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A multiplexed NMR-reporter approach to measure cellular kinase and phosphatase activities in real-time.
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1 October 2010
Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair.
Luijsterburg, M.S., von Bornstaedt, G., Gourdin, A.M., Politi, A.Z. ORCID: https://orcid.org/0000-0003-4788-0933, Mone, M.J., Warmerdam, D.O., Goedhart, J., Vermeulen, W., van Driel, R. and Hoefer, T.
Journal of Cell Biology 189
(3): 445-463.
3 May 2010
Spatio-temporal dynamics of glycolysis in cell layers. A mathematical model.
Schuetze, J. and Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868
Biosystems 99
(2): 104-108.
February 2010
The tumor-associated antigen EBAG9 negatively regulates the cytolytic capacity of mouse CD8+ T cells.
Rueder, C., Höpken, U.E. ORCID: https://orcid.org/0000-0002-0776-4893, Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868, Mittruecker, H.W., Engels, B. ORCID: https://orcid.org/0000-0001-9682-2954, Erdmann, B., Wollenzin, S., Uckert, W., Dörken, B. ORCID: https://orcid.org/0000-0001-7991-3643 and Rehm, A. ORCID: https://orcid.org/0000-0001-7490-1950
Journal of Clinical Investigation 119
(8): 2184-2203.
August 2009
The impact of the regulatory design on the response of epidermal growth factor receptor-mediated signal transduction towards oncogenic mutations.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868, Dronov, S., Tobin, F. and Goryanin, I.
FEBS Journal 274
(21): 5505-5517.
November 2007
Analysing the robustness of cellular rhythms.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868, Becker-Weimann, S. and Heinrich, R.
Systems Biology 2
(1): 35-41.
March 2005
Modeling feedback loops of the Mammalian circadian oscillator.
Becker-Weimann, S., Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868, Herzel, H. and Kramer, A.
Biophysical Journal 87
(5): 3023-3034.
November 2004
A model of the mammalian circadian oscillator including the REV-ERBalpha module.
Becker-Weimann, S., Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868, Kramer, A. and Herzel, H.
Genome Informatics 15
(1): 3-12.
2004
Temperature dependency and temperature compensation in a model of yeast glycolytic oscillations.
Ruoff, P., Christensen, M.K., Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868 and Heinrich, R.
Biophysical Chemistry 106
(2): 179-192.
1 November 2003
Mathematical analysis of a mechanism for autonomous metabolic oscillations in continuous culture of Saccharomyces cerevisiae.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868, Sohn, H., Heinrich, R. and Kuriyama, H.
FEBS Letters 499
(3): 230-234.
22 June 2001
Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868, Passarge, J., Somsen, O.J., Snoep, J.L., Heinrich, R. and Westerhoff, H.V.
Biophysical Journal 78
(3): 1145-1153.
March 2000
Effect of cellular interaction on glycolytic oscillations in yeast: a theoretical investigation.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868 and Heinrich, R.
Biochemical Journal 345
(Pt 2): 321-334.
15 January 2000
Dynamics of biochemical oscillators in a large number of interacting cells.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868 and Heinrich, R.
Nonlinear Analysis Theory Methods & Applications 30
(3): 1835-1845.
December 1997
Dynamics of two-component biochemical systems in interacting cells; synchronization and desynchronization of oscillations and multiple steady states.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868 and Heinrich, R.
Biosystems 43
(1): 1-24.
August 1997
Book Section
Metabolic and signaling networks.
Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868 and Kempa, S. ORCID: https://orcid.org/0000-0002-0696-9299
In:
Encyclopedia of Systems Biology.
Springer, New York, NY, 1228-1229.
ISBN 978-1-4419-9862-0
5 June 2013
Conference or Workshop Item
Dataset debt in biomedical language modeling.
Fries, J.A., Seelam, N., Altay, G., Weber, L. ORCID: https://orcid.org/0000-0002-2499-472X, Kang, M., Datta, D., Su, R., Garda, S., Wang, B., Ott, S., Samwald, M. and Kusa, W.
In: 2022 Challenges and Perspectives in Creating Large Language Models, 27 May 2022, Virtual, Dublin.
May 2022
Extend, don’t rebuild: Phrasing conditional graph modification as autoregressive sequence labelling.
Weber, L. ORCID: https://orcid.org/0000-0002-2499-472X, Münchmeyer, J., Garda, S. and Leser, U.
In: 2021 Conference on Empirical Methods in Natural Language Processing, EMNLP 2021, 7-11 Nov 2021, Punta Cana, Dominican Republic.
November 2021
Review
From regulation of cell fate decisions towards patient-specific treatments, insights from mechanistic models of signalling pathways.
Simon, M. ORCID: https://orcid.org/0000-0001-7213-9499, Konrath, F. ORCID: https://orcid.org/0000-0002-6843-6252 and Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868
Current Opinion in Systems Biology 39
: 100533.
December 2024
An oscillatory network controlling self-renewal of skeletal muscle stem cells.
Lahmann, I. ORCID: https://orcid.org/0000-0003-0640-4519, Zhang, Y. ORCID: https://orcid.org/0000-0001-5841-225X, Baum, K. ORCID: https://orcid.org/0000-0001-7256-0566, Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868 and Birchmeier, C. ORCID: https://orcid.org/0000-0002-2041-8872
Experimental Cell Research 409
(2): 112933.
15 December 2021
Editorial
Editorial overview: mathematical modeling of disease processes.
Thurley, Kevin and Wolf, Jana ORCID: https://orcid.org/0000-0003-3254-5868
Current Opinion in Systems Biology 42
: 100554.
December 2025
Time-keeping and decision-making in living cells: Part II.
Tyson, J.J. ORCID: https://orcid.org/0000-0001-7560-6013, Csikasz-Nagy, A. ORCID: https://orcid.org/0000-0002-2919-5601, Gonze, D. ORCID: https://orcid.org/0000-0002-9800-2412, Kim, J.K. ORCID: https://orcid.org/0000-0001-7842-2172, Santos, S. ORCID: https://orcid.org/0000-0002-2906-7888 and Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868
Interface Focus 12
(4): 20220024.
10 June 2022
Time-keeping and decision-making in living cells: Part I.
Tyson, J.J. ORCID: https://orcid.org/0000-0001-7560-6013, Csikasz-Nagy, A. ORCID: https://orcid.org/0000-0002-2919-5601, Gonze, D. ORCID: https://orcid.org/0000-0002-9800-2412, Kim, J.K. ORCID: https://orcid.org/0000-0001-7842-2172, Santos, S. ORCID: https://orcid.org/0000-0002-2906-7888 and Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868
Interface Focus 12
(3): 20220011.
6 June 2022
Preprint
Global quantification of mammalian gene expression noise.
Welter, Anna Sophie ORCID: https://orcid.org/0009-0003-9846-3889, Mutschler, Florian ORCID: https://orcid.org/0009-0002-0992-7171, Simon, Mareike ORCID: https://orcid.org/0000-0001-7213-9499, Giacomelli, Chiara ORCID: https://orcid.org/0000-0003-1466-1371, Branscheid, Ann-Christin, Manukyan, Artur ORCID: https://orcid.org/0000-0002-0441-9517, Teixeira Alves, Luiz Gustavo ORCID: https://orcid.org/0000-0002-5822-4168, Gerwien, Maximilian ORCID: https://orcid.org/0000-0002-2884-4155, Kerridge, Robert, Landthaler, Markus ORCID: https://orcid.org/0000-0002-1075-8734, Wolf, Jana ORCID: https://orcid.org/0000-0003-3254-5868 and Selbach, Matthias ORCID: https://orcid.org/0000-0003-2454-8751
bioRxiv
: 2026.05.11.724258.
14 May 2026
Patient-specific B-cell lymphoma modeling identifies cooperating genetic alterations and the critical influence of patient context.
Konrath, Fabian ORCID: https://orcid.org/0000-0002-6843-6252, Denker, Sophy ORCID: https://orcid.org/0000-0002-0736-6019, Schmitt, Clemens ORCID: https://orcid.org/0000-0002-4731-2226, Chapuy, Björn ORCID: https://orcid.org/0000-0002-6485-8773 and Wolf, Jana ORCID: https://orcid.org/0000-0003-3254-5868
Research Square
: rs.3.rs-9022766/v1.
12 March 2026
Contextualizing models: deriving a kinetic model of cancer metabolism including growth via stoichiometric reduction.
Komkova, Daria, Simon, Mareike ORCID: https://orcid.org/0000-0001-7213-9499, Wolf, Jana ORCID: https://orcid.org/0000-0003-3254-5868 and Steuer, Ralf ORCID: https://orcid.org/0000-0003-2217-1655
bioRxiv
: 2025.08.29.672875.
3 September 2025
LoopDetect: comprehensive feedback loop detection in ordinary differential equation models.
Baum, K. ORCID: https://orcid.org/0000-0001-7256-0566 and Wolf, J. ORCID: https://orcid.org/0000-0003-3254-5868
bioRxiv
: 2020.11.15.383703.
17 November 2020
Dataset
Processed data and code for Manuscript: Global quantification of mammalian gene expression noise.
Welter, Anna Sopie ORCID: https://orcid.org/0009-0003-9846-3889, Mutschler, Florian ORCID: https://orcid.org/0009-0002-0992-7171, Simon, Mareike ORCID: https://orcid.org/0000-0001-7213-9499, Giacomelli, Chiara ORCID: https://orcid.org/0000-0003-1466-1371, Branscheid, Ann-Christin, Manukyan, Artur ORCID: https://orcid.org/0000-0002-0441-9517, Teixeira Alves, Luiz Gustavo ORCID: https://orcid.org/0000-0002-5822-4168, Gerwien, Maximilian ORCID: https://orcid.org/0000-0002-2884-4155, Kerridge, Robert, Landthaler, Markus ORCID: https://orcid.org/0000-0002-1075-8734, Wolf, Jana ORCID: https://orcid.org/0000-0003-3254-5868 and Selbach, Matthias ORCID: https://orcid.org/0000-0003-2454-8751
[Dataset]
14 May 2026
Simon2025 - Neuroblastoma energy metabolism.
Simon, Mareike ORCID: https://orcid.org/0000-0001-7213-9499, Benary, Uwe ORCID: https://orcid.org/0000-0001-7801-8639, Baum, Katharina ORCID: https://orcid.org/0000-0001-7256-0566, Schramm, Alexander and Wolf, Jana ORCID: https://orcid.org/0000-0003-3254-5868
[Dataset]
16 April 2025
This list was generated on Mon Jul 13 04:40:29 2026 UTC.
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