Article

K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors.
Waltho, A. ORCID: https://orcid.org/0009-0000-0059-9357, Popp, O. ORCID: https://orcid.org/0000-0001-6240-4666, Lenz, C. ORCID: https://orcid.org/0009-0000-2261-2823, Pluska, L. ORCID: https://orcid.org/0000-0002-8669-6533, Lambert, M., Dötsch, V. ORCID: https://orcid.org/0000-0001-5720-212X, Mertins, P. ORCID: https://orcid.org/0000-0002-2245-528X and Sommer, T. ORCID: https://orcid.org/0000-0001-9990-5202
Life Science Alliance 7 (8): e202402740. August 2024

IFT88 maintains sensory function by localising signalling proteins along Drosophila cilia.
Werner, S. ORCID: https://orcid.org/0000-0001-8350-2417, Okenve-Ramos, P. ORCID: https://orcid.org/0000-0002-7513-6557, Hehlert, P. ORCID: https://orcid.org/0000-0003-3794-3267, Zitouni, S. ORCID: https://orcid.org/0000-0003-3590-3931, Priya, P., Mendonça, S., Sporbert, A. ORCID: https://orcid.org/0000-0002-3738-1295, Spalthoff, C., Göpfert, M.C. ORCID: https://orcid.org/0000-0001-8201-5334, Jana, S.C. ORCID: https://orcid.org/0000-0002-8311-3849 and Bettencourt-Dias, M. ORCID: https://orcid.org/0000-0003-1987-5598
Life Science Alliance 7 (5): e202302289. May 2024

ADAM19 cleaves the PTH receptor and associates with brachydactyly type E.
Aydin, A. ORCID: https://orcid.org/0000-0002-2890-0225, Klenk, C. ORCID: https://orcid.org/0000-0001-5199-7144, Nemec, K. ORCID: https://orcid.org/0000-0002-3555-5853, Işbilir, Ali ORCID: https://orcid.org/0000-0002-9629-1150, Martin, L.M. ORCID: https://orcid.org/0009-0006-7241-9435, Zauber, H. ORCID: https://orcid.org/0000-0003-2595-1147, Rrustemi, T. ORCID: https://orcid.org/0000-0002-9075-103X, Toka, H.R. ORCID: https://orcid.org/0000-0002-9973-4404, Schuster, H., Gong, M. ORCID: https://orcid.org/0000-0001-7384-3429, Stricker, S. ORCID: https://orcid.org/0000-0002-7174-5363, Bock, A. ORCID: https://orcid.org/0000-0002-6344-6494, Bähring, S. ORCID: https://orcid.org/0000-0001-8734-9755, Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751, Lohse, M.J. ORCID: https://orcid.org/0000-0002-0599-3510 and Luft, F.C. ORCID: https://orcid.org/0000-0002-8635-1199
Life Science Alliance 7 (4): e202302400. April 2024

Single-cell time series analysis reveals the dynamics of HSPC response to inflammation.
Bouman, B.J. ORCID: https://orcid.org/0000-0003-1259-5040, Demerdash, Y., Sood, S., Grünschläger, F., Pilz, F., Itani, A.R. ORCID: https://orcid.org/0000-0001-7608-822X, Kuck, A., Marot-Lassauzaie, V. ORCID: https://orcid.org/0000-0002-8362-9634, Haas, S. ORCID: https://orcid.org/0000-0001-9227-2051, Haghverdi, L. ORCID: https://orcid.org/0000-0001-9280-9170 and Essers, M.A. ORCID: https://orcid.org/0000-0003-3117-1809
Life Science Alliance 7 (3): e202302309. March 2024

Branch point strength controls species-specific CAMK2B alternative splicing and regulates LTP.
Franz, A. ORCID: https://orcid.org/0000-0003-0562-6451, Weber, A.I. ORCID: https://orcid.org/0000-0001-5103-6060, Preußner, M. ORCID: https://orcid.org/0000-0001-5155-0844, Dimos, N. ORCID: https://orcid.org/0000-0001-5398-7310, Stumpf, A. ORCID: https://orcid.org/0000-0002-1510-6970, Ji, Y., Moreno-Velasquez, L. ORCID: https://orcid.org/0000-0001-9735-0039, Voigt, A., Schulz, F. ORCID: https://orcid.org/0000-0002-7756-0562, Neumann, A., Kuropka, B. ORCID: https://orcid.org/0000-0001-5088-6346, Kuehn, R. ORCID: https://orcid.org/0000-0003-1694-9803, Urlaub, H., Schmitz, D. ORCID: https://orcid.org/0000-0003-2741-5241, Wahl, M.C. ORCID: https://orcid.org/0000-0002-2811-5307 and Heyd, F. ORCID: https://orcid.org/0000-0001-9377-9882
Life Science Alliance 6 (3): e202201826. March 2023

Disease- and sex-specific differences in patients with heart valve disease: a proteome study.
Nordmeyer, S. ORCID: https://orcid.org/0000-0002-1111-2521, Kraus, M. ORCID: https://orcid.org/0000-0002-4472-0427, Ziehm, M. ORCID: https://orcid.org/0000-0001-7074-4054, Kirchner, M. ORCID: https://orcid.org/0000-0002-7049-534X, Schafstedde, M. ORCID: https://orcid.org/0000-0002-4860-8010, Kelm, M., Niquet, S., Stephen, M.M., Baczko, I. ORCID: https://orcid.org/0000-0002-9588-0797, Knosalla, C. ORCID: https://orcid.org/0000-0002-8127-5019, Schapranow, M.P. ORCID: https://orcid.org/0000-0001-6601-2942, Dittmar, G. ORCID: https://orcid.org/0000-0003-3647-8623, Gotthardt, M. ORCID: https://orcid.org/0000-0003-1788-3172, Falcke, M. ORCID: https://orcid.org/0000-0001-7137-1114, Regitz-Zagrosek, V., Kuehne, T. and Mertins, P. ORCID: https://orcid.org/0000-0002-2245-528X
Life Science Alliance 6 (3): e202201411. March 2023

Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension.
Dahale, S., Ruiz-Orera, J. ORCID: https://orcid.org/0000-0002-8317-0034, Silhavy, J., Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223, van Heesch, S. ORCID: https://orcid.org/0000-0001-9593-1980, Pravenec, M. ORCID: https://orcid.org/0000-0001-9197-5871 and Atanur, S.S. ORCID: https://orcid.org/0000-0002-3669-9787
Life Science Alliance 5 (4): e202101234. April 2022

Epigenetic modifier balances Mapk and Wnt signalling in differentiation of goblet and Paneth cells.
Grinat, J. ORCID: https://orcid.org/0000-0003-0152-4941, Kosel, F., Goveas, N. ORCID: https://orcid.org/0000-0002-2531-5514, Kranz, A. ORCID: https://orcid.org/0000-0002-7481-0220, Alexopoulou, D. ORCID: https://orcid.org/0000-0002-3715-1756, Rajewsky, K. ORCID: https://orcid.org/0000-0002-6633-6370, Sigal, M. ORCID: https://orcid.org/0000-0003-4772-0761, Stewart, A.F. and Heuberger, J. ORCID: https://orcid.org/0000-0001-7205-732X
Life Science Alliance 5 (4): e202101187. April 2022

Mammalian splicing divergence is shaped by drift, buffering in trans, and a scaling law.
Zou, X. ORCID: https://orcid.org/0000-0002-2958-0438, Schaefke, B. ORCID: https://orcid.org/0000-0003-1119-7198, Li, Y., Jia, F., Sun, W., Li, G., Liang, W., Reif, T., Heyd, F., Gao, Q. ORCID: https://orcid.org/0000-0002-9930-8499, Tian, S., Li, Y., Tang, Y., Fang, L. ORCID: https://orcid.org/0000-0003-4502-1756, Hu, Y. ORCID: https://orcid.org/0000-0002-5210-5301 and Chen, W. ORCID: https://orcid.org/0000-0003-3263-1627
Life Science Alliance 5 (4): e202101333. April 2022

Negative correlation of single-cell PAX3:FOXO1 expression with tumorigenicity in rhabdomyosarcoma.
Regina, C., Hamed, E. ORCID: https://orcid.org/0000-0002-3595-677X, Andrieux, G., Angenendt, S. ORCID: https://orcid.org/0000-0003-0827-7613, Schneider, M., Ku, M. ORCID: https://orcid.org/0000-0001-5168-4308, Follo, M. ORCID: https://orcid.org/0000-0002-3090-7442, Wachtel, M., Ke, E., Kikuchi, K. ORCID: https://orcid.org/0000-0003-3097-7480, Henssen, A.G. ORCID: https://orcid.org/0000-0003-1534-778X, Schäfer, B.W., Boerries, M. ORCID: https://orcid.org/0000-0002-3670-0602, Wagers, A.J. ORCID: https://orcid.org/0000-0002-0066-0485, Keller, C. ORCID: https://orcid.org/0000-0003-2505-7487 and Hettmer, S. ORCID: https://orcid.org/0000-0003-1709-4448
Life Science Alliance 4 (9): e202001002. September 2021

Myeloid transformation by MLL-ENL depends strictly on C/EBP.
Wesolowski, R. ORCID: https://orcid.org/0009-0002-7228-1051, Kowenz-Leutz, E., Zimmermann, K., Dörr, D. ORCID: https://orcid.org/0000-0001-8575-7560, Hofstätter, M. ORCID: https://orcid.org/0000-0002-6198-2859, Slany, R.K., Mildner, A. ORCID: https://orcid.org/0000-0002-2019-8427 and Leutz, A. ORCID: https://orcid.org/0000-0001-8259-927X
Life Science Alliance 4 (1): e202000709. January 2021

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.
Tanevski, J. ORCID: https://orcid.org/0000-0001-7177-1003, Nguyen, T., Truong, B., Karaiskos, N. ORCID: https://orcid.org/0000-0001-7771-3947, Ahsen, M.E., Zhang, X., Shu, C. ORCID: https://orcid.org/0000-0002-3730-5102, Xu, K. ORCID: https://orcid.org/0000-0002-6472-7052, Liang, X., Hu, Y. ORCID: https://orcid.org/0000-0002-0794-742X, Pham, H.V.V. ORCID: https://orcid.org/0000-0002-8884-3584, Xiaomei, L., Le, T.D. ORCID: https://orcid.org/0000-0002-9732-4313, Tarca, A.L. ORCID: https://orcid.org/0000-0003-1712-7588, Bhatti, G., Romero, R., Karathanasis, N. ORCID: https://orcid.org/0000-0003-4119-0851, Loher, P., Chen, Y. ORCID: https://orcid.org/0000-0003-0147-3443, Ouyang, Z. ORCID: https://orcid.org/0000-0003-2842-8503, Mao, D., Zhang, Y. ORCID: https://orcid.org/0000-0001-8986-0354, Zand, M., Ruan, J., Hafemeister, C., Qiu, P., Tran, D. ORCID: https://orcid.org/0000-0003-2918-8601, Nguyen, T. ORCID: https://orcid.org/0000-0001-8001-9470, Gabor, A. ORCID: https://orcid.org/0000-0002-0776-1182, Yu, T., Guinney, J., Glaab, E. ORCID: https://orcid.org/0000-0003-3977-7469, Krause, R. ORCID: https://orcid.org/0000-0001-9938-7126, Banda, P. ORCID: https://orcid.org/0000-0001-6678-490X, Stolovitzky, G. ORCID: https://orcid.org/0000-0002-9618-2819, Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332, Saez-Rodriguez, J. and Meyer, P. ORCID: https://orcid.org/0000-0001-5281-4661
Life Science Alliance 3 (11): e202000867. November 2020

Immunoglobulin expression in the endoplasmic reticulum shapes the metabolic fitness of B lymphocytes.
Jumaa, H., Caganova, M. ORCID: https://orcid.org/0000-0002-4576-6574, McAllister, E.J., Hoenig, L., He, X., Saltukoglu, D. ORCID: https://orcid.org/0000-0003-0959-0812, Brenker, K., Köhler, M., Leben, R., Hauser, A.E., Niesner, R. ORCID: https://orcid.org/0000-0001-8969-5432, Rajewsky, K. ORCID: https://orcid.org/0000-0002-6633-6370, Reth, M. and Jellusova, J. ORCID: https://orcid.org/0000-0002-5234-2104
Life Science Alliance 3 (6): e202000700. June 2020

Evaluation of colorectal cancer subtypes and cell lines using deep learning.
Ronen, J. ORCID: https://orcid.org/0000-0003-3980-6469, Hayat, S. and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
Life Science Alliance 2 (6): 201900517. December 2019

m(6)A-mRNA methylation regulates cardiac gene expression and cellular growth.
Kmietczyk, V. ORCID: https://orcid.org/0000-0002-4728-4077, Riechert, E. ORCID: https://orcid.org/0000-0003-4876-7860, Kalinski, L., Boileau, E. ORCID: https://orcid.org/0000-0001-9355-0973, Malovrh, E. ORCID: https://orcid.org/0000-0003-0911-6125, Malone, B., Gorska, A., Hofmann, C. ORCID: https://orcid.org/0000-0002-3389-6582, Varma, E., Jürgensen, L., Kamuf-Schenk, V., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Tappu, R., Busch, M. ORCID: https://orcid.org/0000-0002-2717-7063, Most, P., Katus, H.A., Dieterich, C. and Völkers, M. ORCID: https://orcid.org/0000-0003-2344-1856
Life Science Alliance 2 (2): e201800233. April 2019

A C/EBPα-Wnt connection in gut homeostasis and carcinogenesis.
Heuberger, J. ORCID: https://orcid.org/0000-0001-7205-732X, Hill, U., Förster, S., Zimmermann, K., Malchin, V., Kühl, A.A., Stein, U. ORCID: https://orcid.org/0000-0001-7006-282X, Vieth, M., Birchmeier, W. ORCID: https://orcid.org/0000-0003-1173-0829 and Leutz, A. ORCID: https://orcid.org/0000-0001-8259-927X
Life Science Alliance 2 (1): e201800173. February 2019

Interaction modulation through arrays of clustered methyl-arginine protein modifications.
Woodsmith, J. ORCID: https://orcid.org/0000-0002-0790-3726, Casado-Medrano, V., Benlasfer, N., Eccles, R.L. ORCID: https://orcid.org/0000-0002-8209-5650, Hutten, S., Heine, C.L., Thormann, V., Abou-Ajram, C., Rocks, O. ORCID: https://orcid.org/0000-0001-6349-9193, Dormann, D. ORCID: https://orcid.org/0000-0002-9260-2775 and Stelzl, U. ORCID: https://orcid.org/0000-0003-2500-3585
Life Science Alliance 1 (5): e201800178. October 2018

Pervasive allele-specific regulation on RNA decay in hybrid mice.
Sun, W. ORCID: https://orcid.org/0000-0001-9607-1361, Gao, Q. ORCID: https://orcid.org/0000-0002-9930-8499, Schaefke, B., Hu, Y. and Chen, W. ORCID: https://orcid.org/0000-0003-3263-1627
Life Science Alliance 1 (2): e201800052. May 2018