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SMOG 2 and OpenSMOG: extending the limits of structure-based models.
de Oliveira, A.B. and Contessoto, V.G. and Hassan, A. and Byju, S. and Wang, A. and Wang, Y. and Dodero-Rojas, E. and Mohanty, U. and Noel, J.K. and Onuchic, J.N. and Whitford, P.C.
Protein Science 31 (1): 158-172. January 2022


Glycoprotein production for structure analysis with stable, glycosylation mutant CHO cell lines established by fluorescence-activated cell sorting.
Wilke, S. and Krausze, J. and Gossen, M. and Groebe, L. and Jaeger, V. and Gherardi, E. and van den Heuvel, J. and Buessow, K.
Protein Science 19 (6): 1264-1271. June 2010


Crystal structure of Homo sapiens PTD012 reveals a zinc-containing hydrolase fold.
Manjasetty, B.A. and Buessow, K. and Fieber-Erdmann, M. and Roske, Y. and Gobom, J. and Scheich, C. and Goetz, F. and Niesen, F.H. and Heinemann, U.
Protein Science 15 (4): 914-920. 1 April 2006


Structural similarity to bridge sequence space: Finding new families on the bridges.
Shah, P.K. and Aloy, P. and Bork, P. and Russell, R.B.
Protein Science 14 (5): 1305-1314. 1 January 2005


Solution structure of the receptor tyrosine kinase EphB2 SAM domain and identification of two distinct homotypic interaction sites.
Smalla, M. and Schmieder, P. and Kelly, M. and Ter Laak, A. and Krause, G. and Ball, L. and Wahl, M. and Bork, P. and Oschkinat, H.
Protein Science 8 : 1954-1961. 1 October 1999

Trifluoroethanol-induced conformational transitions of proteins: Insights gained from the differences between alpha-lactalbumin and ribonuclease A.
Gast, K. and Zirwer, D. and Mueller-Frohne, M. and Damaschun, G.
Protein Science 8 : 625-634. 1 March 1999


Compactness of the kinetic molten globule of bovine alpha-lactalbumin: a dynamic light scattering study.
Gast, K. and Zirwer, D. and Mueller-Frohne, M. and Damaschun, G.
Protein Science 7 : 2004-2011. 1 September 1998

Hinge bending within the cytokine receptor superfamily revealed by the 2.4 A crystal structure of the extracellular domain of rabbit tissue factor.
Muller, Y.A. and Kelley, R.F. and de Vos, A.M.
Protein Science 7 : 1106-1115. 1 January 1998


Lack of coupling between secondary structure formation and collapse in a model polypeptide the mimics early folding intermediates, the F2 fragment of the Escherichia coli tryptophan-synthase beta chain.
Gast, K. and Chaffotte, A.F. and Zirwer, D. and Guillou, Y. and Mueller-Frohne, M. and Cadieux, C. and Hodges, M. and Damaschun, G. and Goldberg, M.E.
Protein Science 6 : 2578-2588. 1 January 1997

SAM as a protein interaction domain involved in developmental regulation.
Schultz, J. and Ponting, C. and Hofmann, K. and Bork, P.
Protein Science 6 : 249-253. 1 January 1997


The protein phosphatase 2C (PP2C) superfamily: detection of bacterial homologues.
Bork, P. and Brown, N.P. and Hegyi, H. and Schultz, J.
Protein Science 5 : 1421-1425. 1 January 1996

Conformational stability of adrenodoxin mutant proteins.
Burova, T.V. and Beckert, V. and Uhlmann, H. and Ristau, O. and Bernhardt, R. and Pfeil, W.
Protein Science 5 : 1890-1897. 1 January 1996

Self-organizing hierarchic networks for pattern recognition in protein sequence.
Hanke, J. and Beckmann, G. and Bork, P. and Reich, J.
Protein Science 5 : 72-82. 1 January 1996

Individual amino acids in the N-terminal loop region determine the thermostability and unfolding characteristics of bacterial glucanases.
Welfle, K. and Misselwitz, R. and Politz, O. and Borriss, R. and Welfle, H.
Protein Science 5 : 2255-2265. 1 January 1996


Divergent evolution of a beta/alpha-barrel subclass: detection of numerous phosphate-binding sites by motif search.
Bork, P. and Gellerich, J. and Groth, H. and Hooft, R. and Martin, F.
Protein Science 4 : 268-274. 1 January 1995

The SEA module - a new extracellular domain associated with o-glycosylation.
Bork, P. and Patthy, L.
Protein Science 4 (7): 1421-1425. 1 January 1995

Conformational stability of bovine holo and apo adrenodoxin - a scanning calorimetric study.
Burova, T.V. and Bernhardt, R. and Pfeil, W.
Protein Science 4 : 909-916. 1 January 1995

New protein functions in yeast chromosome VIII.
Ouzounis, C. and Bork, P. and Casari, G. and Sander, C.
Protein Science 4 (11): 2424-2428. 1 January 1995


A new family of carbon-nitrogen hydrolases.
Bork, P. and Koonin, E.
Protein Science 3 : 1344-1346. 1 January 1994

Eukaryotic translation elongation factor 1gamma contains a glutathione transferase domain - study of a diverse ancient class of proteins using motif search and structural modelling.
Koonin, E.V. and Mushegian, A.R. and Tatusov, R.L. and Altschul, S.F. and Bryant, S.H. and Bork, P. and Valencia, A.
Protein Science 3 : 2045-2054. 1 January 1994


A trefoil domain in the major rabbit zona-pellucida protein.
Bork, P.
Protein Science 2 : 669-670. 1 January 1993

Fibronectin type III modules in the receptor phosphatase CD45 and tapeworm antigens.
Bork, P. and Doolittle, R.F.
Protein Science 2 : 1185-1187. 1 January 1993

Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase and galactokinase families of sugar kinases.
Bork, P. and Sander, C. and Valencia, A.
Protein Science 2 : 31-40. 1 January 1993

Thermodynamics of apocytochrome b5 unfolding.
Pfeil, W.
Protein Science 2 : 1497-1501. 1 January 1993


Comprehensive sequence analysis of the 182 predicted ORFs of yeast chromosome III.
Bork, P. and Ouzounis, C. and Sander, C. and Scharf, M. and Schneider, R. and Sonnhammer, E.
Protein Science 1 : 1677-1690. 1 January 1992

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