Browse by Research Team

Biochimica et Biophysica Acta - Bioenergetics

The ultrastructure of Chlorobaculum tepidum revealed by cryo-electron tomography.
Kudryashev, M. and Aktoudianaki, A. and Dedoglou, D. and Stahlberg, H. and Tsiotis, G.
Biochimica et Biophysica Acta - Bioenergetics 1837 (10): 1635-1642. October 2014

Biotechnology Journal

Automated classification of Plasmodium sporozoite movement patterns reveals a shift towards productive motility during salivary gland infection.
Hegge, S. and Kudryashev, M. and Smith, A. and Frischknecht, F.
Biotechnology Journal 4 (6): 903-913. June 2009

Special: biotech in Russia.
Rabinovich, M. and Burghardt, N. and Gorzka, G. and Kudryashev, M. and Leonov, A and Konov, A
Biotechnology Journal 2 (7): 775-789. July 2007

Meeting report: Breaking barriers in microscopy.
Kudryashev, M. and Münter, S.
Biotechnology Journal 2 (1): 30-32. January 2007

Cell

Structure of the type VI secretion system contractile sheath.
Kudryashev, M. and Wang, R.Y.R. and Brackmann, M. and Scherer, S. and Maier, T. and Baker, D. and DiMaio, F. and Stahlberg, H. and Egelman, E.H. and Basler, M.
Cell 160 (5): 952-962. 26 February 2015

Cell Host & Microbe

Plasmodium sporozoite motility is modulated by the turnover of discrete adhesion sites.
Münter, S. and Sabass, B. and Selhuber-Unkel, C. and Kudryashev, M. and Hegge, S. and Engel, U. and Spatz, J.P. and Matuschewski, K. and Schwarz, U.S. and Frischknecht, F.
Cell Host & Microbe 6 (6): 551-562. 17 December 2009

Cellular Microbiology

Electron tomography of Plasmodium falciparum merozoites reveals core cellular events that underpin erythrocyte invasion.
Hanssen, E. and Dekiwadia, C. and Riglar, D.T. and Rug, M. and Lemgruber, L. and Cowman, A.F. and Cyrklaff, M. and Kudryashev, M. and Frischknecht, F. and Baum, J. and Ralph, S.A.
Cellular Microbiology 15 (9): 1457-1472. September 2013

Structural basis for chirality and directional motility of Plasmodium sporozoites.
Kudryashev, M. and Münter, S. and Lemgruber, L. and Montagna, G. and Stahlberg, H. and Matuschewski, K. and Meissner, M. and Cyrklaff, M. and Frischknecht, F.
Cellular Microbiology 14 (11): 1757-1768. November 2012

Evidence of direct cell-cell fusion in Borrelia by cryogenic electron tomography.
Kudryashev, M. and Cyrklaff, M. and Alex, B. and Lemgruber, L. and Baumeister, W. and Wallich, R. and Frischknecht, F.
Cellular Microbiology 13 (5): 731-741. May 2011

Positioning of large organelles by a membrane-associated cytoskeleton in Plasmodium sporozoites.
Kudryashev, M. and Lepper, Simone and Stanway, Rebecca and Bohn, Stefan and Baumeister, Wolfgang and Cyrklaff, Marek and Frischknecht, Friedrich
Cellular Microbiology 12 (3): 362-371. March 2010

Computational and Structural Biotechnology Journal

Limiting factors in single particle cryo electron tomography.
Kudryashev, M. and Castaño-Díez, D. and Stahlberg, H.
Computational and Structural Biotechnology Journal 1 (2): e201207002. July 2012

Current Opinion in Structural Biology

Recent progress in structure and dynamics of dual-membrane-spanning bacterial nanomachines.
Gold, V. and Kudryashev, M.
Current Opinion in Structural Biology 39 : 1-7. August 2016

EMBO Journal

Structural insights into the activation mechanism of antimicrobial GBP1.
Weismehl, M. and Chu, X. and Kutsch, M. and Lauterjung, P. and Herrmann, C. and Kudryashev, M. and Daumke, O.
EMBO Journal 43 (4): 615-636. 15 February 2024

EMBO Reports

Structure of RyR1 in native membranes.
Chen, W. and Kudryashev, M.
EMBO Reports 21 (5): e49891. 6 May 2020

Environmental Microbiology

Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress.
Devos, S. and Van Putte, W. and Vitse, J. and Van Driessche, G. and Stremersch, S. and Van Den Broek, W. and Raemdonck, K. and Braeckmans, K. and Stahlberg, H. and Kudryashev, M. and Savvides, S.N. and Devreese, B.
Environmental Microbiology 19 (10): 3930-3937. October 2017

European Signal Processing Conference (EUSIPCO)

Fast alignment of limited angle tomograms by projected cross correlation.
Sanchez, R.M. and Mester, R. and Kudryashev, M.
In: 2019 27th European Signal Processing Conference (EUSIPCO), 2-6 Sep 2019, A Coruna, Spain. 18 November 2019

FASEB Journal

Key factors regulating Plasmodium berghei sporozoite survival and transformation revealed by an automated visual assay.
Hegge, S. and Kudryashev, M. and Barniol, L. and Frischknecht, F.
FASEB Journal 24 (12): 5003-5012. December 2010

FEMS Microbiology Reviews

Functional insights into pathogen biology from 3D electron microscopy.
Cyrklaff, M. and Frischknecht, F. and Kudryashev, M.
FEMS Microbiology Reviews 41 (6): 828-853. 1 November 2017

Journal of Cell Biology

Luminal particles within cellular microtubules.
Garvalov, B.K. and Zuber, B. and Bouchet-Marquis, C. and Kudryashev, M. and Gruska, M. and Beck, M. and Leis, A. and Frischknecht, F. and Bradke, F. and Baumeister, W. and Dubochet, J. and Cyrklaff, M.
Journal of Cell Biology 174 (6): 759-765. 11 September 2006

Journal of Experimental Medicine

Cryoelectron tomography reveals periodic material at the inner side of subpellicular microtubules in apicomplexan parasites.
Cyrklaff, M. and Kudryashev, M. and Leis, A. and Leonard, K. and Baumeister, W. and Menard, R. and Meissner, M. and Frischknecht, F.
Journal of Experimental Medicine 204 (6): 1281-1287. 11 June 2007

Journal of Structural Biology

Structure of the Yersinia injectisome in intracellular host cell phagosomes revealed by cryo FIB electron tomography.
Berger, C. and Ravelli, R.B.G. and López-Iglesias, C. and Kudryashev, M. and Diepold, A. and Peters, P.J.
Journal of Structural Biology 213 (1): 107701. March 2021

Dynamo Catalogue: geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms.
Castaño-Díez, D. and Kudryashev, M. and Stahlberg, H.
Journal of Structural Biology 197 (2): 135-144. February 2017

Improving the quality of electron tomography image volumes using pre-reconstruction filtering.
Maiorca, M. and Hanssen, E. and Kazmierczak, E. and Maco, B. and Kudryashev, M. and Hall, R. and Quiney, H. and Tilley, L.
Journal of Structural Biology 180 (1): 132-142. October 2012

Assessing the benefits of focal pair cryo-electron tomography.
Kudryashev, M. and Stahlberg, H. and Castaño-Díez, D.
Journal of Structural Biology 178 (2): 88-97. May 2012

Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments.
Castaño-Díez, D. and Kudryashev, M. and Arheit, M. and Stahlberg, H.
Journal of Structural Biology 178 (2): 139-151. May 2012

Distinct in situ structures of the Borrelia flagellar motor.
Kudryashev, M. and Cyrklaff, M. and Wallich, R. and Baumeister, W. and Frischknecht, F.
Journal of Structural Biology 169 (1): 54-61. January 2010

Journal of Virology

An unusual aspartic acid cluster in the reovirus attachment fiber s1 mediates stability at low pH and preserves trimeric organization.
Glorani, G. and Ruwolt, M. and Holton, N. and Loll, B. and Neu, U.
Journal of Virology 96 (8): e0033122. April 2022

Lecture Notes in Computer Science

Fast cross correlation for limited angle tomographic data.
Sánchez, R.M. and Mester, R. and Kudryashev, M.
Lecture Notes in Computer Science 11482 : 415-426. 2019

Malaria Journal

Cryo-electron tomography reveals four-membrane architecture of the Plasmodium apicoplast.
Lemgruber, L. and Kudryashev, M. and Dekiwadia, C. and Riglar, D.T. and Baum, J. and Stahlberg, H. and Ralph, S.A. and Frischknecht, F.
Malaria Journal 12 : 25. 19 January 2013

Methods in Cell Biology

Subtomogram averaging from cryo-electron tomograms.
Leigh, K.E. and Navarro, P.P. and Scaramuzza, S. and Chen, W. and Zhang, Y. and Castaño-Díez, D. and Kudryashev, M.
Methods in Cell Biology 152 : 217-259. 2019

Molecular Microbiology

KAHRP dynamically relocalizes to remodeled actin junctions and associates with knob spirals in Plasmodium falciparum-infected erythrocytes.
Sanchez, C.P. and Patra, P. and Chang, S.Y.S. and Karathanasis, C. and Hanebutte, L. and Kilian, N. and Cyrklaff, M. and Heilemann, M. and Schwarz, U.S. and Kudryashev, M. and Lanzer, M.
Molecular Microbiology 117 (2): 274-292. February 2022

Yersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation.
Kudryashev, M. and Diepold, A. and Amstutz, M. and Armitage, J.P. and Stahlberg, H. and Cornelis, G.R.
Molecular Microbiology 95 (5): 875-884. March 2015

Comparative cryo-electron tomography of pathogenic Lyme disease spirochetes.
Kudryashev, M. and Cyrklaff, M. and Baumeister, W. and Simon, M.M. and Wallich, R. and Frischknecht, F.
Molecular Microbiology 71 (6): 1415-1434. March 2009

Nature

Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1.
Faelber, K. and Dietrich, L. and Noel, J.K. and Wollweber, F. and Pfitzner, A.K. and Mühleip, A. and Sánchez, R. and Kudryashev, M. and Chiaruttini, N. and Lilie, H. and Schlegel, J. and Rosenbaum, E. and Hessenberger, M. and Matthaeus, C. and Kunz, S. and von der Malsburg, A. and Noé, F. and Roux, A. and van der Laan, M. and Kühlbrandt, W. and Daumke, O.
Nature 571 (7765): 429-433. 18 July 2019

Nature Chemical Biology

Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism.
Degiacomi, M.T. and Iacovache, I. and Pernot, L. and Chami, M. and Kudryashev, M. and Stahlberg, H. and van der Goot, F.G. and Dal Peraro, M.
Nature Chemical Biology 9 (10): 623-629. October 2013

Nature Communications

Streamlined structure determination by cryo-electron tomography and subtomogram averaging using TomoBEAR.
Balyschew, N. and Yushkevich, A. and Mikirtumov, V. and Sanchez, R.M. and Sprink, T. and Kudryashev, M.
Nature Communications 14 (1): 6543. 17 October 2023

Asymmetric opening of the homopentameric 5-HT(3A) serotonin receptor in lipid bilayers.
Zhang, Y. and Dijkman, P.M. and Zou, R. and Zandl-Lang, M. and Sanchez, R.M. and Eckhardt-Strelau, L. and Köfeler, H. and Vogel, H. and Yuan, S. and Kudryashev, M.
Nature Communications 12 (1): 1074. 16 February 2021

Subnanometer-resolution structure determination in situ by hybrid subtomogram averaging - single particle cryo-EM.
Sanchez, R.M. and Zhang, Y. and Chen, W. and Dietrich, L. and Kudryashev, M.
Nature Communications 11 (1): 3709. 24 July 2020

Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy.
Bhaskara, R.M. and Grumati, P. and Garcia-Pardo, J. and Kalayil, S. and Covarrubias-Pinto, A. and Chen, W. and Kudryashev, M. and Dikic, I. and Hummer, G.
Nature Communications 10 (1): 2370. 30 May 2019

Structure of a bacterial type III secretion system in contact with a host membrane in situ.
Nans, A. and Kudryashev, M. and Saibil, H.R. and Hayward, R.D.
Nature Communications 6 : 10114. 11 December 2015

Nature Methods

De novo protein structure determination from near-atomic-resolution cryo-EM maps.
Wang, R.Y.R. and Kudryashev, M. and Li, X. and Egelman, E.H. and Basler, M. and Cheng, Y. and Baker, D. and DiMaio, F.
Nature Methods 12 (4): 335-338. April 2015

Nature Microbiology

Cryo-EM structure of the extended type VI secretion system sheath-tube complex.
Wang, J. and Brackmann, M. and Castaño-Díez, D. and Kudryashev, M. and Goldie, K.N. and Maier, T. and Stahlberg, H. and Basler, M.
Nature Microbiology 2 (11): 1507-1512. November 2017

PLoS Biology

Composition, formation, and regulation of the cytosolic c-ring, a dynamic component of the type III secretion injectisome.
Diepold, A. and Kudryashev, M. and Delalez, N.J. and Berry, R.M. and Armitage, J.P.
PLoS Biology 13 (1): e1002039. 15 January 2015

PLoS Pathogens

Environmental constraints guide migration of malaria parasites during transmission.
Hellmann, J.K. and Münter, S. and Kudryashev, M. and Schulz, S. and Heiss, K. and Müller, A.K. and Matuschewski, K. and Spatz, J.P. and Schwarz, U.S. and Frischknecht, F.
PLoS Pathogens 7 (6): e1002080. 16 June 2011

PMC Biophysics

Geometric constrains for detecting short actin filaments by cryogenic electron tomography.
Kudryashev, M. and Lepper, S. and Baumeister, W. and Cyrklaff, M. and Frischknecht, F.
PMC Biophysics 3 (1): 6. 5 March 2010

Proceedings of the National Academy of Sciences of the United States of America

Clostridium difficile toxin CDT hijacks microtubule organization and reroutes vesicle traffic to increase pathogen adherence.
Schwan, C. and Kruppke, A.S. and Nölke, T. and Schumacher, L. and Koch-Nolte, F. and Kudryashev, M. and Stahlberg, H. and Aktories, K.
Proceedings of the National Academy of Sciences of the United States of America 111 (6): 2313-2318. 11 February 2014

Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography.
Dudkina, N.V. and Kudryashev, M. and Stahlberg, H. and Boekema, E.J.
Proceedings of the National Academy of Sciences of the United States of America 108 (37): 15196-15200. 13 September 2011

Research Square

A weak-labelling and deep learning approach for in-focus object segmentation in 3D widefield microscopy.
Li, R. and Kudryashev, M. and Yakimovich, A.
Research Square : rs.3.rs-2362531/v1. 20 December 2022

Science Advances

Structure of the merozoite surface protein 1 from Plasmodium falciparum.
Dijkman, P.M. and Marzluf, T. and Zhang, Y. and Chang, S.Y.S. and Helm, D. and Lanzer, M. and Bujard, H. and Kudryashev, M.
Science Advances 7 (23): eabg0465. June 2021

Scientific Reports

A weak-labelling and deep learning approach for in-focus object segmentation in 3D widefield microscopy.
Li, R. and Kudryashev, M. and Yakimovich, A.
Scientific Reports 13 (1): 12275. 28 July 2023

Determining the structure of the bacterial voltage-gated sodium channel NaChBac embedded in liposomes by cryo electron tomography and subtomogram averaging.
Chang, S.Y.S. and Dijkman, P.M. and Wiessing, S.A. and Kudryashev, M.
Scientific Reports 13 : 11523. 17 July 2023

Nuclear pore complex components in the malaria parasite Plasmodium berghei.
Kehrer, J. and Kuss, C. and Andres-Pons, A. and Reustle, A. and Dahan, N. and Devos, D. and Kudryashev, M. and Beck, M. and Mair, G.R. and Frischknecht, F.
Scientific Reports 8 (1): 11249. 26 July 2018

Structure

Gentle ions for cryo-FIB milling.
Chu, X. and Kudryashev, M.
Structure 31 (10): 1147-1148. 5 October 2023

The structure of the mouse serotonin 5-HT3 receptor in lipid vesicles.
Kudryashev, M. and Castaño-Díez, D. and Deluz, C. and Hassaine, G. and Grasso, L. and Graf-Meyer, A. and Vogel, H. and Stahlberg, H.
Structure 24 (1): 165-170. 5 January 2016

Structure of the dodecameric Yersinia enterocolitica secretin YscC and its trypsin-resistant core.
Kowal, J. and Chami, M. and Ringler, P. and Müller, S.A. and Kudryashev, M. and Castaño-Díez, D. and Amstutz, M. and Cornelis, G.R. and Stahlberg, H. and Engel, A.
Structure 21 (12): 2152-2161. 3 December 2013

eLife

In situ structural analysis of the Yersinia enterocolitica injectisome.
Kudryashev, M. and Stenta, M. and Schmelz, S. and Amstutz, M. and Wiesand, U. and Castaño-Díez, D. and Degiacomi, M.T. and Münnich, S. and Bleck, C.K. and Kowal, J. and Diepold, A. and Heinz, D.W. and Dal Peraro, M. and Cornelis, G.R. and Stahlberg, H.
eLife 2 : e00792. 30 July 2013