Dataset

Single-cell RNA-seq data for murine LSK, LK and total bone marrow cells.
Stäble, S., Schönung, M., Hartmann, M., Hakobyan, M., Krämer, S., Mücke, O., Haas, S. ORCID: https://orcid.org/0000-0001-9227-2051, Mallm, J., Rippe, K., Schlesner, M., Milsom, M.D., Plass, C., Lipka, D.B. and
[Dataset] 9 May 2026

Transcriptomic profiling reveals substrate- and shear stress_x0002_dependent maturation of human small intestinal epithelial cells.
Alzain, N., Almalla, A., Sandu, K., Gerbeth, L., Ziegler, J., Gutwein, C., Weidner, P. ORCID: https://orcid.org/0000-0003-2448-5981, Glauben, R., Weinhart, M. and Siegmund, B.
[Dataset] 22 April 2026

Single-cell mitochondrial genotyping of exonuclease-deficient DNA polymerase γ (POLGD274A) knock-in HEK293 cell lines.
Hsieh, Y.H. ORCID: https://orcid.org/0000-0003-3037-8728, Liebold, J. and Ludwig, L.S. ORCID: https://orcid.org/0000-0002-2916-2164
[Dataset] 10 April 2026

In vivo RNA metabolic labeling identifies the sentinel cells of the regenerating zebrafish heart [bulk_slamseq].
Mintcheva, J. ORCID: https://orcid.org/0000-0003-0793-6277, Tseng, T., Goumenaki, P., Neuschulz, A. ORCID: https://orcid.org/0000-0001-6163-3344, Senoussi, A. ORCID: https://orcid.org/0000-0002-7066-8917, Schäfer, R., Lelek, S., Panakova, D. ORCID: https://orcid.org/0000-0002-8739-6225, Stainier, D. and Junker, J. ORCID: https://orcid.org/0000-0002-2826-8290
[Dataset] 30 March 2026

In vivo RNA metabolic labeling identifies the sentinel cells of the regenerating zebrafish heart [scrna-seq].
Mintcheva, J. ORCID: https://orcid.org/0000-0003-0793-6277, Tseng, T., Goumenaki, P., Neuschulz, A. ORCID: https://orcid.org/0000-0001-6163-3344, Senoussi, A. ORCID: https://orcid.org/0000-0002-7066-8917, Schäfer, R., Lelek, S., Panakova, D. ORCID: https://orcid.org/0000-0002-8739-6225, Stainier, D. and Junker, J. ORCID: https://orcid.org/0000-0002-2826-8290
[Dataset] 30 March 2026

In vivo RNA metabolic labeling identifies the sentinel cells of the regenerating zebrafish heart [scslam-seq].
Mintcheva, J. ORCID: https://orcid.org/0000-0003-0793-6277, Tseng, T., Goumenaki, P., Neuschulz, A. ORCID: https://orcid.org/0000-0001-6163-3344, Senoussi, A. ORCID: https://orcid.org/0000-0002-7066-8917, Schäfer, R., Lelek, S., Panakova, D. ORCID: https://orcid.org/0000-0002-8739-6225, Stainier, D. and Junker, J. ORCID: https://orcid.org/0000-0002-2826-8290
[Dataset] 30 March 2026

Analysis of retroviral MLT1 enhancer-driven genes identifies over-expression of EPS8L1 as an early-stage initiator of both oxidative stress and poor trophoblast invasiveness in the pregnancy disorder preeclampsia.
Hurst, L., Izsvak, Z. ORCID: https://orcid.org/0000-0002-2053-2384, Anwar, R. and Pande, A. ORCID: https://orcid.org/0009-0008-0826-973X
[Dataset] 2 March 2026

Non-viral in situ gene editing effectively and safely rescues congenital ichthyosis-causing mutations in human skin.
Apaydin, Dilem, Sadhnani, Gaurav ORCID: https://orcid.org/0009-0000-9803-410X, Obermayer, Benedikt ORCID: https://orcid.org/0000-0002-9116-630X and Hedtrich, Sarah ORCID: https://orcid.org/0000-0001-6770-3657
[Dataset] 26 January 2026

Genetic alterations of SENP6 disrupt DNA repair and proteostasis conferring sensitivity to proteasome inhibition in multiple myeloma.
Herzberg, F., Korenkov, M. ORCID: https://orcid.org/0000-0002-2988-8483, Isaakidis, K., Zang, C., Wirth, M. ORCID: https://orcid.org/0000-0002-8340-0872, Müller, S., Keller, U. ORCID: https://orcid.org/0000-0002-8485-1958 and Demel, U.M. ORCID: https://orcid.org/0000-0002-6480-4185
[Dataset] 8 December 2025

Clonally expanded effector CD4+ cytotoxic T lymphocytes are associated with severe neurological adverse events after immune checkpoint inhibitor therapy.
Maschmeyer, P. ORCID: https://orcid.org/0000-0002-1705-5302, Giguelay, A.M. ORCID: https://orcid.org/0000-0003-0417-1109 and Ludwig, L.S. ORCID: https://orcid.org/0000-0002-2916-2164
[Dataset] 3 December 2025

Gene expression of daughter CD8+ T cells that inherited or not pre-mitotic mitochondria.
Borsa, M. ORCID: https://orcid.org/0000-0003-1519-2597, Kayvanjoo, A.H. ORCID: https://orcid.org/0000-0003-1315-8336 and Simon, A.K. ORCID: https://orcid.org/0000-0002-4077-7995
[Dataset] 1 December 2025

The deubiquitinase OTUD7B ameliorates central nervous system autoimmunity by inhibiting degradation of glial fibrillary acidic protein and astrocyte hyperinflammation.
Harit, K., Yi, W., Jeron, A., Schmidt, J., Beckervordersandfort-Bonk, R., Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Plumbon, I., Manukyan, A. ORCID: https://orcid.org/0000-0002-0441-9517, Deckert, M., Conrad, T. ORCID: https://orcid.org/0000-0001-5618-6295, Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734, Radbruch, H. ORCID: https://orcid.org/0000-0001-6941-3397, Wang, X., Nishanth, G. and Schlüter, D.
[Dataset] 1 December 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming [bulkPolyA_RNA_seq_LA_ES].
Cordero, J., Wang, Y. and Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 21 November 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming [04scRNA_seq_D10].
Ren, Y., Wang, Y., Cordero Henriquez, J.D. and Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 21 November 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming [ES_RNA_seq_G609G_LA_EXP1].
Wang, Y., Shi, H., Cordero, J. and Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 21 November 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming [ES_RNA_seq_G609G_LA_EXP2].
Wang, Y., Shi, H., Cordero, J. and Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 21 November 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming [ES_ChIP_seq_H3K9ac_H3K27ac_LA].
Cordero, J., Wang, Y. and Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 20 November 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming [ES_ChIP_seq_H3K9me3_LA].
Cordero, J., Wang, Y. and Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 20 November 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming [ES_H3K9ac_ChIP-seq].
Cordero, J., Wang, Y. and Dobreva, G. ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 20 November 2025

Differentiation and Dexamethasone Atrophy on C2C12 myotubes.
Nakagawa, S. ORCID: https://orcid.org/0000-0002-9417-9499, Misios, A. and Harnett, D. ORCID: https://orcid.org/0000-0002-9190-128X
[Dataset] 29 September 2025

Identification of a spinal circuit for skilled locomotion.
Toscano, E. ORCID: https://orcid.org/0009-0006-1599-1670, Misios, A., Lowenstein, E.D. ORCID: https://orcid.org/0000-0003-3755-0818, Birchmeier, C. ORCID: https://orcid.org/0000-0002-2041-8872 and Zampieri, N. ORCID: https://orcid.org/0000-0002-2228-9453
[Dataset] 31 August 2025

Lamin A/C-regulated cysteine catabolic flux modulates stem cell fate through epigenome reprogramming.
Dobreva, Gergana ORCID: https://orcid.org/0000-0002-4814-9416
[Dataset] 29 January 2025

Temperature dependent sex determination in the turtle Trachemys scripta.
Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Tezak, B., Chung, W.Y., Webber, C., Mota, I., Hurtado, A. ORCID: https://orcid.org/0000-0001-6267-704X, Capel, B. and Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
[Dataset] 30 December 2024

Mutant Huntingtin impairs neurodevelopment in human brain organoids through CHCHD2-mediated neurometabolic failure.
Lisowski, Pawel ORCID: https://orcid.org/0000-0002-3634-1072
[Dataset] 27 September 2024

Preeclampsia sample 6.
Pandey, Amit ORCID: https://orcid.org/0000-0002-8886-1694
[Dataset] 8 April 2024

RIF1 acts as a gatekeeper of B cell identity during late differentiation.
Di Virgilio, Michela ORCID: https://orcid.org/0000-0001-5189-0793
[Dataset] 8 February 2024

Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis.
Mota-Gómez, I. ORCID: https://orcid.org/0000-0001-8308-8017, Rodriguez, J.A., Dupont, S., Hurtado, A. ORCID: https://orcid.org/0000-0001-6267-704X, Cadenas, V., Lao, O., Jedamzick, J., Kuhn, R. ORCID: https://orcid.org/0000-0003-1694-9803, Lacadie, S. ORCID: https://orcid.org/0000-0002-0893-5340, Garcia-Moreno, S.A., Torres, M., Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260, Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Capel, B., Marti-Renom, M.A. and Lupiañez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
[Dataset] 21 November 2022

Cellular drivers of injury response and regeneration in the adult zebrafish heart.
Hu, B. ORCID: https://orcid.org/0000-0003-0751-885X, Lelek, S., Spanjaard, B. ORCID: https://orcid.org/0000-0003-1309-8839, Simões, M.G. ORCID: https://orcid.org/0000-0002-7340-9128, Aliee, H., Schäfer, R., Theis, F., Panáková, D. ORCID: https://orcid.org/0000-0002-8739-6225 and Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290
[Dataset] 16 August 2022

Morphine alleviates pain after heart cryonjury in zebrafish without impeding regeneration.
Lelek, S., Guedes Simões, M., Hu, B. ORCID: https://orcid.org/0000-0003-0751-885X, Alameldeen, A.M., Czajkowski, M.T. ORCID: https://orcid.org/0000-0002-0122-1943, Meyer, A.M. ORCID: https://orcid.org/0000-0002-4665-2077, Ferrara, F., Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290 and Pánákova, D. ORCID: https://orcid.org/0000-0002-8739-6225
[Dataset] 16 August 2022

Herpesviral induction of germline transcription factor DUX4 is critical for viral gene expression.
Walter, S., Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Drayman, N., Tay, S., Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117, Ensser, A. and Full, F.
[Dataset] 21 May 2021

Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndrome.
Glazar, Peter ORCID: https://orcid.org/0000-0003-0842-0088
[Dataset] 20 April 2021

iPSC-derived 2D and 3D models of mitochondrial disease reveal early defects in neuronal morphogenesis and identify intervention strategies.
Inak, G., Rybak, A. ORCID: https://orcid.org/0000-0002-1192-5290, Lisowski, P. ORCID: https://orcid.org/0000-0002-3634-1072, Pentimalli, T.M. ORCID: https://orcid.org/0000-0002-8461-7918, Karaiskos, N. ORCID: https://orcid.org/0000-0001-7771-3947, Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332, Schuelke, M. ORCID: https://orcid.org/0000-0003-2824-3891 and Prigione, A. ORCID: https://orcid.org/0000-0001-9457-1952
[Dataset] 20 April 2021