Browse by Research Team

2024

Pangenome graph construction from genome alignments with Minigraph-Cactus.
Hickey, G. and Monlong, J. and Ebler, J. and Novak, A.M. and Eizenga, J.M. and Gao, Y. and Marschall, T. and Li, H. and Paten, B.
Nature Biotechnology 42 (4): 663-673. April 2024

Spatial single cell profiling using imaging mass cytometry: inflammatory versus penetrating Crohn's disease.
Lehmann, M. and Weixler, B. and Elezkurtaj, S. and Loddenkemper, C. and Kühl, A.A. and Siegmund, B.
Journal of Crohn's & Colitis : jjae033. 11 March 2024 (In Press)

2023

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome.
Lee, H. and Greer, S.U. and Pavlichin, D.S. and Zhou, B. and Urban, A.E. and Weissman, T. and Ji, H.P.
Cell Reports Methods 3 (8): 100543. 28 August 2023

Functional analysis of structural variants in single cells using Strand-seq.
Jeong, H. and Grimes, K. and Rauwolf, K.K. and Bruch, P.M. and Rausch, T. and Hasenfeld, P. and Benito, E. and Roider, T. and Sabarinathan, R. and Porubsky, D. and Herbst, S.A. and Erarslan-Uysal, B. and Jann, J.C. and Marschall, T. and Nowak, D. and Bourquin, J.P. and Kulozik, A.E. and Dietrich, S. and Bornhauser, B. and Sanders, A.D. and Korbel, J.O.
Nature Biotechnology 41 (6): 832-844. June 2023

A draft human pangenome reference.
Liao, W.W. and Asri, M. and Ebler, J. and Doerr, D. and Haukness, M. and Hickey, G. and Lu, S. and Lucas, J.K. and Monlong, J. and Abel, H.J. and Buonaiuto, S. and Chang, X.H. and Cheng, H. and Chu, J. and Colonna, V. and Eizenga, J.M. and Feng, X. and Fischer, C. and Fulton, R.S. and Garg, S. and Groza, C. and Guarracino, A. and Harvey, W.T. and Heumos, S. and Howe, K. and Jain, M. and Lu, T.Y. and Markello, C. and Martin, F.J. and Mitchell, M.W. and Munson, K.M. and Mwaniki, M.N. and Novak, A.M. and Olsen, H.E. and Pesout, T. and Porubsky, D. and Prins, P. and Sibbesen, J.A. and Sirén, J. and Tomlinson, C. and Villani, F. and Vollger, M.R. and Antonacci-Fulton, L.L. and Baid, G. and Baker, C.A. and Belyaeva, A. and Billis, K. and Carroll, A. and Chang, P.C. and Cody, S. and Cook, D.E. and Cook-Deegan, R.M. and Cornejo, O.E. and Diekhans, M. and Ebert, P. and Fairley, S. and Fedrigo, O. and Felsenfeld, A.L. and Formenti, G. and Frankish, A. and Gao, Yan and Garrison, N.A. and Giron, C.G. and Green, R.E. and Haggerty, L. and Hoekzema, K. and Hourlier, T. and Ji, H.P. and Kenny, E.E. and Koenig, B.A. and Kolesnikov, A. and Korbel, J.O. and Kordosky, J. and Koren, S. and Lee, H.J. and Lewis, A.P. and Magalhães, H. and Marco-Sola, S. and Marijon, P. and McCartney, A. and McDaniel, J. and Mountcastle, J. and Nattestad, M. and Nurk, S. and Olson, N.D. and Popejoy, A.B. and Puiu, D. and Rautiainen, M. and Regier, A.A. and Rhie, A. and Sacco, S. and Sanders, A.D. and Schneider, V.A. and Schultz, B.I. and Shafin, K. and Smith, M.W. and Sofia, H.J. and Abou Tayoun, A.N. and Thibaud-Nissen, F. and Tricomi, F.F. and Wagner, J. and Walenz, B. and Wood, J.M.D. and Zimin, A.V. and Bourque, G. and Chaisson, M.J P and Flicek, Paul and Phillippy, A.M. and Zook, J.M. and Eichler, E.E. and Haussler, D. and Wang, T. and Jarvis, E.D. and Miga, K.H. and Garrison, E. and Marschall, T. and Hall, I.M. and Li, H. and Paten, B.
Nature 617 (7960): 312-324. 11 May 2023

Increased mutation and gene conversion within human segmental duplications.
Vollger, M.R. and Dishuck, P.C. and Harvey, W.T. and DeWitt, W.S. and Guitart, X. and Goldberg, M.E. and Rozanski, A.N. and Lucas, J. and Asri, M. and Munson, K.M. and Lewis, A.P. and Hoekzema, K. and Logsdon, G.A. and Porubsky, D. and Paten, B. and Harris, K. and Hsieh, P.H. and Eichler, E.E.
Nature 617 (7960): 325-334. 11 May 2023

Recombination between heterologous human acrocentric chromosomes.
Guarracino, A. and Buonaiuto, S. and de Lima, L.G. and Potapova, T. and Rhie, A. and Koren, S. and Rubinstein, B. and Fischer, C. and Gerton, J.L. and Phillippy, A.M. and Colonna, V. and Garrison, E.
Nature 617 (7960): 335-343. 11 May 2023

Inversion polymorphism in a complete human genome assembly.
Porubsky, D. and Harvey, W.T. and Rozanski, A.N. and Ebler, J. and Höps, W. and Ashraf, H. and Hasenfeld, P. and Paten, B. and Sanders, A.D. and Marschall, T. and Korbel, J.O. and Eichler, E.E.
Genome Biology 24 (1): 100. 30 April 2023

Gaps and complex structurally variant loci in phased genome assemblies.
Porubsky, D. and Vollger, M.R. and Harvey, W.T. and Rozanski, A.N. and Ebert, P. and Hickey, G. and Hasenfeld, P. and Sanders, A.D. and Stober, C. and Korbel, J.O. and Paten, B. and Marschall, T. and Eichler, E.E.
Genome Research 33 (4): 496-510. April 2023

2022

Single-cell multi-omics allows functional characterization of structural variants.
Korbel, J.O. and Sanders, A.D.
Nature Biotechnology 24 November 2022

Semi-automated assembly of high-quality diploid human reference genomes.
Jarvis, E.D. and Formenti, G. and Rhie, A. and Guarracino, A. and Yang, C. and Wood, J. and Tracey, A. and Thibaud-Nissen, F. and Vollger, M.R. and Porubsky, D. and Cheng, H. and Asri, M. and Logsdon, G.A. and Carnevali, P. and Chaisson, M.J.P. and Chin, C.S. and Cody, S. and Collins, J. and Ebert, P. and Escalona, M. and Fedrigo, O. and Fulton, R.S. and Fulton, L.L. and Garg, S. and Gerton, J.L. and Ghurye, J. and Granat, A. and Green, R.E. and Harvey, W. and Hasenfeld, P. and Hastie, A. and Haukness, M. and Jaeger, E.B. and Jain, M. and Kirsche, M. and Kolmogorov, M. and Korbel, J.O. and Koren, S. and Korlach, J. and Lee, J. and Li, D. and Lindsay, T. and Lucas, J. and Luo, F. and Marschall, T. and Mitchell, M.W. and McDaniel, J. and Nie, F. and Olsen, H.E. and Olson, N.D. and Pesout, T. and Potapova, T. and Puiu, D. and Regier, A. and Ruan, J. and Salzberg, S.L. and Sanders, A.D. and Schatz, M.C. and Schmitt, A. and Schneider, V.A. and Selvaraj, S. and Shafin, K. and Shumate, A. and Stitziel, N.O. and Stober, C. and Torrance, J. and Wagner, J. and Wang, J. and Wenger, A. and Xiao, C. and Zimin, A.V. and Zhang, G. and Wang, T. and Li, H. and Garrison, E. and Haussler, D. and Hall, I. and Zook, J.M. and Eichler, E.E. and Phillippy, A.M. and Paten, B. and Howe, K. and Miga, K.H.
Nature 611 (7936): 519-531. 17 November 2022

A high-resolution map of small-scale inversions in the gibbon genome.
Mercuri, L. and Palmisano, D. and L'Abbate, A. and D'Addabbo, P. and Montinaro, F. and Catacchio, C.R. and Hasenfeld, P. and Ventura, M. and Korbel, J.O. and Sanders, A.D. and Maggiolini, F.A.M. and Antonacci, F.
Genome Research 32 (10): 1941-1951. October 2022

Store-operated calcium entry controls innate and adaptive immune cell function in inflammatory bowel disease.
Letizia, M. and Wang, Y.H. and Kaufmann, U. and Gerbeth, L. and Sand, A. and Brunkhorst, M. and Weidner, P. and Ziegler, J.F. and Böttcher, C. and Schlickeiser, S. and Fernández, C. and Yamashita, M. and Stauderman, K. and Sun, K. and Kunkel, D. and Prakriya, M. and Sanders, A.D. and Siegmund, B. and Feske, S. and Weidinger, C.
EMBO Molecular Medicine : e15687. 2 August 2022

Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders.
Porubsky, D. and Höps, W. and Ashraf, H. and Hsieh, P.H. and Rodriguez-Martin, B. and Yilmaz, F. and Ebler, J. and Hallast, P. and Maggiolini, F.A.M. and Harvey, W.T. and Henning, B. and Audano, P.A. and Gordon, D.S. and Ebert, P. and Hasenfeld, P. and Benito, E. and Zhu, Q. and Lee, C. and Antonacci, F. and Steinrücken, M. and Beck, C.R. and Sanders, A.D. and Marschall, T. and Eichler, E.E. and Korbel, J.O.
Cell 185 (11): 1986-2005. 26 May 2022

Familial long-read sequencing increases yield of de novo mutations.
Noyes, M.D. and Harvey, W.T. and Porubsky, D. and Sulovari, A. and Li, R. and Rose, N.R. and Audano, P.A. and Munson, K.M. and Lewis, A.P. and Hoekzema, K. and Mantere, T. and Graves-Lindsay, T.A. and Sanders, A.D. and Goodwin, S. and Kramer, M. and Mokrab, Y. and Zody, M.C. and Hoischen, A. and Korbel, J.O. and McCombie, W.R. and Eichler, E.E.
American Journal of Human Genetics 109 (4): 631-646. 7 April 2022

Mako: a graph-based pattern growth approach to detect complex structural variants.
Lin, J. and Yang, X. and Kosters, W. and Xu, T. and Jia, Y. and Wang, S. and Zhu, Q. and Ryan, M. and Guo, L. and Zhang, C. and Lee, C. and Devine, S.E. and Eichler, E.E. and Ye, K.
Genomics, Proteomics and Bioinformatics 20 (1): 205-218. February 2022

2021

ASHLEYS: automated quality control for single-cell Strand-seq data.
Eimer, C. and Sanders, A.D. and Korbel, J.O. and Marschall, T. and Ebert, P.
Bioinformatics 37 (19): 3356-3357. 1 October 2021

Construction of whole genomes from scaffolds using single cell strand-seq data.
Hills, M. and Falconer, E. and O'Neill, K. and Sanders, A.D. and Howe, K. and Guryev, V. and Lansdorp, P.M.
International Journal of Molecular Sciences 22 (7): 3617. 1 April 2021

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
Porubsky, D. and Ebert, P. and Audano, P.A. and Vollger, M.R. and Harvey, W.T. and Marijon, P. and Ebler, J. and Munson, K.M. and Sorensen, M. and Sulovari, A. and Haukness, M. and Ghareghani, M. and Lansdorp, P.M. and Paten, B. and Devine, S.E. and Sanders, A.D. and Lee, C. and Chaisson, M.J.P. and Korbel, J.O. and Eichler, E.E. and Marschall, T.
Nature Biotechnology 39 (3): 302-308. March 2021

Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
Ebert, P. and Audano, P. A. and Zhu, Q. and Rodriguez-Martin, B. and Porubsky, D. and Bonder, M.J. and Sulovari, A. and Ebler, J. and Zhou, W. and Serra Mari, R. and Yilmaz, F. and Zhao, X. and Hsieh, P.H. and Lee, J. and Kumar, S. and Lin, J. and Rausch, T. and Chen, Y. and Ren, J. and Santamarina, M. and Höps, W. and Ashraf, H. and Chuang, N.T. and Yang, X. and Munson, K.M. and Lewis, A.P. and Fairley, S. and Tallon, L.J. and Clarke, W.E. and Basile, A.O. and Byrska-Bishop, M. and Corvelo, A. and Evani, U.S. and Lu, T.Y. and Chaisson, M.J.P. and Chen, J. and Li, C. and Brand, H. and Wenger, A.M. and Ghareghani, M. and Harvey, W.T. and Raeder, B. and Hasenfeld, P. and Regier, A.A. and Abel, H.J. and Hall, I.M. and Flicek, P. and Stegle, O. and Gerstein, M.B and Tubio, J.M.C. and Mu, Z. and Li, Y.I. and Shi, X. and Hastie, A.R. and Ye, K. and Chong, Z. and Sanders, A.D. and Zody, M.C. and Talkowski, M.E. and Mills, R. E. and Devine, S.E. and Lee, C. and Korbel, J.O. and Marschall, T. and Eichler, E.E.
Science 372 (6537): eabf7117. 25 February 2021

2020

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.
Warren, W.C. and Harris, R.A. and Haukness, M. and Fiddes, I.T. and Murali, S.C. and Fernandes, J. and Dishuck, P.C. and Storer, J.M and Raveendran, M. and Hillier, L.W. and Porubsky, D. and Mao, Y. and Gordon, D. and Vollger, M.R. and Lewis, A.P. and Munson, K.M. and DeVogelaere, E. and Armstrong, J. and Diekhans, M. and Walker, J.A. and Tomlinson, C. and Graves-Lindsay, T.A. and Kremitzki, M. and Salama, S.R. and Audano, P.A. and Escalona, M. and Maurer, N.W. and Antonacci, F. and Mercuri, L. and Maggiolini, F.A.M. and Catacchio, C.R. and Underwood, J.G. and O'Connor, D.H. and Sanders, A.D. and Korbel, J.O. and Ferguson, B. and Kubisch, H.M. and Picker, L. and Kalin, N.H. and Rosene, D. and Levine, J. and Abbott, D.H. and Gray, S.B. and Sanchez, M.M. and Kovacs-Balint, Z.A. and Kemnitz, J.W. and Thomasy, S.M. and Roberts, J.A. and Kinnally, E.L. and Capitanio, J.P. and Skene, J.H.Pate and Platt, M. and Cole, S.A. and Green, R.E. and Ventura, M. and Wiseman, R.W. and Paten, B. and Batzer, M.A. and Rogers, J. and Eichler, E.E.
Science 370 (6523): eabc6617. 18 December 2020

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution.
Maggiolini, F.A.M. and Sanders, A.D. and Shew, C.J. and Sulovari, A. and Mao, Y. and Puig, M. and Catacchio, C.R. and Dellino, M. and Palmisano, D. and Mercuri, L. and Bitonto, M. and Porubský, D. and Cáceres, M. and Eichler, E.E. and Ventura, M. and Dennis, M.Y. and Korbel, J.O. and Antonacci, F.
Genome Research 30 (11): 1680-1693. November 2020

Recurrent inversion toggling and great ape genome evolution.
Porubsky, D. and Sanders, A.D. and Höps, W. and Hsieh, P. and Sulovari, A. and Li, R. and Mercuri, L. and Sorensen, M. and Murali, S.C. and Gordon, D. and Cantsilieris, S. and Pollen, A.A. and Ventura, M. and Antonacci, F. and Marschall, T. and Korbel, J.O. and Eichler, E.E.
Nature Genetics 52 (8): 849-858. August 2020

Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads.
Vollger, M.R. and Logsdon, G.A. and Audano, P.A. and Sulovari, A. and Porubsky, D. and Peluso, P. and Wenger, A.M. and Concepcion, G.T. and Kronenberg, Z.N. and Munson, K.M. and Baker, C. and Sanders, A.D. and Spierings, D.C.J. and Lansdorp, P.M. and Surti, U. and Hunkapiller, M.W. and Eichler, E.E.
Annals of Human Genetics 84 (2): 125-140. March 2020

Single-cell analysis of structural variations and complex rearrangements with tri-channel processing.
Sanders, A.D. and Meiers, S. and Ghareghani, M. and Porubsky, D. and Jeong, H. and van Vliet, M.A.C.C. and Rausch, T. and Richter-Pechańska, P. and Kunz, J.B. and Jenni, S. and Bolognini, D. and Longo, G.M.C. and Raeder, B. and Kinanen, V. and Zimmermann, J. and Benes, V. and Schrappe, M. and Mardin, B.R. and Kulozik, A.E. and Bornhauser, B. and Bourquin, J.P. and Marschall, T. and Korbel, J.O.
Nature Biotechnology 38 (3): 343-354. March 2020

VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing.
Bolognini, D. and Sanders, A. and Korbel, J.O. and Magi, A. and Benes, V. and Rausch, T.
Bioinformatics 36 (4): 1267-1269. 15 February 2020

breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data.
Porubsky, D. and Sanders, A.D. and Taudt, A. and Colomé-Tatché, M. and Lansdorp, P.M. and Guryev, V.
Bioinformatics 36 (4): 1260-1261. 15 February 2020

The effects of common structural variants on 3D chromatin structure.
Shanta, O. and Noor, A. and Sebat, J.
BMC Genomics 21 (1): 95. 30 January 2020

2019

A fully phased accurate assembly of an individual human genome.
Porubsky, D. and Ebert, P. and Audano, P.A. and Vollger, M.R. and Harvey, W.T. and Munson, K.M. and Sorensen, M. and Sulovari, A. and Haukness, M. and Ghareghani, M. and Lansdorp, P.M. and Paten, B. and Devine, S.E. and Sanders, A.D. and Lee, C. and Chaisson, M.J.P. and Korbel, J.O. and Eichler, E.E. and Marschall, T.
bioRxiv : 855049. 26 November 2019

Single cell tri-channel-processing reveals structural variation landscapes and complex rearrangement processes.
Sanders, A.D. and Meiers, S. and Ghareghani, M. and Porubsky, D. and Jeong, H. and van Vliet, M.A.C.C. and Rausch, T. and Richter-Pechańska, P. and Kunz, J.B. and Jenni, S. and Raeder, B. and Kinanen, V. and Zimmermann, J. and Benes, V. and Schrappe, M. and Mardin, B.R. and Kulozik, A. and Bornhauser, B. and Bourquin, J.P. and Marschall, T. and Korbel, J.O.
bioRxiv : 849604. 21 November 2019

Human-specific tandem repeat expansion and differential gene expression during primate evolution.
Sulovari, A. and Li, R. and Audano, P.A. and Porubsky, D. and Vollger, M.R. and Logsdon, G.A. and Warren, W.C. and Pollen, A.A. and Chaisson, M.J.P. and Eichler, E.E.
Proceedings of the National Academy of Sciences of the United States of America 116 (46): 23243-23253. 12 November 2019

Multi-platform discovery of haplotype-resolved structural variation in human genomes.
Chaisson, M.J.P. and Sanders, A.D. and Zhao, X. and Malhotra, A. and Porubsky, D. and Rausch, T. and Gardner, E.J. and Rodriguez, O.L. and Guo, L. and Collins, R.L. and Fan, X. and Wen, J. and Handsaker, R.E. and Fairley, S. and Kronenberg, Z.N. and Kong, X. and Hormozdiari, F. and Lee, D. and Wenger, A.M. and Hastie, A.R. and Antaki, D. and Anantharaman, T. and Audano, P.A. and Brand, H. and Cantsilieris, S. and Cao, H. and Cerveira, E. and Chen, C. and Chen, X. and Chin, C.S. and Chong, Z. and Chuang, N.T. and Lambert, C.C. and Church, D.M. and Clarke, L. and Farrell, A. and Flores, J. and Galeev, T. and Gorkin, D.U. and Gujral, M. and Guryev, V. and Heaton, W.H. and Korlach, J. and Kumar, S. and Kwon, J.Y. and Lam, E.T. and Lee, J.E. and Lee, J. and Lee, W.P. and Lee, S.P. and Li, S. and Marks, P. and Viaud-Martinez, K. and Meiers, S. and Munson, K.M. and Navarro, F.C.P. and Nelson, B.J. and Nodzak, C. and Noor, A. and Kyriazopoulou-Panagiotopoulou, S. and Pang, A.W.C. and Qiu, Y. and Rosanio, G. and Ryan, M. and Stütz, A. and Spierings, D.C.J. and Ward, A. and Welch, A.E. and Xiao, M. and Xu, W. and Zhang, C. and Zhu, Q. and Zheng-Bradley, X. and Lowy, E. and Yakneen, S. and McCarroll, S. and Jun, G. and Ding, L. and Koh, C.L. and Ren, B. and Flicek, P. and Chen, K. and Gerstein, M.B. and Kwok, P.Y. and Lansdorp, P.M. and Marth, G.T. and Sebat, J. and Shi, X. and Bashir, A. and Ye, K. and Devine, S.E. and Talkowski, M.E. and Mills, R.E. and Marschall, T. and Korbel, J.O. and Eichler, E.E. and Lee, C.
Nature Communications 10 (1): 1784. 16 April 2019

Genomic inversions and GOLGA core duplicons underlie disease instability at the 15q25 locus.
Maggiolini, F.A.M. and Cantsilieris, S. and D'Addabbo, P. and Manganelli, M. and Coe, B.P. and Dumont, B.L. and Sanders, A.D. and Pang, A.W.C. and Vollger, M.R. and Palumbo, O. and Palumbo, P. and Accadia, M. and Carella, M. and Eichler, E.E. and Antonacci, F.
PLoS Genetics 15 (3): e1008075. 27 March 2019

2018

Strand-seq enables reliable separation of long reads by chromosome via expectation maximization.
Ghareghani, M. and Porubskỳ, D. and Sanders, A.D. and Meiers, S. and Eichler, E.E. and Korbel, J.O. and Marschall, T.
Bioinformatics 34 (13): i115-i123. 1 July 2018

Construction of whole genomes from scaffolds using single cell strand-seq data.
Hills, M. and Falconer, E. and O’Neil, K. and Sanders, A.D. and Howe, K. and Guryev, V. and Lansdorp, P.M.
bioRxiv : 271510. 26 February 2018

Computational pan-genomics: status, promises and challenges.

Briefings in Bioinformatics 19 (1): 118-135. January 2018

2017

Dense and accurate whole-chromosome haplotyping of individual genomes.
Porubsky, D. and Garg, S. and Sanders, A.D. and Korbel, J.O. and Guryev, V. and Lansdorp, P.M. and Marschall, T.
Nature Communications 8 (1): 1293. 3 November 2017

Single-cell template strand sequencing by strand-seq enables the characterization of individual homologs.
Sanders, A.D. and Falconer, E. and Hills, M. and Spierings, D.C.J. and Lansdorp, P.M.
Nature Protocols 12 (6): 1151-1176. June 2017

2016

Characterizing polymorphic inversions in human genomes by single-cell sequencing.
Sanders, A.D. and Hills, M. and Porubský, D. and Guryev, V. and Falconer, E. and Lansdorp, P.M.
Genome Research 26 (11): 1575-1587. November 2016

Direct chromosome-length haplotyping by single-cell sequencing.
Porubský, D. and Sanders, A.D. and van Wietmarschen, N. and Falconer, E. and Hills, M. and Spierings, D.C.J. and Bevova, M.R. and Guryev, V. and Lansdorp, P.M.
Genome Research 26 (11): 1565-1574. November 2016

2015

The prognostic impact of CD163-positive macrophages in follicular lymphoma: a study from the BC Cancer Agency and the Lymphoma Study Association.
Kridel, R. and Xerri, L. and Gelas-Dore, B. and Tan, K. and Feugier, P. and Vawda, A. and Canioni, D. and Farinha, P. and Boussetta, S. and Moccia, A.A. and Brice, P. and Chavez, E.A. and Kyle, A.H. and Scott, D.W. and Sanders, A.D. and Fabiani, B. and Slack, G.W. and Minchinton, A.I. and Haioun, C. and Connors, J.M. and Sehn, L.H. and Steidl, C. and Gascoyne, R.D. and Salles, G.
Clinical Cancer Research 21 (15): 3428-3435. August 2015

2012

DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution.
Falconer, E. and Hills, M. and Naumann, U. and Poon, S.S.S. and Chavez, E.A. and Sanders, A.D. and Zhao, Y. and Hirst, M. and Lansdorp, P.M.
Nature Methods 9 (11): 1107-1112. November 2012

2011

Adult spinal cord radial glia display a unique progenitor phenotype.
Petit, A. and Sanders, A.D. and Kennedy, T.E. and Tetzlaff, W. and Glattfelder, K.J. and Dalley, R.A. and Puchalski, R.B. and Jones, A.R. and Roskams, A.J.
PLoS ONE 6 (9): e24538. 12 September 2011

Essential role for Ptpn11 in survival of hematopoietic stem and progenitor cells.
Chan, G. and Cheung, L.S. and Yang, W. and Milyavsky, M. and Sanders, A.D. and Gu, S. and Hong, W.X. and Liu, A.X. and Wang, X. and Barbara, M. and Sharma, T. and Gavin, J. and Kutok, J.L. and Iscove, N.N. and Shannon, K.M. and Dick, J.E. and Neel, B.G. and Braun, B.S.
Blood 117 (16): 4253-4261. 21 April 2011