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2018

Self-assembly of mutant huntingtin exon-1 fragments into large complex fibrillar structures involves nucleated branching.
Wagner, A.S. and Politi, A.Z. and Ast, A. and Bravo-Rodriguez, K. and Baum, K. and Buntru, A. and Strempel, N.U. and Brusendorf, L. and Hänig, C. and Boeddrich, A. and Plassmann, S. and Klockmeier, K. and Ramirez-Anguita, J.M. and Sanchez-Garcia, E. and Wolf, J. and Wanker, E.E.
Journal of Molecular Biology 430 (12): 1725-1744. 8 June 2018

Pluripotent stem cells for uncovering the role of mitochondria in human brain function and dysfunction.
Zink, A. and Priller, J. and Prigione, A.
Journal of Molecular Biology 430 (7): 891-903. 30 March 2018

2015

DULIP: A dual luminescence-based co-immunoprecipitation assay for interactome mapping in mammalian cells.
Trepte, P. and Buntru, A. and Klockmeier, K. and Willmore, L. and Arumughan, A. and Secker, C. and Zenkner, M. and Brusendorf, L. and Rau, K. and Redel, A. and Wanker, E.E.
Journal of Molecular Biology 427 (21): 3375-3388. 23 October 2015

Chromatin dynamics during differentiation of myeloid cells.
Schönheit, J. and Leutz, A. and Rosenbauer, F.
Journal of Molecular Biology 427 (3): 670-687. 13 February 2015

2013

Plasticity in the contribution of T cell receptor variable region residues to binding of peptide-HLA-A2 complexes.
Smith, S.N. and Sommermeyer, D. and Piepenbrink, K.H. and Blevins, S.J. and Bernhard, H. and Uckert, W. and Baker, B.M. and Kranz, D.M.
Journal of Molecular Biology 425 (22): 4496-4507. 15 November 2013

2012

Peptide linkage to the α-subunit of MHCII creates a stably inverted antigen presentation complex.
Schlundt, A. and Guenther, S. and Sticht, J. and Wieczorek, M. and Roske, Y. and Heinemann, U. and Freund, C.
Journal of Molecular Biology 423 (3): 294-302. 26 October 2012

Structural properties of EGCG-induced, nontoxic Alzheimer's disease Aβ oligomers.
Lopez Del Amo, J.M. and Fink, U. and Dasari, M. and Grelle, G. and Wanker, E.E. and Bieschke, J. and Reif, B.
Journal of Molecular Biology 421 (4-5): 517-524. 24 August 2012

2011

microRNAs and the Operon paper.
Rajewsky, N.
Journal of Molecular Biology 409 (1): 70-75. 27 May 2011

Crystal structures of the bacterial solute receptor AcbH displaying an exclusive substrate preference for beta-D-galactopyranose.
Licht, A. and Bulut, H. and Scheffel, F.M. and Daumke, O. and Wehmeier, U.F. and Saenger, W. and Schneider, E. and Vahedi-Faridi, A.
Journal of Molecular Biology 406 (1): 92-105. 11 February 2011

2009

Altered contractility of skeletal muscle in mice deficient in titin's M-band region.
Ottenheijm, C.A. and Hidalgo, C. and Rost, K. and Gotthardt, M. and Granzier, H.
Journal of Molecular Biology 393 (1): 10-26. 16 October 2009

Dimer formation of a stabilized Gbeta1 variant. A structural and energetic analysis.
Thoms, S. and Max, K.E. and Wunderlich, M. and Jacso, T. and Lilie, H. and Reif, B. and Heinemann, U. and Schmid, F.X.
Journal of Molecular Biology 391 (5): 918-932. 4 September 2009

2008

Alpha-synuclein selectively binds to anionic phospholipids embedded in liquid-disordered domains.
Stoeckl, M. and Fischer, P. and Wanker, E.E. and Herrmann, A.
Journal of Molecular Biology 375 (5): 1394-1404. 1 February 2008

2007

Optimization of the Gbeta1 domain by computational design and by in vitro evolution: structural and energetic basis of stabilization.
Wunderlich, M. and Max, K.E. and Roske, Y. and Mueller, U. and Heinemann, U. and Schmid, F.X.
Journal of Molecular Biology 373 (3): 775-784. 26 October 2007

Optimized Variants of the Cold Shock Protein from in Vitro Selection: Structural Basis of Their High Thermostability.
Max, K.E. and Wunderlich, M. and Roske, Y. and Schmid, F.X. and Heinemann, U.
Journal of Molecular Biology 369 (4): 1087-1097. 15 June 2007

Insight into catalysis of a unique GTPase reaction by a combined biochemical and FTIR approach.
Chakrabarti, P.P. and Daumke, O. and Suveyzdis, Y. and Koetting, C. and Gerwert, K. and Wittinghofer, A.
Journal of Molecular Biology 367 (4): 983-95. 6 April 2007

Promoter crosstalk effects on gene expression.
Hampf, M. and Gossen, M.
Journal of Molecular Biology 365 (4): 911-920. 26 January 2007

2006

Binding site structure of one LRP/RAP complex - implications for a common ligand/receptor binding motif.
Jensen, G.A. and Andersen, O.M. and Bonvin, A.M.J.J. and Bjerrum-Bohr, I. and Etzerodt, M. and Thogersen, H.C. and O'Shea, C. and Poulsen, F.M. and Kragelund, B.B.
Journal of Molecular Biology 362 (4): 700-716. 29 September 2006

Structure of the Bet3-Tpc6B core of TRAPP: two Tpc6 paralogs form trimeric complexes with Bet3 and Mum2.
Kuemmel, D. and Mueller, J.J. and Roske, Y. and Henke, N. and Heinemann, U.
Journal of Molecular Biology 361 (1): 22-32. 4 August 2006

T-rich DNA single strands bind to a preformed site on the bacterial cold shock protein Bs-CspB.
Max, K.E.A. and Zeeb, M. and Bienert, R. and Balbach, J. and Heinemann, U.
Journal of Molecular Biology 360 (3): 702-714. 14 July 2006

I-BasI and I-HmuI: two phage intron-encoded endonucleases with homologous DNA recognition sequences but distinct DNA specificities.
Landthaler, M. and Shen, B.W. and Stoddard, B.L. and Shub, D.A.
Journal of Molecular Biology 358 (4): 1137-1151. 12 May 2006

Solution structure and backbone dynamics of the Trypanosoma cruzi cysteine protease inhibitor chagasin.
Salmon, D. and Aido-Machado, R. and Diehl, A. and Leidert, M. and Schmetzer, O. and de Lima, A.P. and Scharfstein, J. and Oschkinat, H. and Pires, J.R.
Journal of Molecular Biology 357 (5): 1511-1521. 14 April 2006

Structural basis for the substrate specificity of a Bacillus 1,3-1,4-beta-glucanase.
Gaiser, O.J. and Piotukh, K. and Ponnuswamy, W.N. and Planas, A. and Borriss, R. and Heinemann, U.
Journal of Molecular Biology 357 (4): 1211-1225. 7 April 2006

2005

Molecular-scale topographic cues induce the orientation and directional movement of fibroblasts on two-dimensional collagen surfaces.
Poole, K. and Khairy, K. and Friedrichs, J. and Franz, C. and Cisneros, D.A. and Howard, J. and Mueller, D.
Journal of Molecular Biology 349 (2): 380-386. 3 June 2005

Thermodynamic and structural equivalence of two HLA-B27 subtypes complexed with a self-peptide.
Huelsmeyer, M. and Welfle, K. and Poehlmann, T. and Misselwitz, R. and Alexiev, U. and Welfle, H. and Saenger, W. and Uchanska-Ziegler, B. and Ziegler, A.
Journal of Molecular Biology 346 (5): 1367-1379. 1 January 2005

2004

Multivalent scFv display of phagemid repertoires for the selection of carbohydrate-specific antibodies and its application to the Thomsen-Friedenreich antigen.
Ravn, P. and Danielczyk, A. and Jensen, K.B. and Kristensen, P. and Christensen, P.A. and Larsen, M. and Karsten, U. and Goletz, S.
Journal of Molecular Biology 343 (4): 985-996. 29 October 2004

DNA binding and cleavage by the HNH homing endonuclease I-HmuI.
Shen, B.W. and Landthaler, M. and Shub, D.A. and Stoddard, B.L.
Journal of Molecular Biology 342 (1): 43-56. 3 September 2004

High-resolution crystal structures of Caldicellulosiruptor strain Rt8B.4 carbohydrate-binding module CBM27-1 and its complex with mannohexaose.
Roske, Y. and Sunna, A. and Pfeil, W. and Heinemann, U.
Journal of Molecular Biology 340 (3): 543-554. 9 July 2004

Induction and myofibrillar targeting of CARP, and suppression of the Nkx2.5 pathway in the MDM mouse with impaired titin-based signaling.
Witt, C.C. and Ono, Y. and Puschmann, E. and McNabb, M. and Wu, Y. and Gotthardt, M. and Witt, S.H. and Haak, M. and Labeit, D. and Gregorio, C.C. and Sorimachi, H. and Granzier, H. and Labeit, S.
Journal of Molecular Biology 336 : 145-154. 1 January 2004

2003

Muscle-type creatine kinase interacts with central domains of the M-band proteins myomesin and M-protein.
Hornemann, T. and Kempa, S. and Himmel, M. and Hayess, K. and Fuerst, D.O. and Wallimann, T.
Journal of Molecular Biology 332 (4): 877-887. 26 September 2003

Protein feature based identification of cell cycle regulated proteins in yeast.
de Lichtenberg, U. and Jensen, T.S. and Jensen, L.J. and Brunak, S.
Journal of Molecular Biology 329 : 663-674. 13 June 2003

The complete mouse nebulin gene sequence and the identification of cardiac nebulin.
Kazmierski, S.T. and Antin, P.B. and Witt, C.C. and Huebner, N. and McElhinny, A.S. and Labeit, S. and Gregorio, C.C.
Journal of Molecular Biology 328 (4): 835-846. 1 May 2003

Assembly of amyloid protofibrils via critical oligomers - A novel pathway of amyloid formation.
Modler, A.J. and Gast, K. and Lutsch, G. and Damaschun, G.
Journal of Molecular Biology 325 (1): 135-148. 3 January 2003

2002

A novel two-step mechanism for removal of a mitochondrial signal sequence involves the mAAA complex and the putative rhomboid protease Pcp1.
Esser, K. and Tursun, B. and Ingenhoven, M. and Michaelis, G. and Pratje, E.
Journal of Molecular Biology 323 (5): 835-843. 8 November 2002

Common physical properties of DNA affecting target site selection of Sleeping Beauty and other Tc1/mariner transposable elements.
Vigdal, T.J. and Kaufman, C.D. and Izsvak, Z. and Voytas, D.F. and Ivics, Z.
Journal of Molecular Biology 323 (3): 441-452. 25 October 2002

Structure-function analysis of the inverted terminal repeats of the Sleeping Beauty transposon.
Cui, Z. and Geurts, A.M. and Liu, G. and Kaufman, C.D. and Hackett, P.B.
Journal of Molecular Biology 318 (5): 1221-1235. 17 May 2002

Resolution of a disordered region at the entrance of the human sex hormone-binding globulin steroid-binding site.
Grishkovskaya, I. and Avvakumov, G.V. and Hammond, G.L. and Muller, Y.A.
Journal of Molecular Biology 318 (3): 621-626. 3 May 2002

Selection of large diversities of antiidiotypic antibody fragments by phage display.
Goletz, S. and Christensen, P.A. and Kristensen, P. and Blohm, D. and Tomlinson, I. and Winter, G. and Karsten, U.
Journal of Molecular Biology 315 (5): 1087-1097. 1 January 2002

2001

A standard reference frame for the description of nucleic acid base-pair geometry.
Olson, W.K. and Bansal, M. and Burley, S.K. and Dickerson, R.E. and Gerstein, M. and Harvey, S.C. and Heinemann, U. and Lu, X.J. and Neidle, S. and Shakked, Z. and Sklenar, H. and Suzuki, M. and Tung, C.S. and Westhof, E. and Wolberger, C. and Berman, H.M.
Journal of Molecular Biology 313 : 229-237. 12 October 2001

Comparison of ARM and HEAT protein repeats.
Andrade, M.A. and Petosa, C. and O'Donoghue, S.I. and Mueller, C.W. and Bork, P.
Journal of Molecular Biology 309 (1): 1-18. 1 January 2001

Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability.
Delbrueck, H. and Mueller, U. and Perl, D. and Schmid, F.X. and Heinemann, U.
Journal of Molecular Biology 313 (2): 359-369. 1 January 2001

The 1.85 angstrom resolution crystal structures of tissue factor in complex with humanized Fab D3h44 and of free humanized Fab D3h44: Revisiting the solvation of antigen combining sites.
Faelber, K. and Kirchhofer, D. and Presta, L. and Kelley, R.F. and Muller, Y.A.
Journal of Molecular Biology 313 (1): 83-97. 1 January 2001

Cross-reactive binding of cyclic peptides to an anti-TGFalpha antibody fab fragment: an X-ray structural and thermodynamic analysis.
Hahn, M. and Winkler, D. and Welfle, K. and Misselwitz, R. and Welfle, H. and Wessner, H. and Zahn, G. and Scholz, C. and Seifert, M. and Harkins, R. and Schneider-Mergener, J. and Hoehne, W.G.
Journal of Molecular Biology 314 (2): 293-309. 1 January 2001

2000

Homology among (betaalpha)8barrels: implications for the evolution of metabolic pathways.
Copley, R.R. and Bork, P.
Journal of Molecular Biology 303 : 627-641. 3 November 2000

Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus.
Decanniere, K. and Babu, A.M. and Sandman, K. and Reeve, J.N. and Heinemann, U.
Journal of Molecular Biology 303 (1): 35-47. 13 October 2000

Sleeping Beauty, a wide host-range transposon vector for genetic transformation in vertebrates.
Izsvak, Z. and Ivics, Z. and Plasterk, R.H.
Journal of Molecular Biology 302 : 93-102. 8 September 2000

Characterisation of the newly identified human Ump1 homologue POMP and analysis of LMP7(beta 5i) incorporation into 20 S proteasomes.
Witt, E. and Zantopf, D. and Schmidt, M. and Kraft, R. and Kloetzel, P.M. and Krueger, E.
Journal of Molecular Biology 301 (1): 1-9. 4 August 2000

Homology-based method for identification of protein repeats using statistical significance estimates.
Andrade, M.A. and Ponting, C.P. and Gibson, T.J. and Bork, P.
Journal of Molecular Biology 298 (3): 521-537. 5 May 2000

Thermal stability and atomic-resolution crystal structure of the Bacillus caldolyticus cold shock protein.
Mueller, U. and Perl, D. and Schmid, F.X. and Heinemann, U.
Journal of Molecular Biology 297 (4): 975-988. 7 April 2000

Structure and function of the mouse DNA methyltransferase gene: Dnmt1 shows a tripartite structure.
Margot, J.B. and Aguirre-Arteta, A.M. and Di Giacco, B.V. and Pradhan, S. and Roberts, R.J. and Cardoso, M.C. and Leonhardt, H.
Journal of Molecular Biology 297 (2): 293-300. 24 March 2000

1999

Vertebrate-type and plant-type ferredoxins: Crystal structure comparison and electron transfer pathway modelling.
Mueller, J.J. and Mueller, A. and Rottmann, M. and Bernhardt, R. and Heinemann, U.
Journal of Molecular Biology 294 (2): 501-513. 26 November 1999

Prediction of potential GPI-modification sites in proprotein sequences.
Eisenhaber, B. and Bork, P. and Eisenhaber, F.
Journal of Molecular Biology 292 : 741-758. 24 September 1999

Domain organization of Mac-2 binding protein and its oligomerization to linear and ring-like structures.
Mueller, S.A. and Sasaki, T. and Bork, P. and Wolpensinger, B. and Schulthess, T. and Timpl, R. and Engel, A. and Engel, J.
Journal of Molecular Biology 291 : 801-813. 27 August 1999

Proteins can adopt totally different folded conformations.
Damaschun, G. and Damaschun, H. and Gast, K. and Zirwer, D.
Journal of Molecular Biology 291 : 715-725. 20 August 1999

Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer.
Ponting, C.P. and Aravind, L. and Schultz, J. and Bork, P. and Koonin, E.V.
Journal of Molecular Biology 289 : 729-745. 18 June 1999

Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model.
Zacharias, M. and Sklenar, H.
Journal of Molecular Biology 289 : 261-275. 4 June 1999

Sequence information within proteasomal prosequences mediates efficient integration of beta-subunits into the 20 S proteasome complex.
Schmidt, M. and Zantopf, D. and Kraft, R. and Kostka, S. and Preissner, R. and Kloetzel, P.M.
Journal of Molecular Biology 288 : 117-128. 23 April 1999

1998

Predicting function: From genes to genomes and back.
Bork, P. and Dandekar, T. and Diaz-Lazcoz, Y. and Eisenhaber, F. and Huynen, M. and Yuan, Y.P.
Journal of Molecular Biology 283 : 707-725. 6 November 1998

Plasmid pIP501 encoded transcriptional repressor CopR binds to its target DNA as a dimer.
Steinmetzer, K. and Behlke, J. and Brantl, S.
Journal of Molecular Biology 283 : 595-603. 30 October 1998

Merging extracellular domains: Fold prediction for laminin G- like and amino-terminal thrombospondin-like modules based on homology to pentraxins.
Beckmann, G. and Hanke, J. and Bork, P. and Reich, J.
Journal of Molecular Biology 275 : 725-730. 1 January 1998

Homology-based fold predictions for Mycoplasma genitalium proteins.
Huynen, M. and Doerks, T. and Eisenhaber, F. and Orengo, C. and Sunyaev, S.R. and Yuan, Y.P. and Bork, P.
Journal of Molecular Biology 280 : 323-326. 1 January 1998

1997

Assessing the reliability of RNA folding using statistical mechanics.
Huynen, M.A. and Guttel, R. and Konings, D.A.M.
Journal of Molecular Biology 267 : 1104-1112. 1 January 1997

Ferredoxin from the hyperthermophile thermotoga maritima is stable beyond the boiling point of water.
Pfeil, W. and Gesierich, U. and Kleemann, G.R. and Sterner, R.
Journal of Molecular Biology 272 : 591-596. 1 January 1997

1996

Genomic organization of M line titin and its tissue-specific expression in two distinct isoforms.
Kolmerer, B. and Olivieri, N. and Witt, C.C. and Labeit, S.
Journal of Molecular Biology 256 : 556-563. 1 January 1996

1995

Homodimers of chromosomal proteins HMG-14 and HMG-17 in nucleosome cores.
Postnikov, Y. and Trieschmann, L. and Rieckers, A. and Bustin, M.
Journal of Molecular Biology 252 : 423-432. 1 January 1995

Crystal structure of an RNA dodecamer containing the Escherichia Coli Shine-Dalgarno sequence.
Schindelin, H. and Zhang, M. and Bald, R. and Fuerste, J.P. and Erdmann, V.A. and Heinemann, U.
Journal of Molecular Biology 249 (3): 595-603. 1 January 1995

1994

Amino acid requirements of the nucleocapsid protein of HIV-1 for increasing catalytic activity of a Ki-ras ribozyme in vitro.
Mueller, G. and Strack, B. and Dannull, J. and Sproat, B.S. and Surovoy, A. and Jung, G. and Moelling, K.
Journal of Molecular Biology 242 (4): 422-429. 30 September 1994

Drosophila kelch motif is derived from a common enzyme fold.
Bork, P. and Doolittle, R.F.
Journal of Molecular Biology 236 : 1277-1282. 1 January 1994

The immunoglobulin fold - Structural classification, sequence patterns and common core.
Bork, P. and Holm, L. and Sander, C.
Journal of Molecular Biology 242 : 309-320. 1 January 1994

1993

Secondary structure and temperature-induced unfolding and refolding of ribonuclease T1 in aqueous solution: a Fourier transform infrared spectroscopic study.
Fabian, H. and Schultz, C. and Naumann, D. and Landt, O. and Hahn, U. and Saenger, W.
Journal of Molecular Biology 232 (3): 967-981. 5 August 1993

A method to configure protein side-chains from the main-chain trace in homology modelling.
Eisenmenger, F. and Argos, P. and Abagyan, R.
Journal of Molecular Biology 231 (3): 849-860. 5 June 1993

Localization of proteins HL29 and HL31 from Haloarcula- marismortui within the 50-S ribosomal subunit by chemical crosslinking.
Bergmann, U. and Wittmann-Liebold, B.
Journal of Molecular Biology 232 : 693-700. 1 January 1993

The CUB domain: A widespread module in developmentally regulated proteins.
Bork, P. and Beckmann, G.
Journal of Molecular Biology 231 : 539-545. 1 January 1993

Crystallization of barley (1-3,1-4)-beta-glucanase, isoenzyme II.
Keitel, T. and Thomsen, K.K. and Heinemann, U.
Journal of Molecular Biology 232 : 1003-1004. 1 January 1993

Prokaryotic members of a new family of putative helicases with similarity to transcripton activator SNF2.
Kolsto, A.B. and Bork, P. and Kvaloy, K. and Lindback, T. and Gronstadt, A. and Kristensen, T. and Sander, C.
Journal of Molecular Biology 230 : 684-688. 1 January 1993

Crystallization of bovine adrenodoxin-reductase in a new unit cell and its crystallographic characterization.
Kuban, R.J. and Marg, A. and Resch, M. and Ruckpaul, K.
Journal of Molecular Biology 234 : 245-248. 1 January 1993

Rotamers - to be or not to be? - An analysis of amino acid side-chains conformations in globular proteins.
Schrauber, H. and Eisenhaber, F. and Argos, P.
Journal of Molecular Biology 230 : 592-612. 1 January 1993

1992

Crystallization and x-ray examination of bovine adrenodoxin.
Marg, A. and Kuban, R.J. and Behlke, J. and Dettmer, R. and Ruckpaul, K.
Journal of Molecular Biology 227 : 945-947. 1 January 1992

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