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Communications Physics

Artificial-intelligence-driven scanning probe microscopy.
Krull, A. and Hirsch, P. and Rother, C. and Schiffrin, A. and Krull, C.
Communications Physics 3 (1): 54. 19 March 2020

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference

An articulated statistical shape model for accurate hip joint segmentation.
Kainmueller, D. and Lamecker, H. and Zachow, S. and Hege, H.C.
In: 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 3-6 Sep 2009, Minneapolis, MN, USA. 13 September 2009

Development

Cell dynamics underlying oriented growth of the Drosophila wing imaginal disc.
Dye, N.A. and Popović, M. and Spannl, S. and Etournay, R. and Kainmüller, D. and Ghosh, S. and Myers, E.W. and Jülicher, F. and Eaton, S.
Development 144 (23): 4406-4421. 1 December 2017

Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos.
Stapel, L.C. and Lombardot, B. and Broaddus, C. and Kainmueller, D. and Jug, F. and Myers, E.W. and Vastenhouw, N.L.
Development 143 (3): 540-546. 1 February 2016

European Respiratory Journal

Plasma mediators in patients with severe COVID-19 cause lung endothelial barrier failure.
Michalick, L. and Weidenfeld, S. and Grimmer, B. and Fatykhova, D. and Solymosi, P.D. and Behrens, F. and Dohmen, M. and Brack, M.C. and Schulz, S. and Thomasch, E. and Simmons, S. and Müller-Redetzky, H. and Suttorp, N. and Kurth, F. and Neudecker, J. and Toennies, M. and Bauer, T.T. and Eggeling, S. and Corman, V.M. and Hocke, A.C. and Witzenrath, M. and Hippenstiel, S. and Kuebler, W.M.
European Respiratory Journal 57 (3): 2002384. 11 March 2021

IEEE Transactions on Medical Imaging

Comparison and evaluation of methods for liver segmentation from CT datasets.
Heimann, T. and van Ginneken, B. and Styner, M.A. and Arzhaeva, Y. and Aurich, V. and Bauer, C. and Beck, A. and Becker, C. and Beichel, R. and Bekes, G. and Bello, F. and Binnig, G. and Bischof, H. and Bornik, A. and Cashman, P.M.M. and Chi, Y. and Cordova, A. and Dawant, B.M. and Fidrich, M. and Furst, J.D. and Furukawa, D. and Grenacher, L. and Hornegger, J. and Kainmüller, D. and Kitney, R.I. and Kobatake, H. and Lamecker, H. and Lange, T. and Lee, J. and Lennon, B. and Li, R. and Li, S. and Meinzer, H.P. and Nemeth, G. and Raicu, D.S. and Rau, A.M. and van Rikxoort, E.M. and Rousson, M. and Rusko, L. and Saddi, K.A. and Schmidt, G. and Seghers, D. and Shimizu, A. and Slagmolen, P. and Sorantin, E. and Soza, G. and Susomboon, R. and Waite, J.M. and Wimmer, A. and Wolf, I.
IEEE Transactions on Medical Imaging 28 (8): 1251-1265. August 2009

Informatik aktuell

An articulated statistical shape model of the human knee.
Bindernagel, M. and Kainmueller, D. and Seim, H. and Lamecker, H. and Zachow, S. and Hege, H.C.
Informatik aktuell : 59-63. 2011

International Journal of Computer Assisted Radiology and Surgery

3D reconstruction of the human rib cage from 2D projection images using a statistical shape model.
Dworzak, J. and Lamecker, H. and von Berg, J. and Klinder, T. and Lorenz, C. and Kainmüller, D. and Seim, H. and Hege, H.C. and Zachow, S.
International Journal of Computer Assisted Radiology and Surgery 5 (2): 111-124. March 2010

Journal of Real-Time Image Processing

GPU-accelerated level-set segmentation.
Lamas-Rodríguez, J. and Heras, D.B. and Argüello, F. and Kainmueller, D. and Zachow, S. and Bóo, M.
Journal of Real-Time Image Processing 12 (1): 15-29. June 2016

Lecture Notes in Computer Science

Probabilistic deep learning for instance segmentation.
Rumberger, J.L. and Mais, L. and Kainmueller, D.
Lecture Notes in Computer Science 12535 : 445-457. 2021

PatchPerPix for instance segmentation.
Mais, L. and Hirsch, P. and Kainmueller, D.
Lecture Notes in Computer Science 12370 : 288-304. 20 November 2020

A benchmark for epithelial cell tracking.
Funke, J. and Mais, L. and Champion, A. and Dye, N. and Kainmueller, D.
Lecture Notes in Computer Science 11134 : 437-445. 23 January 2019

Uncertainty-driven forest predictors for vertebra localization and segmentation.
Richmond, D. and Kainmueller, D. and Glocker, B. and Rother, C. and Myers, G.
Lecture Notes in Computer Science 9349 : 653-660. 2015

Active graph matching for automatic joint segmentation and annotation of C. elegans.
Kainmueller, D. and Jug, F. and Rother, C. and Myers, G.
Lecture Notes in Computer Science 8673 : 81-88. 2014

Optimal joint segmentation and tracking of escherichia coli in the mother machine.
Jug, F. and Pietzsch, T. and Kainmüller, D. and Funke, J. and Kaiser, M. and van Nimwegen, E. and Rother, C. and Myers, G.
Lecture Notes in Computer Science 8677 : 25-36. 2014

Automatic detection and classification of teeth in CT data.
Duy, N.T. and Lamecker, H. and Kainmueller, D. and Zachow, S.
Lecture Notes in Computer Science 7510 : 609-616. 2012

Improving deformable surface meshes through omni-directional displacements and MRFs.
Kainmueller, D. and Lamecker, H. and Seim, H. and Zachow, S. and Hege, H.C.
Lecture Notes in Computer Science 6361 : 227-234. 2010

Automatic extraction of mandibular nerve and bone from cone-beam CT data.
Kainmueller, D. and Lamecker, H. and Seim, H. and Zinser, M. and Zachow, S.
Lecture Notes in Computer Science 5762 : 76-83. 2009

Coupling deformable models for multi-object segmentation.
Kainmueller, D. and Lamecker, H. and Zachow, S. and Hege, H.C.
Lecture Notes in Computer Science 5104 : 69-78. 2008

Medical Image Analysis

Omnidirectional displacements for deformable surfaces.
Kainmueller, D. and Lamecker, H. and Heller, M.O. and Weber, B. and Hege, H.C. and Zachow, S.
Medical Image Analysis 17 (4): 429-441. May 2013

Proceedings of SPIE

Level set segmentation of the heart from 4D phase contrast MRI.
Kainmuller, D. and Unterhinninghofen, R. and Ley, S. and Dillmann, R.
Proceedings of SPIE 6914 : 691414. 2008

Proceedings of the British Machine Vision Conference (BMVC)

Mapping auto-context decision forests to deep ConvNets for semantic segmentation.
Richmond, D. and Kainmueller, D. and Yang, M. and Myers, E. and Rother, C.
In: 27th British Machine Vision Conference, BMVC 2016, 19-22 Sep 2016, York, United Kingdom. September 2016

Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition

A convex relaxation for multi-graph matching.
Swoboda, P. and Kainmüller, D. and Mokarian, A. and Theobalt, C. and Bernard, F.
In: 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 16-20 Jun 2019, Long Beach, CA, USA. 2019

Science

Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites.
Veenvliet, J.V. and Bolondi, A. and Kretzmer, H. and Haut, L. and Scholze-Wittler, M. and Schifferl, D. and Koch, F. and Guignard, L. and Kumar, A.S. and Pustet, M. and Heimann, S. and Buschow, R. and Wittler, L. and Timmermann, B. and Meissner, A. and Herrmann, B.G.
Science 370 (6522): eaba4937. 11 December 2020

Scientific Reports

The cell adhesion protein CAR is a negative regulator of synaptic transmission.
Wrackmeyer, U. and Kaldrack, J. and Jüttner, R. and Pannasch, U. and Gimber, N. and Freiberg, F. and Purfürst, B. and Kainmueller, D. and Schmitz, D. and Haucke, V. and Rathjen, F.G. and Gotthardt, M.
Scientific Reports 9 (1): 6768. 1 May 2019

arXiv

Probabilistic deep learning for instance segmentation.
Rumberger, J.L. and Mais, L. and Kainmueller, D.
arXiv : 2008.10678. 24 August 2020

bioRxiv

Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.
Malin-Mayor, C. and Hirsch, P. and Guignard, L. and McDole, K. and Wan, Y. and Lemon, W.C. and Keller, P.J. and Preibisch, S. and Funke, J.
bioRxiv : 2021.07.28.454016. 29 July 2021

PatchPerPixMatch for automated 3d search of neuronal morphologies in light microscopy.
Mais, L. and Hirsch, P. and Managan, C. and Wang, K. and Rokicki, K. and Svirskas, R.R. and Dickson, B.J. and Korff, W. and Rubin, G.M. and Ihrke, G. and Meissner, G.W. and Kainmueller, D.
bioRxiv : 2021.07.23.453511. 26 July 2021

A connectome and analysis of the adult Drosophila central brain.
Scheffer, L.K. and Xu, C.S. and Januszewski, M. and Lu, Z. and Takemura, S. and Hayworth, K.J. and Huang, G.B. and Shinomiya, K. and Maitin-Shepard, J. and Berg, S. and Clements, J. and Hubbard, P. and Katz, W. and Umayam, L. and Zhao, T. and Ackerman, D. and Blakely, T. and Bogovic, J. and Dolafi, T. and Kainmueller, D. and Kawase, T. and Khairy, K.A. and Leavitt, L. and Li, P.H. and Lindsey, L. and Neubarth, N. and Olbris, D.J. and Otsuna, H. and Trautman, E.T. and Ito, M. and Goldammer, J. and Wolff, T. and Svirskas, R. and Schlegel, P. and Neace, E.R. and Knecht, C.J. and Alvarado, C.X. and Bailey, D.A. and Ballinger, S. and Borycz, J.A and Canino, B.S. and Cheatham, N. and Cook, M. and Dreher, M. and Duclos, O. and Eubanks, B. and Fairbanks, K. and Finley, S. and Forknall, N. and Francis, A. and Hopkins, G.P. and Joyce, E.M. and Kim, S.J. and Kirk, N.A. and Kovalyak, J. and Lauchie, S.A. and Lohff, A. and Maldonado, C. and Manley, E.A. and McLin, S. and Mooney, C. and Ndama, M. and Ogundeyi, O. and Okeoma, N. and Ordish, C. and Padilla, N. and Patrick, C. and Paterson, T. and Phillips, E.E. and Phillips, E.M. and Rampally, N. and Ribeiro, C. and Robertson, M.K. and Rymer, J.T. and Ryan, S.M. and Sammons, M. and Scott, A.K. and Scott, A.L. and Shinomiya, A. and Smith, C. and Smith, K. and Smith, N.L. and Sobeski, M.A. and Suleiman, A. and Swift, J. and Takemura, S. and Talebi, I. and Tarnogorska, D. and Tenshaw, E. and Tokhi, T. and Walsh, J.J. and Yang, T. and Horne, J.A. and Li, F. and Parekh, R. and Rivlin, P.K. and Jayaraman, V. and Ito, K. and Saalfeld, S. and George, R. and Meinertzhagen, I.A. and Rubin, G.M. and Hess, H.F. and Jain, V. and Plaza, S.M.
bioRxiv : 2020.04.07.030213. 9 April 2020

A connectome of the adult drosophila central brain.
Xu, C.S. and Januszewski, M. and Lu, Z. and Takemura, S. and Hayworth, K.J. and Huang, G. and Shinomiya, K. and Maitin-Shepard, J. and Ackerman, D. and Berg, S. and Blakely, T. and Bogovic, J. and Clements, J. and Dolafi, T. and Hubbard, P. and Kainmueller, D. and Katz, W. and Kawase, T. and Khairy, K.A. and Leavitt, L. and Li, P.H. and Lindsey, L. and Neubarth, N. and Olbris, D.J. and Otsuna, H. and Troutman, E.T. and Umayam, L. and Zhao, T. and Ito, M. and Goldammer, J. and Wolff, T. and Svirskas, R. and Schlegel, P. and Neace, E.R. and Knecht, C.J. and Alvarado, C.X. and Bailey, D.A. and Ballinger, S. and Borycz, J.A. and Canino, B.S. and Cheatham, N. and Cook, M. and Dreher, M. and Duclos, O. and Eubanks, B. and Fairbanks, K. and Finley, S. and Forknall, N. and Francis, A. and Hopkins, G.P. and Joyce, E.M. and Kim, S.J. and Kirk, N.A. and Kovalyak, J. and Lauchie, S.A. and Lohff, A. and Maldonado, C. and Manley, E.A. and McLin, S. and Mooney, C. and Ndama, M. and Ogundeyi, O. and Okeoma, N. and Ordish, C. and Padilla, N. and Patrick, C. and Paterson, T. and Phillips, E.E. and Phillips, E.M. and Rampally, N. and Ribeiro, C. and Robertson, M.K. and Rymer, J.T. and Ryan, S.M. and Sammons, M. and Scott, A.K. and Scott, A.L. and Shinomiya, A. and Smith, C. and Smith, K. and Smith, N.L. and Sobeski, M.A. and Suleiman, A. and Swift, J. and Takemura, S. and Talebi, I. and Tarnogorska, D. and Tenshaw, E. and Tokhi, T. and Walsh, J.J. and Yang, T. and Horne, J.A. and Li, F. and Parekh, R. and Rivlin, P.K. and Jayaraman, V. and Ito, K. and Saalfeld, S. and George, R. and Meinertzhagen, I. and Rubin, G.M. and Hess, H.F. and Scheffer, L.K. and Jain, V. and Plaza, S.M.
bioRxiv : 2020.01.21.911859. 21 January 2020

Cell dynamics underlying oriented growth of the Drosophila wing imaginal disc.
Dye, N.A. and Popovic, M. and Spannl, S. and Etournay, R. and Kainmueller, D. and Myers, E.W. and Julicher, F. and Eaton, S.
bioRxiv : 140038. 19 May 2017

eLife

A connectome and analysis of the adult Drosophila central brain.
Scheffer, L.K. and Xu, C.S. and Januszewski, M. and Lu, Z. and Takemura, S.Y. and Hayworth, K.J. and Huang, G.B. and Shinomiya, K. and Maitlin-Shepard, J. and Berg, S. and Clements, J. and Hubbard, P.M. and Katz, W.T. and Umayam, L. and Zhao, T. and Ackerman, D. and Blakely, T. and Bogovic, J. and Dolafi, T. and Kainmueller, D. and Kawase, T. and Khairy, K.A. and Leavitt, L. and Li, P.H. and Lindsey, L. and Neubarth, N. and Olbris, D.J. and Otsuna, H. and Trautman, E.T. and Ito, M. and Bates, A.S. and Goldammer, J. and Wolff, T. and Svirskas, R. and Schlegel, P. and Neace, E.R. and Knecht, C.J. and Alvarado, C.X. and Bailey, D.A. and Ballinger, S. and Borycz, J.A. and Canino, B.S. and Cheatham, N. and Cook, M. and Dreher, M. and Duclos, O. and Eubanks, B. and Fairbanks, K. and Finley, S. and Forknall, N. and Francis, A. and Hopkins, G.P. and Joyce, E.M. and Kim, S.J. and Kirk, N.A. and Kovalyak, J. and Lauchie, S.A. and Lohff, A. and Maldonado, C. and Manley, E.A. and McLin, S. and Mooney, C. and Ndama, M. and Ogundeyi, O. and Okeoma, N. and Ordish, C. and Padilla, N. and Patrick, C. and Paterson, T. and Phillips, E.E. and Phillips, E.M. and Rampally, N. and Ribeiro, C. and Robertson, M.K. and Rymer, J.T. and Ryan, S.M. and Sammons, M. and Scott, A.K. and Scott, A.L. and Shinomiya, A. and Smith, C. and Smith, K. and Smith, N.L. and Sobeski, M.A. and Suleiman, A. and Swift, J. and Takemura, S. and Talebi, I. and Tarnogorska, D. and Tenshaw, E. and Tokhi, T. and Walsh, J.J. and Yang, T. and Horne, J.A. and Li, F. and Parekh, R. and Rivlin, P.K. and Jayaraman, V. and Costa, M. and Jefferis, G.S.X.E. and Ito, K. and Saalfeld, S. and George, R. and Meinertzhagen, I.A. and Rubin, G.M. and Hess, H.F. and Jain, V. and Plaza, S.M.
eLife 9 : e57443. 7 September 2020

This list was generated on Sun Sep 26 02:20:36 2021 CEST.
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