Algorithms for Molecular Biology
"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures.
Binder, H., Krohn, K. and Preibisch, S.
Algorithms for Molecular Biology 3
: 11.
29 August 2008
"Hook"-calibration of GeneChip-microarrays: theory and algorithm.
Binder, H. and Preibisch, S.
Algorithms for Molecular Biology 3
: 12.
29 August 2008
BMC Biology
Long-term imaging reveals behavioral plasticity during C. elegans dauer exit.
Preusser, F., Neuschulz, A., Junker, J.P., Rajewsky, N. and Preibisch, S.
BMC Biology 20
(1): 277.
13 December 2022
Bioinformatics
FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids.
Preusser, F., Dos Santos, N., Contzen, J., Stachelscheid, H., Costa, E.T., Mergenthaler, P. and Preibisch, S.
Bioinformatics 37
(18): 3088-3090.
15 September 2021
An automated workflow for parallel processing of large multiview SPIM recordings.
Schmied, C., Steinbach, P., Pietzsch, T., Preibisch, S. and Tomancak, P.
Bioinformatics 32
(7): 1112-1114.
1 April 2016
ImgLib2-generic image processing in Java.
Pietzsch, T., Preibisch, S., Tomancak, P. and Saalfeld, S.
Bioinformatics 28
(22): 3009-3011.
15 November 2012
Globally optimal stitching of tiled 3D microscopic image acquisitions.
Preibisch, S., Saalfeld, S. and Tomancak, P.
Bioinformatics 25
(11): 1463-1465.
1 June 2009
Biomedical Optics Express
Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror.
Vladimirov, N., Preusser, F., Wisniewski, J., Yaniv, Z., Desai, R.A., Woehler, A. and Preibisch, S.
Biomedical Optics Express 12
(4): 2186-2203.
1 April 2021
Biophysical Journal
Specific and nonspecific hybridization of oligonucleotide probes on microarrays.
Binder, H. and Preibisch, S.
Biophysical Journal 89
(1): 337-352.
July 2005
Current Opinion in Systems Biology
Light-microscopy methods in C. elegans research.
Breimann, L., Preusser, F. and Preibisch, S.
Current Opinion in Systems Biology 13
: 82-92.
February 2019
Development
Planar cell polarity signalling regulates cell adhesion properties in progenitors of the zebrafish laterality organ.
Oteiza, P., Koeppen, M., Krieg, M., Pulgar, E., Farias, C., Melo, C., Preibisch, S., Mueller, D., Tada, M., Hartel, S., Heisenberg, C.P. and Concha, M.L.
Development 137
(20): 3459-3468.
15 October 2010
Epigenetics & Chromatin
DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis.
La Fortezza, M., Grigolon, G., Cosolo, A., Pindyurin, A., Breimann, L., Blum, H., van Steensel, B. and Classen, A.K.
Epigenetics & Chromatin 11
(1): 27.
5 June 2018
Genes & Development
Oscillations of MyoD and Hes1 proteins regulate the maintenance of activated muscle stem cells.
Lahmann, I., Bröhl, D., Zyrianova, T., Isomura, A., Czajkowski, M.T., Kapoor, V., Griger, J., Ruffault, P.L., Mademtzoglou, D., Zammit, P.S., Wunderlich, T., Spuler, S., Kühn, R., Preibisch, S., Wolf, J., Kageyama, R. and Birchmeier, C.
Genes & Development 33
(9-10): 524-535.
1 May 2019
Journal Of Physics: Condensed Matter
GeneChip microarrays-signal intensities, RNA concentrations and probe sequences.
Binder, H. and Preibisch, S.
Journal Of Physics: Condensed Matter 18
(18): S537-S566.
10 May 2006
Journal of Cell Biology
Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.
Smith, C.S., Preibisch, S., Joseph, A., Abrahamsson, S., Rieger, B., Myers, E., Singer, R.H. and Grunwald, D.
Journal of Cell Biology 209
(4): 609-619.
25 May 2015
Journal of Cell Science
The histone H4 lysine 20 demethylase DPY-21 regulates the dynamics of condensin DC binding.
Breimann, L., Morao, A.K., Kim, J., Jimenez, D.S., Maryn, N., Bikkasani, K., Carrozza, M.J., Albritton, S.E., Kramer, M., Street, L.A., Cerimi, K., Schumann, V.F., Bahry, E., Preibisch, S., Woehler, A. and Ercan, S.
Journal of Cell Science 135
(2): jcs258818.
January 2022
Journal of Visualized Experiments
Using light sheet fluorescence microscopy to image zebrafish eye development.
Icha, J., Schmied, C., Sidhaye, J., Tomancak, P., Preibisch, S. and Norden, C.
Journal of Visualized Experiments 2016
(110): e53966.
10 April 2016
Langmuir
Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays.
Binder, H., Preibisch, S. and Kirsten, T.
Langmuir 21
(20): 9287-9302.
27 September 2005
Methods
Bioimage informatics in the context of drosophila research.
Jug, F., Pietzsch, T., Preibisch, S. and Tomancak, P.
Methods 68
(1): 60-73.
15 June 2014
Methods in Molecular Biology
Calibration of microarray gene-expression data.
Binder, H., Preibisch, S. and Berger, H.
Methods in Molecular Biology 576
: 375-407.
2010
Microscopy and Microanalysis
Restoration of uneven illumination in light sheet microscopy images.
Uddin, M.S., Lee, H.K., Preibisch, S. and Tomancak, P.
Microscopy and Microanalysis 17
(4): 607-613.
August 2011
Molecular Cell
Global analysis of nascent RNA reveals transcriptional pausing in terminal exons.
Carrillo Oesterreich, F., Preibisch, S. and Neugebauer, K.M.
Molecular Cell 40
(4): 571-581.
24 November 2010
Molecular Systems Biology
Stochastic transcription in the p53-mediated response to DNA damage is modulated by burst frequency.
Friedrich, D., Friedel, L., Finzel, A., Herrmann, A., Preibisch, S. and Loewer, A.
Molecular Systems Biology 15
(12): e9068.
1 December 2019
Nature
Gene expression divergence recapitulates the developmental hourglass model.
Kalinka, A.T., Varga, K.M., Gerrard, D.T., Preibisch, S., Corcoran, D.L., Jarrells, J., Ohler, U., Bergman, C.M. and Tomancak, P.
Nature 468
(7325): 811-814.
9 December 2010
Nature Methods
Best practice standards for circular RNA research.
Nielsen, A.F., Bindereif, A., Bozzoni, I., Hanan, M., Hansen, T.B., Irimia, M., Kadener, S., Kristensen, L.S., Legnini, I., Morlando, M., Jarlstad Olesen, M.T., Pasterkamp, R.J., Preibisch, S., Rajewsky, N., Suenkel, C. and Kjems, J.
Nature Methods 19
(10): 1208-1220.
October 2022
BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples.
Hörl, D., Rojas Rusak, F., Preusser, F., Tillberg, P., Randel, N., Chhetri, R.K., Cardona, A., Keller, P.J., Harz, H., Leonhardt, H., Treier, M. and Preibisch, S.
Nature Methods 16
(9): 870-874.
September 2019
The author file: Stephan Preibisch.
Marx, V.
Nature Methods 16
(9): 793.
September 2019
Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.
Vladimirov, N., Wang, C., Höckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C.T., Wittenbach, J.D., Freeman, J., Preibisch, S., Koyama, M., Keller, P.J. and Ahrens, M.B.
Nature Methods 15
(12): 1117-1125.
December 2018
BigDataViewer: visualization and processing for large image data sets.
Pietzsch, T., Saalfeld, S., Preibisch, S. and Tomancak, P.
Nature Methods 12
(6): 481-483.
28 May 2015
Efficient Bayesian-based multiview deconvolution.
Preibisch, S., Amat, F., Stamataki, E., Sarov, M., Singer, R.H., Myers, E. and Tomancak, P.
Nature Methods 11
(6): 645-648.
June 2014
OpenSPIM: an open-access light-sheet microscopy platform.
Pitrone, P.G., Schindelin, J., Stuyvenberg, L., Preibisch, S., Weber, M., Eliceiri, K.W., Huisken, J. and Tomancak, P.
Nature Methods 10
(7): 598-599.
July 2013
Fiji: an open-source platform for biological-image analysis.
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., Tinevez, J.Y., White, D.J., Hartenstein, V., Eliceiri, K., Tomancak, P. and Cardona, A.
Nature Methods 9
(7): 676-682.
July 2012
Software for bead-based registration of selective plane illumination microscopy data.
Preibisch, S., Saalfeld, S., Schindelin, J. and Tomancak, P.
Nature Methods 7
(6): 418-419.
June 2010
Nature Reviews Methods Primers
Light sheet fluorescence microscopy.
Stelzer, E.H.K., Strobl, F., Chang, B.J., Preusser, F., Preibisch, S., McDole, K. and Fiolka, R.
Nature Reviews Methods Primers 1
(1): 73.
3 November 2021
PLoS Biology
An integrated micro- and macroarchitectural analysis of the drosophila brain by computer-assisted serial section electron microscopy.
Cardona, A., Saalfeld, S., Preibisch, S., Schmid, B., Cheng, A., Pulokas, J., Tomancak, P. and Hartenstein, V.
PLoS Biology 8
(10): e1000502.
5 October 2010
PLoS ONE
TrakEM2 software for neural circuit reconstruction.
Cardona, A., Saalfeld, S., Schindelin, J., Arganda-Carreras, I., Preibisch, S., Longair, M., Tomancak, P., Hartenstein, V. and Douglas, R.J.
PLoS ONE 7
(6): e38011.
19 June 2012
Physical Review A
Autoionization in time-dependent density-functional theory.
Kapoor, V.
Physical Review A 93
(6): 063408.
8 June 2016
Proceedings of the National Academy of Sciences of the United States of America
Resolving titin's lifecycle and the spatial organization of protein turnover in mouse cardiomyocytes.
Rudolph, F., Hüttemeister, J., da Silva Lopes, K., Jüttner, R., Yu, L., Bergmann, N., Friedrich, D., Preibisch, S., Wagner, E., Lehnart, S.E., Gregorio, C.C. and Gotthardt, M.
Proceedings of the National Academy of Sciences of the United States of America 116
(50): 25126-25136.
10 December 2019
Science Advances
Regulatory encoding of quantitative variation in spatial activity of a Drosophila enhancer.
Le Poul, Y., Xin, Y., Ling, L., Mühling, B., Jaenichen, R., Hörl, D., Bunk, D., Harz, H., Leonhardt, H., Wang, Y., Osipova, E., Museridze, M., Dharmadhikari, D., Murphy, E., Rohs, R., Preibisch, S., Prud'homme, B. and Gompel, N.
Science Advances 6
(49): eabe2955.
2 December 2020
Scientific Reports
MTrack: automated detection, tracking, and analysis of dynamic microtubules.
Kapoor, V., Hirst, W.G., Hentschel, C., Preibisch, S. and Reber, S.
Scientific Reports 9
(1): 3794.
7 March 2019
Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells.
Mönke, G., Cristiano, E., Finzel, A., Friedrich, D., Herzel, H., Falcke, M. and Loewer, A.
Scientific Reports 7
: 46571.
18 April 2017
bioRxiv
Deciphering the regulatory logic of a Drosophila enhancer through systematic sequence mutagenesis and quantitative image analysis.
Le Poul, Y., Xin, Y., Ling, L., Mühling, B., Jaenichen, R., Hörl, D., Bunk, D., Harz, H., Leonhardt, H., Wang, Y., Osipova, E., Museridze, M., Dharmadhikari, D., Murphy, E., Rohs, R., Preibisch, S., Prud'homme, B. and Gompel, N.
bioRxiv
: 2020.06.24.169748.
25 June 2020
eLife
Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.
Wolff, C., Tinevez, J.Y., Pietzsch, T., Stamataki, E., Harich, B., Guignard, L., Preibisch, S., Shorte, S., Keller, P.J., Tomancak, P. and Pavlopoulos, A.
eLife 7
: e34410.
29 March 2018
This list was generated on Tue Oct 8 11:09:55 2024 UTC.