2026
Supporting-like cells constitute an alternative steroidogenic lineage conserved in amniotes.
Barberá-Aura, Iván 
ORCID: https://orcid.org/0009-0007-6058-3796, Chung, Wai-Yee, Dujardin, Emilie ORCID: https://orcid.org/0000-0002-8189-8742, Hurtado, Alicia ORCID: https://orcid.org/0000-0001-6267-704X, Galmiche, Mathieu ORCID: https://orcid.org/0000-0001-5840-4786, Mayère, Chloé ORCID: https://orcid.org/0000-0002-9254-4886, Guy, Maëva ORCID: https://orcid.org/0009-0007-7802-5186, Mandon-Pépin, Béatrice ORCID: https://orcid.org/0000-0002-5424-0822, Franke, Vedran ORCID: https://orcid.org/0000-0003-3606-6792, Jaszczyszyn, Yan ORCID: https://orcid.org/0000-0002-2269-677X, Acemel, Rafael D. ORCID: https://orcid.org/0000-0003-4120-0140, Rudaz, Serge ORCID: https://orcid.org/0000-0002-4180-5417, Mckey, Jennifer ORCID: https://orcid.org/0000-0002-2640-1502, Nef, Serge ORCID: https://orcid.org/0000-0001-5462-0676, Pailhoux, Eric ORCID: https://orcid.org/0000-0001-8012-9143 and Lupiáñez, Darío G. ORCID: https://orcid.org/0000-0002-3165-036X
bioRxiv
: 2026.05.25.726204.
28 May 2026
Chromatin spatial analysis by METALoci unveils sex-determining 3D regulatory hubs.
Mota-Gómez, Irene ORCID: https://orcid.org/0000-0001-8308-8017, Rodríguez, Juan Antonio, Dupont, Shannon, Hurtado, Alicia ORCID: https://orcid.org/0000-0001-6267-704X, Cadenas, Vanessa, Zuber, Leo, Maceda, Iago, Lao, Oscar, Jedamzick, Johanna, Kühn, Ralf ORCID: https://orcid.org/0000-0003-1694-9803, Lacadie, Scott ORCID: https://orcid.org/0000-0002-0893-5340, García-Moreno, Sara Alexander, Torres, Miguel, Real, Francisca M. ORCID: https://orcid.org/0000-0003-0692-2260, Acemel, Rafael D., Capel, Blanche, Marti-Renom, Marc A. and Lupíañez, Dario G. ORCID: https://orcid.org/0000-0002-3165-036X
Nature Structural & Molecular Biology 33
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April 2026
Flexibility of cell fates and functions across sex determination systems revealed by comparative single-cell analyses.
Acemel, Rafael D. ORCID: https://orcid.org/0000-0003-4120-0140, Tezak, Boris ORCID: https://orcid.org/0000-0002-2621-4272, Chung, Vicky Wai Yee, Hurtado, Alicia ORCID: https://orcid.org/0000-0001-6267-704X, Albertson, Scarlett, Weber, Ceri J. ORCID: https://orcid.org/0000-0001-8541-0110, Capel, Blanche ORCID: https://orcid.org/0000-0002-6587-0969 and Lupiáñez, Darío G. ORCID: https://orcid.org/0000-0002-3165-036X
bioRxiv
: 2026.01.29.701242.
30 January 2026
2025
Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene programme in bat wing development.
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Nature Ecology & Evolution 9
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September 2025
Gonadal sex and temperature independently influence germ cell differentiation and meiotic progression in Trachemys scripta.
Hatkevich, T., Tezak, B.M., Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Yee Chung, V.W., Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X and Capel, B. ORCID: https://orcid.org/0000-0002-6587-0969
Proceedings of the National Academy of Sciences of the United States of America 122
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7 January 2025
2024
Temperature dependent sex determination in the turtle Trachemys scripta.
Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Tezak, B., Chung, W.Y., Webber, C., Mota, I., Hurtado, A. ORCID: https://orcid.org/0000-0001-6267-704X, Capel, B. and Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
[Dataset]
30 December 2024
Temperature dependent sex determination in the turtle Trachemys scripta.
[Dataset]
1 July 2024
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Nature Communications 15
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7 May 2024
Marsupial genomes reveal how a skin membrane for gliding evolved.
Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
Nature 629
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2 May 2024
Cancer evolution: a multifaceted affair.
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Cancer Discovery 14
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1 January 2024
2023
Cell adhesion and immune response, two main functions altered in the transcriptome of seasonally regressed testes of two mammalian species.
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Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 340
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May 2023
The little skate genome and the evolutionary emergence of wing-like fins.
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Nature 616
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20 April 2023
Dynamic antagonism between key repressive pathways maintains the placental epigenome.
Weigert, R., Hetzel, S. ORCID: https://orcid.org/0000-0002-4783-3814, Bailly, N., Haggerty, C., Ilik, I.A., Yung, P.Y.K., Navarro, C., Bolondi, A. ORCID: https://orcid.org/0000-0002-1096-9435, Kumar, A.S. ORCID: https://orcid.org/0000-0001-7918-6706, Anania, C. ORCID: https://orcid.org/0000-0003-1549-4157, Brändl, B., Meierhofer, D., Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Müller, F.J. ORCID: https://orcid.org/0000-0001-9478-8430, Aktas, T. ORCID: https://orcid.org/0000-0003-1599-9454, Elsässer, S.J. ORCID: https://orcid.org/0000-0001-8724-4849, Kretzmer, H., Smith, Z.D. ORCID: https://orcid.org/0000-0002-9283-1957 and Meissner, A. ORCID: https://orcid.org/0000-0001-8646-7469
Nature Cell Biology 25
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April 2023
Evolution of 3D chromatin organization at different scales.
Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140 and Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
Current Opinion in Genetics & Development 78
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February 2023
2022
Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis.
Mota-Gómez, I. ORCID: https://orcid.org/0000-0001-8308-8017, Rodriguez, J.A., Dupont, S., Hurtado, A. ORCID: https://orcid.org/0000-0001-6267-704X, Cadenas, V., Lao, O., Jedamzick, J., Kuhn, R. ORCID: https://orcid.org/0000-0003-1694-9803, Lacadie, S. ORCID: https://orcid.org/0000-0002-0893-5340, Garcia-Moreno, S.A., Torres, M., Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260, Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Capel, B., Marti-Renom, M.A. and Lupiañez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
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21 November 2022
Analysis of copy number variation in men with non-obstructive azoospermia.
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Andrology 10
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November 2022
Sox9 is required for nail bed differentiation and digit tip regeneration.
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Journal of Investigative Dermatology 142
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October 2022
Assessing evolutionary and developmental transcriptome dynamics in homologous cell types.
Feregrino, C. ORCID: https://orcid.org/0000-0003-0300-5483 and Tschopp, P. ORCID: https://orcid.org/0000-0001-7339-3990
Developmental Dynamics 251
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September 2022
C/EBPβ regulates lipid metabolism and Pparg isoform 2 expression in alveolar macrophages.
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Science Immunology 7
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September 2022
In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation.
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Nature Genetics 54
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July 2022
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
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Nature Genetics 54
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2021
Non-coding RNAs: lncRNAs, miRNAs, and piRNAs in sexual development.
Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313, Hurtado, A. ORCID: https://orcid.org/0000-0001-6267-704X, Jiménez, R. ORCID: https://orcid.org/0000-0003-4103-8219 and Barrionuevo, F.J.
Sexual Development 15
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2020
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality.
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9 October 2020
Order and disorder: abnormal 3D chromatin organization in human disease.
Anania, C. ORCID: https://orcid.org/0000-0003-1549-4157 and Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
Briefings in Functional Genomics 19
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March 2020
2019
A (3D-nuclear) space odyssey: making sense of Hi-C maps.
Mota-Gómez, I. ORCID: https://orcid.org/0000-0001-8308-8017 and Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X
Genes 10
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29 May 2019
Crowdfunded whole-genome sequencing of the celebrity cat Lil BUB identifies causal mutations for her osteopetrosis and polydactyly.
Bridavsky, M., Kuhl, H., Woodruf, A., Kornak, U., Timmermann, B., Mages, N., Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Symmons, O. and Ibrahim, D.M.
bioRxiv
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22 February 2019
GOPHER: Generator Of Probes for capture Hi-C Experiments at high Resolution.
Hansen, P., Ali, S., Blau, H., Danis, D., Hecht, J., Kornak, U., Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Mundlos, S., Steinhaus, R. and Robinson, P.N. ORCID: https://orcid.org/0000-0002-0736-9199
BMC Genomics 20
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14 January 2019
2018
First genome-wide CNV mapping in FELIS CATUS using next generation sequencing data.
Genova, F., Longeri, M., Lyons, L.A., Bagnato, A. and Strillacci, M.G.
BMC Genomics 19
(1): 895.
10 December 2018
Unraveling the transcriptional regulation of TWIST1 in limb development.
Hirsch, N., Eshel, R., Bar Yaacov, R., Shahar, T., Shmulevich, F., Dahan, I., Levaot, N., Kaplan, T., Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X and Birnbaum, R..
PLoS Genetics 14
(10): e1007738.
29 October 2018
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis.
Kragesteen, B.K. ORCID: https://orcid.org/0000-0002-9999-2067, Spielmann, M. ORCID: https://orcid.org/0000-0002-0583-4683, Paliou, C. ORCID: https://orcid.org/0000-0003-3383-2527, Heinrich, V., Schöpflin, R., Esposito, A. ORCID: https://orcid.org/0000-0002-5903-8439, Annunziatella, C., Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Jerković, I. ORCID: https://orcid.org/0000-0001-9707-8303, Harabula, I. ORCID: https://orcid.org/0000-0002-9094-0519, Guckelberger, P. ORCID: https://orcid.org/0000-0002-1057-2518, Pechstein, M., Wittler, L., Chan, Wi.L., Franke, M. ORCID: https://orcid.org/0000-0002-4626-3290, Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Kraft, K. ORCID: https://orcid.org/0000-0002-2011-6946, Timmermann, B., Vingron, M. ORCID: https://orcid.org/0000-0002-1765-4241, Visel, A. ORCID: https://orcid.org/0000-0002-4130-7784, Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416, Mundlos, S. ORCID: https://orcid.org/0000-0002-9788-3166 and Andrey, G. ORCID: https://orcid.org/0000-0002-0911-4907
Nature Genetics 50
(10): 1463-1473.
October 2018
Structural variation in the 3D genome.
Spielmann, M. ORCID: https://orcid.org/0000-0002-0583-4683, Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X and Mundlos, S. ORCID: https://orcid.org/0000-0002-9788-3166
Nature Reviews Genetics 19
(7): 453-467.
July 2018
Polymer physics predicts the effects of structural variants on chromatin architecture.
Bianco, S. ORCID: https://orcid.org/0000-0001-5819-060X, Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Chiariello, A.M. ORCID: https://orcid.org/0000-0002-6112-0167, Annunziatella, C., Kraft, K., Schöpflin, R., Wittler, L., Andrey, G., Vingron, M., Pombo, A. ORCID: https://orcid.org/0000-0002-7493-6288, Mundlos, S. and Nicodemi, M. ORCID: https://orcid.org/0000-0002-8416-6416
Nature Genetics 50
(5): 662-667.
May 2018
2017
Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog).
Will, A.J., Cova, G., Osterwalder, M. ORCID: https://orcid.org/0000-0002-1969-2313, Chan, W.L., Wittler, L., Brieske, N., Heinrich, V., de Villartay, J.P., Vingron, M. ORCID: https://orcid.org/0000-0002-1765-4241, Klopocki, E., Visel, A. ORCID: https://orcid.org/0000-0002-4130-7784, Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X and Mundlos, S. ORCID: https://orcid.org/0000-0002-9788-3166
Nature Genetics 49
(10): 1539-1545.
October 2017
2016
Breaking TADs: how alterations of chromatin domains result in disease.
Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Spielmann, M. and Mundlos, S.
Trends in Genetics 32
(4): 225-237.
April 2016
Exome sequencing and CRISPR/Cas genome editing identify mutations of ZAK as a cause of limb defects in humans and mice.
Spielmann, M., Kakar, N., Tayebi, N., Leettola, C., Nürnberg, G., Sowada, N., Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Harabula, I. ORCID: https://orcid.org/0000-0002-9094-0519, Flöttmann, R., Horn, D., Chan, W.L., Wittler, L., Yilmaz, R., Altmüller, J. ORCID: https://orcid.org/0000-0003-4372-1521, Thiele, H., van Bokhoven, H., Schwartz, C.E., Nürnberg, P., Bowie, J.U., Ahmad, J., Kubisch, C. ORCID: https://orcid.org/0000-0003-4220-0978, Mundlos, S. and Borck, G.
Genome Research 26
(2): 183-191.
February 2016
2015
Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Kraft, K., Heinrich, V., Krawitz, P. ORCID: https://orcid.org/0000-0002-3194-8625, Brancati, F., Klopocki, E. ORCID: https://orcid.org/0000-0003-1438-2081, Horn, D., Kayserili, H., Opitz, J.M., Laxova, R., Santos-Simarro, F., Gilbert-Dussardier, B., Wittler, L., Borschiwer, M., Haas, S.A., Osterwalder, M., Franke, M., Timmermann, B., Hecht, J., Spielmann, M., Visel, A. ORCID: https://orcid.org/0000-0002-4130-7784 and Mundlos, S.
Cell 161
(5): 1012-1025.
21 May 2015
Deletions, inversions, duplications: engineering of structural variants using CRISPR/Cas in mice.
Kraft, K., Geuer, S., Will, A.J., Chan, W.L., Paliou, C., Borschiwer, M., Harabula, I. ORCID: https://orcid.org/0000-0002-9094-0519, Wittler, L., Franke, M., Ibrahim, D.M. ORCID: https://orcid.org/0000-0002-0019-3354, Kragesteen, B.K., Spielmann, M., Mundlos, S., Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X and Andrey, G. ORCID: https://orcid.org/0000-0002-0911-4907
Cell Reports 10
(5): 833-839.
10 February 2015
2013
A microRNA (mmu-miR-124) prevents Sox9 expression in developing mouse ovarian cells.
Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260, Sekido, R., Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Lovell-Badge, R., Jiménez, R. ORCID: https://orcid.org/0000-0003-4103-8219 and Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313
Biology of Reproduction 89
(4): 78.
1 October 2013
Positive and negative unintended human-induced effects on Iberian mole abundance at the edge of its distribution area.
García-López de Hierro, L., Moleón, M. ORCID: https://orcid.org/0000-0002-3126-619X, Lupiáñez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Virgós, E. and Jiménez, R. ORCID: https://orcid.org/0000-0003-4103-8219
Mammalian Biology 78
(4): 276-282.
June 2013
Identification of live germ-cell desquamation as a major mechanism of seasonal testis regression in mammals: a study in the Iberian mole (Talpa occidentalis).
Dadhich, R.K., Barrionuevo, F.J. ORCID: https://orcid.org/0000-0003-2651-1530, Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260, Lupiañez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Ortega, E., Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313 and Jiménez, R. ORCID: https://orcid.org/0000-0003-4103-8219
Biology of Reproduction 88
(4): 101.
1 April 2013
2012
Morphology and ultrastructure of the chorioallantoic placenta of the Iberian mole (Talpa occidentalis) with special reference to heterophagous areolas and the nature of interhaemal barrier.
Siniza, S., Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Jimenez, R. ORCID: https://orcid.org/0000-0003-4103-8219 and Zeller, U.
Journal of Anatomy 221
(2): 164-173.
August 2012
Pattern and density of vascularization in mammalian testes, ovaries, and ovotestes.
Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260, Dadhich, R.K., Carmona, F.D. ORCID: https://orcid.org/0000-0002-1427-7639, Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313, Barrionuevo, F.J. ORCID: https://orcid.org/0000-0003-2651-1530 and Jimenez, R. ORCID: https://orcid.org/0000-0003-4103-8219
Journal of Experimental Zoology Part B : Molecular and Developmental Evolution 318
(3): 170-181.
May 2012
2011
Expression of genes controlling testicular development in adult testis of the seasonally breeding iberian mole.
Dadhich, R.K., Barrionuevo, F.J. ORCID: https://orcid.org/0000-0003-2651-1530, Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260, Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313 and Jimenez, R. ORCID: https://orcid.org/0000-0003-4103-8219
Sexual Development 5
(2): 77-88.
March 2011
2009
SOX9 is not required for the cellular events of testicular organogenesis in XX mole ovotestes.
Carmona, F.D. ORCID: https://orcid.org/0000-0002-1427-7639, Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Real, F.M. ORCID: https://orcid.org/0000-0003-0692-2260, Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313, Zurita, F. and Jimenez, R. ORCID: https://orcid.org/0000-0003-4103-8219
Journal of Experimental Zoology Part B : Molecular and Developmental Evolution 312
(7): 734-748.
15 November 2009
The spatio-temporal pattern of testis organogenesis in mammals - insights from the mole.
Carmona, F.D. ORCID: https://orcid.org/0000-0002-1427-7639, Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Martin, J.E. ORCID: https://orcid.org/0000-0002-0051-8868, Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313, Jimenez, R. ORCID: https://orcid.org/0000-0003-4103-8219 and Zurita, F.
International Journal of Developmental Biology 53
(7): 1035-1044.
2009
2007
Meiosis onset is postponed to postnatal stages during ovotestis development in female moles.
Zurita, F., Carmona, F.D. ORCID: https://orcid.org/0000-0002-1427-7639, Lupianez, D.G. ORCID: https://orcid.org/0000-0002-3165-036X, Barrionuevo, F.J. ORCID: https://orcid.org/0000-0003-2651-1530, Guioli, S., Burgos, M. ORCID: https://orcid.org/0000-0003-4446-9313 and Jimenez, R. ORCID: https://orcid.org/0000-0003-4103-8219
Sexual Development 1
(1): 66-76.
2007
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