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Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data.
Miko, H. and Qiu, Y. and Gaertner, B. and Sander, M. and Ohler, U.
BMC Genomics 22 (1): 84. 28 January 2021


The effects of common structural variants on 3D chromatin structure.
Shanta, O. and Noor, A. and Sebat, J.
BMC Genomics 21 (1): 95. 30 January 2020


GOPHER: Generator Of Probes for capture Hi-C Experiments at high Resolution.
Hansen, P. and Ali, S. and Blau, H. and Danis, D. and Hecht, J. and Kornak, U. and Lupiáñez, D.G. and Mundlos, S. and Steinhaus, R. and Robinson, P.N.
BMC Genomics 20 (1): 40. 14 January 2019


First genome-wide CNV mapping in FELIS CATUS using next generation sequencing data.
Genova, F. and Longeri, M. and Lyons, L.A. and Bagnato, A. and Strillacci, M.G.
BMC Genomics 19 (1): 895. 10 December 2018

Finding RNA structure in the unstructured RBPome.
Orenstein, Y. and Ohler, U. and Berger, B.
BMC Genomics 19 (1): 154. 20 February 2018


Forward genetic screen of human transposase genomic rearrangements.
Henssen, A.G. and Jiang, E. and Zhuang, J. and Pinello, L. and Socci, N.D. and Koche, R. and Gonen, M. and Villasante, C.M. and Armstrong, S.A. and Bauer, D.E. and Weng, Z. and Kentsis, A.
BMC Genomics 17 : 548. 4 August 2016


Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae).
Lamanna, F. and Kirschbaum, F. and Waurick, I. and Dieterich, C. and Tiedemann, R.
BMC Genomics 16 (1): 668. 3 September 2015

Genomic landscape of rat strain and substrain variation.
Hermsen, R. and de Ligt, J. and Spee, W. and Blokzijl, F. and Schäfer, S. and Adami, E. and Boymans, S. and Flink, S and van Boxtel, R. and van der Weide, R.H. and Aitman, T. and Hübner, N. and Simonis, M. and Tabakoff, B. and Guryev, V. and Cuppen, E.
BMC Genomics 16 : 357. 6 May 2015

Induced pluripotent stem cell-derived neuronal cells from a sporadic Alzheimer's disease donor as a model for investigating AD-associated gene regulatory networks.
Hossini, A.M. and Megges, M. and Prigione, A. and Lichtner, B. and Toliat, M.R. and Wruck, W. and Schroeter, F. and Nuernberg, P. and Kroll, H. and Makrantonaki, E. and Zoubouliss, C.C. and Adjaye, J.
BMC Genomics 16 (1): 84. 14 February 2015


Whole genome sequencing and methylome analysis of the wild guinea pig.
Weyrich, A. and Schuellermann, T. and Heeger, F. and Jeschek, M. and Mazzoni, C.J. and Chen, W. and Schumann, K. and Fickel, J.
BMC Genomics 15 (1): 1036. 28 November 2014

Relationship between genome and epigenome - challenges and requirements for future research.
Almouzni, G. and Altucci, L. and Amati, B. and Ashley, N. and Baulcombe, D. and Beaujean, N. and Bock, C. and Bongcam-Rudloff, E. and Bousquet, J. and Braun, S. and Bressac-de Paillerets, B. and Bussemakers, M. and Clarke, L. and Conesa, A. and Estivill, X. and Fazeli, A. and Grgurević, N. and Gut, I. and Heijmans, B.T. and Hermouet, S. and Houwing-Duistermaat, J. and Iacobucci, I. and Ilaš, J. and Kandimalla, R. and Krauss-Etschmann, S. and Lasko, P. and Lehmann, S. and Lindroth, A. and Majdič, G. and Marcotte, E. and Martinelli, G. and Martinet, N. and Meyer, E. and Miceli, C. and Mills, K. and Moreno-Villanueva, M. and Morvan, G. and Nickel, D. and Niesler, B. and Nowacki, M. and Nowak, J. and Ossowski, S. and Pelizzola, M. and Pochet, R. and Potočnik, U. and Radwanska, M. and Raes, J. and Rattray, M. and Robinson, M.D. and Roelen, B. and Sauer, S. and Schinzer, D. and Slagboom, E. and Spector, T. and Stunnenberg, H.G. and Tiligada, E. and Torres-Padilla, M.E. and Tsonaka, R. and Van Soom, A. and Vidaković, M. and Widschwendter, M.
BMC Genomics 15 : 487. 18 June 2014


Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy.
Ni, T. and Yang, Y. and Hafez, D. and Yang, W. and Kiesewetter, K. and Wakabayashi, Y. and Ohler, U. and Peng, W. and Zhu, J.
BMC Genomics 14 (1): 615. 11 September 2013

A systematic evaluation of hybridization-based mouse exome capture system.
Gao, Q. and Sun, W. and You, X. and Froehler, S. and Chen, W.
BMC Genomics 14 (1): 492. 21 July 2013

Transcriptome based identification of mouse cumulus cell markers that predict the developmental competence of their enclosed antral oocytes.
Vigone, G. and Merico, V. and Prigione, A. and Mulas, F. and Sacchi, L. and Gabetta, M. and Bellazzi, R. and Redi, C.A. and Mazzini, G. and Adjaye, J. and Garagna, S. and Zuccotti, M.
BMC Genomics 14 : 380. 7 June 2013


Divergent gene expression in the conserved dauer stage of the nematodes Pristionchus pacificus and Caenorhabditis elegans.
Sinha, A. and Sommer, R.J. and Dieterich, C.
BMC Genomics 13 (1): 254. 19 June 2012

Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach.
Ding, J. and Li, D. and Ohler, U. and Guan, J. and Zhou, S.
BMC Genomics 13 (Suppl 3): S3. 11 June 2012

Proteome dynamics and early salt stress response of the photosynthetic organism Chlamydomonas reinhardtii.
Mastrobuoni, G. and Irgang, S. and Pietzke, M. and Wenzel, M. and Assmus, H.E. and Schulze, W.X. and Kempa, S.
BMC Genomics 13 (1): 215. 31 May 2012


Preimplantation development regulatory pathway construction through a text-mining approach.
Donnard, E. and Barbosa-Silva, A. and Guedes, R.L. and Fernandes, G.R. and Velloso, H. and Kohn, M.J. and Andrade-Navarro, M.A. and Ortega, J.M.
BMC Genomics 12 (Suppl 4): S3. 22 December 2011

Gatekeeper of pluripotency: a common Oct4 transcriptional network operates in mouse eggs and embryonic stem cells.
Zuccotti, M. and Merico, V. and Bellone, M. and Mulas, F. and Sacchi, L. and Rebuzzini, P. and Prigione, A. and Redi, C.A. and Bellazzi, R. and Adjaye, J. and Garagna, S.
BMC Genomics 12 : 345. 5 July 2011


Orthology confers intron position conservation.
Henricson, A. and Forslund, K. and Sonnhammer, E.L.L.
BMC Genomics 11 : 412. 2 July 2010

Comprehensive survey of human brain microRNA by deep sequencing.
Shao, N.Y. and Hu, H.Y. and Yan, Z. and Xu, Y. and Hu, H. and Menzel, C. and Li, N. and Chen, W. and Khaitovich, P.
BMC Genomics 11 (1): 409. 30 June 2010

Deciphering the porcine intestinal microRNA transcriptome.
Sharbati, S. and Friedlaender, M.R. and Sharbati, J. and Hoeke, L. and Chen, W. and Keller, A. and Stahler, P.F. and Rajewsky, N. and Einspanier, R.
BMC Genomics 11 (1): 275. 30 April 2010


3PD: Rapid design of optimal primers for chromosome conformation capture assays.
Froehler, S. and Dieterich, C.
BMC Genomics 10 (1): 635. 29 December 2009

Sequence features associated with microRNA strand selection in humans and flies.
Hu, H.Y. and Yan, Z. and Xu, Y. and Hu, H. and Menzel, C. and Zhou, Y.H. and Chen, W. and Khaitovich, P.
BMC Genomics 10 : 413. 4 September 2009

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii.
May, P. and Christian, J.O. and Kempa, S. and Walther, D.
BMC Genomics 10 : 209. 4 May 2009

Estimating accuracy of RNA-Seq and microarrays with proteomics.
Fu, X. and Fu, N. and Guo, S. and Yan, Z. and Xu, Y. and Hu, H. and Menzel, C. and Chen, W. and Li, Y. and Zeng, R. and Khaitovich, P.
BMC Genomics 10 : 161. 16 April 2009

FragIdent - automatic identification and characterisation of cDNA-fragments.
Seelow, D. and Goehler, H. and Hoffmann, K.
BMC Genomics 10 : 95. 2 March 2009

Three LIF-dependent signatures and gene clusters with atypical expression profiles, identified by transcriptome studies in mouse ES cells and early derivatives.
Trouillas, M. and Saucourt, C. and Guillotin, B. and Gauthereau, X. and Ding, L. and Buchholz, F. and Doss, M.X. and Sachinidis, A. and Hescheler, J. and Hummel, O. and Huebner, N. and Kolde, R. and Vilo, J. and Schultz, H. and Boeuf, H.
BMC Genomics 10 (1): 73. 9 February 2009


Differential RelA- and RelB-dependent gene transcription in LTbetaR-stimulated mouse embryonic fibroblasts.
Lovas, A. and Radke, D. and Albrecht, D. and Yilmaz, Z.B. and Moeller, U. and Habenicht, A.J. and Weih, F.
BMC Genomics 9 : 606. 16 December 2008

Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?
Palleja, A. and Harrington, E.D. and Bork, P.
BMC Genomics 9 (1): 335. 15 July 2008

Non-random retention of protein-coding overlapping genes in Metazoa.
Solda', G. and Suyama, M. and Pelucchi, P. and Boi, S. and Guffanti, A. and Rizzi, E. and Bork, P. and Tenchini, M.L. and Ciccarelli, F.D.
BMC Genomics 9 (1): 174. 16 April 2008

A Caenorhabditis motif compendium for studying transcriptional gene regulation.
Dieterich, C. and Sommer, R.J.
BMC Genomics 9 : 30. 23 January 2008


Spatial preferences of microRNA targets in 3' untranslated regions.
Majoros, W.H. and Ohler, U.
BMC Genomics 8 : 152. 7 June 2007

Large-scale mapping of mutations affecting zebrafish development.
Geisler, R. and Rauch, G.J. and Geiger-Rudolph, S. and Albrecht, A. and van Bebber, F. and Berger, A. and Busch-Nentwich, E. and Dahm, R. and Dekens, M.P. and Dooley, C. and Elli, A.F. and Gehring, I. and Geiger, H. and Geisler, M. and Glaser, S. and Holley, S. and Huber, M. and Kerr, A. and Kirn, A. and Knirsch, M. and Konantz, M. and Kuechler, A.M. and Maderspacher, F. and Neuhauss, S.C. and Nicolson, T. and Ober, E.A. and Praeg, E. and Ray, R. and Rentzsch, B. and Rick, J.M. and Rief, E. and Schauerte, H.E. and Schepp, C.P. and Schoenberger, U. and Schonthaler, H.B. and Seiler, C. and Sidi, S. and Soellner, C. and Wehner, A. and Weiler, C. and Nuesslein-Volhard, C.
BMC Genomics 8 : 11. 9 January 2007


Verification of predicted alternatively spliced Wnt genes reveals two new splice variants (CTNNB1 and LRP5) and altered Axin-1 expression during tumour progression.
Pospisil, H. and Herrmann, A. and Butherus, K. and Pirson, S. and Reich, J.G. and Kemmner, W.
BMC Genomics 7 : 148. 13 June 2006


Comparative promoter region analysis powered by CORG.
Dieterich, C. and Grossmann, S. and Tanzer, A. and Roepcke, S. and Arndt, P.F. and Stadler, P.F. and Vingron, M.
BMC Genomics 6 (1): 24. 2005


Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
Englbrecht, C.C. and Schoof, H. and Boehm, S.
BMC Genomics 5 (1): 39. 5 July 2004


Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome.
Jensen, L.J. and Skovgaard, M. and Sicheritz-Ponten, T. and Jorgensen, M.K. and Lundegaard, C. and Pedersen, C.C. and Petersen, N. and Ussery, D.
BMC Genomics 4 (1): 12. 2 April 2003

This list was generated on Sat Jun 19 02:27:47 2021 CEST.
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