-2384 and Ivics, Z. ORCID: https://orcid.org/0000-0002-7803-6658
Trends in Genetics 15 : 326-332. 1 August 1999

Letter

Differential genome display.
Huynen, M.A., Diaz-Lazcoz, Y. and Bork, P.
Trends in Genetics 13 : 389-390. 1 January 1997

Non-orthologous gene displacement.
Koonin, E.V., Mushegian, A.R. and Bork, P.
Trends in Genetics 12 : 334-336. 1 January 1996

Editorial

Making sense of proprioception.
Santuz, A. ORCID: https://orcid.org/0000-0002-6577-5101 and Zampieri, N. ORCID: https://orcid.org/0000-0002-2228-9453
Trends in Genetics 40 (1): 20-23. January 2024

Similar gene expression profiles do not imply similar tissue functions.
Yanai, I., Korbel, J.O., Boue, S., McWeeney, S.K., Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X and Lercher, M.J.
Trends in Genetics 22 (3): 132-138. March 2006

Modularity in the gain and loss of genes: applications for function prediction.
Ettema, T., van der Oost, J. and Huynen, M.
Trends in Genetics 17 (9): 485-487. September 2001

EST analysis online: WWW tools for detection of SNPs and alternative splice forms.
Brett, D., Lehmann, G., Hanke, J., Gross, S., Reich, J. and Bork, P.
Trends in Genetics 16 (9): 416-418. 1 September 2000

Towards a structural basis of human non-synonymous single nucleotide polymorphisms.
Sunyaev, S.R., Ramensky, V. and Bork, P.
Trends in Genetics 16 (5): 198-200. 1 May 2000

Genome evolution - gene fusion versus gene fission.
Snel, B., Bork, P. and Huynen, M.
Trends in Genetics 16 : 9-11. 1 January 2000

Alternative splicing of human genes - more the rule than the exception?
Hanke, J., Brett, D., Zastrow, I., Aydin, A. ORCID: https://orcid.org/0000-0002-2890-0225, Delbrueck, S., Lehmann, G., Luft, F.C. ORCID: https://orcid.org/0000-0002-8635-1199, Reich, J. and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Trends in Genetics 15 : 389-390. 1 October 1999