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A systematic approach to decipher crosstalk in the p53 signaling pathway using single cell dynamics.
Konrath, F. and Mittermeier, A. and Cristiano, E. and Wolf, J. and Loewer, A.
PLoS Computational Biology 16 (6): e1007901. 26 June 2020

DeepWAS: multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning.
Arloth, J. and Eraslan, G. and Andlauer, T.F.M. and Martins, J. and Iurato, S. and Kühnel, B. and Waldenberger, M. and Frank, J. and Gold, R. and Hemmer, B. and Luessi, F. and Nischwitz, S. and Paul, F. and Wiendl, H. and Gieger, C. and Heilmann-Heimbach, S. and Kacprowski, T. and Laudes, M. and Meitinger, T. and Peters, A. and Rawal, R. and Strauch, K. and Lucae, S. and Müller-Myhsok, B. and Rietschel, M. and Theis, F.J. and Binder, E.B. and Mueller, N.S.
PLoS Computational Biology 16 (2): e1007616. 3 February 2020


Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.
Giese, W. and Milicic, G. and Schröder, A. and Klipp, E.
PLoS Computational Biology 14 (4): e1006075. 9 April 2018


Dynamics and heterogeneity of brain damage in multiple sclerosis.
Kotelnikova, E. and Kiani, N.A. and Abad, E. and Martinez-Lapiscina, E.H. and Andorra, M. and Zubizarreta, I. and Pulido-Valdeolivas, I. and Pertsovskaya, I. and Alexopoulos, L.G. and Olsson, T. and Martin, R. and Paul, F. and Tegnér, J. and Garcia-Ojalvo, J. and Villoslada, P.
PLoS Computational Biology 13 (10): e1005757. 26 October 2017


Feedback, mass conservation and reaction kinetics impact the robustness of cellular oscillations.
Baum, K. and Politi, A.Z. and Kofahl, B. and Steuer, R. and Wolf, J.
PLoS Computational Biology 12 (12): e1005298. 27 December 2016

SMOG 2: A versatile software package for generating structure-based models.
Noel, J.K. and Levi, M. and Raghunathan, M. and Lammert, H. and Hayes, R.L. and Onuchic, J.N. and Whitford, P.C.
PLoS Computational Biology 12 (3): e1004794. 10 March 2016


Changes in postural syntax characterize sensory modulation and natural variation of C. elegans locomotion.
Schwarz, R.F. and Branicky, R. and Grundy, L.J. and Schafer, W.R. and Brown, A.E.X.
PLoS Computational Biology 11 (8): e1004322. 21 August 2015

Spatio-temporal model of endogenous ROS and raft-dependent WNT/β-catenin signaling driving cell fate commitment in human neural progenitor cells.
Haack, F. and Lemcke, H. and Ewald, R. and Rharass, T. and Uhrmacher, A.M.
PLoS Computational Biology 11 (3): e1004106. 20 March 2015


Exploring the miRNA regulatory network using evolutionary correlations.
Obermayer, B. and Levine, E.
PLoS Computational Biology 10 (10): e1003860. 9 October 2014

Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen.
Suratanee, A. and Schaefer, M.H. and Betts, M.J. and Soons, Z. and Mannsperger, H. and Harder, N. and Oswald, M. and Gipp, M. and Ramminger, E. and Marcus, G. and Männer, R. and Rohr, K. and Wanker, E. and Russell, R.B. and Andrade-Navarro, M.A. and Eils, R. and König, R.
PLoS Computational Biology 10 (9): e1003814. 25 September 2014

Comments on "Human dominant disease genes are enriched in paralogs originating from whole genome duplication".
Chen, W.H. and Zhao, X.M. and van Noort, V. and Bork, P.
PLoS Computational Biology 10 (7): e1003758. 31 July 2014

Phylogenetic quantification of intra-tumour heterogeneity.
Schwarz, R.F. and Trinh, A. and Sipos, B. and Brenton, J.D. and Goldman, N. and Markowetz, F.
PLoS Computational Biology 10 (4): e1003535. 17 April 2014


Distribution of the fittest individuals and the rate of Muller's ratchet in a model with overlapping generations.
Metzger, J.J. and Eule, S.
PLoS Computational Biology 9 (11): e1003303. November 2013

Human monogenic disease genes have frequently functionally redundant paralogs.
Chen, W.H. and Zhao, X.M. and van Noort, V. and Bork, P.
PLoS Computational Biology 9 (5): e1003073. May 2013

Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clock.
Hertel, S. and Brettschneider, C. and Axmann, I.M.
PLoS Computational Biology 9 (3): e1002966. 14 March 2013

Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.
Schaefer, M.H. and Lopes, T.J.S. and Mah, N. and Shoemaker, J.E. and Matsuoka, Y. and Fontaine, J.F. and Louis-Jeune, C. and Eisfeld, A.J. and Neumann, G. and Perez-Iratxeta, C. and Kawaoka, Y. and Kitano, H. and Andrade-Navarro, M.A.
PLoS Computational Biology 9 (1): e1002860. 3 January 2013


Prediction of drug combinations by integrating molecular and pharmacological data.
Zhao, X.M. and Iskar, M. and Zeller, G. and Kuhn, M. and van Noort, V. and Bork, P.
PLoS Computational Biology 7 (12): e1002323. 29 December 2011

Identifying single copy orthologs in Metazoa.
Creevey, C.J. and Muller, J. and Doerks, T. and Thompson, J.D. and Arendt, D. and Bork, P.
PLoS Computational Biology 7 (12): e1002269. 1 December 2011

Automatic annotation of spatial expression patterns via sparse Bayesian factor models.
Pruteanu-Malinici, I. and Mace, D.L. and Ohler, U.
PLoS Computational Biology 7 (7): e1002098. July 2011


Modeling the evolution of regulatory elements by simultaneous detection and alignment with phylogenetic pair HMMs.
Majoros, W.H. and Ohler, U.
PLoS Computational Biology 6 (12): e1001037. 16 December 2010

Drug-induced regulation of target expression.
Iskar, M. and Campillos, M. and Kuhn, M. and Jensen, L.J. and van Noort, V. and Bork, P.
PLoS Computational Biology 6 (9): e1000925. 9 September 2010

Calcium signals driven by single channel noise.
Skupin, A. and Kettenmann, H. and Falcke, M.
PLoS Computational Biology 6 (8): e1000870. 5 August 2010

Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq.
Xu, A.G. and He, L. and Li, Z. and Xu, Y. and Li, M. and Fu, X. and Yan, Z. and Yuan, Y. and Menzel, C. and Li, N. and Somel, M. and Hu, H. and Chen, W. and Paeaebo, S. and Khaitovich, P.
PLoS Computational Biology 6 (7): e1000843. 1 July 2010

TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures.
Wiebe, N.J.P. and Meyer, I.M.
PLoS Computational Biology 6 (6): e1000823. 24 June 2010

New insights into the genetic control of gene expression using a Bayesian multi-tissue approach.
Petretto, E. and Bottolo, L. and Langley, S.R. and Heinig, M. and McDermott-Roe, C. and Sarwar, R. and Pravenec, M. and Huebner, N. and Aitman, T.J. and Cook, S.A. and Richardson, S.
PLoS Computational Biology 6 (4): e1000737. 8 April 2010


Tipping the balance: robustness of tip cell selection, migration and fusion in angiogenesis.
Bentley, K. and Mariggi, G. and Gerhardt, H. and Bates, P.A.
PLoS Computational Biology 5 (10): e1000549. 30 October 2009

Detection of alpha-rod protein repeats using a neural network and application to huntingtin.
Palidwor, G.A. and Shcherbinin, S. and Huska, M.R. and Rasko, T. and Stelzl, U. and Arumughan, A. and Foulle, R. and Porras, P. and Sanchez-Pulido, L. and Wanker, E.E. and Andrade-Navarro, M.A.
PLoS Computational Biology 5 (3): e1000304. 13 March 2009


Computational lipidology: predicting lipoprotein density profiles in human blood plasma.
Huebner, K. and Schwager, T. and Winkler, K. and Reich, J.G. and Holzhuetter, H.G.
PLoS Computational Biology 4 (5): e1000079. 23 May 2008

Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events.
Holste, D. and Ohler, U.
PLoS Computational Biology 4 (1): e21. 25 January 2008


SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework.
Meyer, I.M. and Miklos, I.
PLoS Computational Biology 3 (8): e149. 10 August 2007

Enhancer responses to similarly distributed antagonistic gradients in development.
Zinzen, R.P. and Papatsenko, D.
PLoS Computational Biology 3 (5): e84. 11 May 2007


Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes.
Suyama, M. and Harrington, E. and Bork, P. and Torrents, D.
PLoS Computational Biology 2 (6): e76 (627-636). 30 June 2006


Recognition of unknown conserved alternatively spliced exons.
Ohler, U. and Shomron, N. and Burge, C.B.
PLoS Computational Biology 1 (2): 113-122. July 2005

Extraction of transcript diversity from scientific literature.
Shah, P.K. and Jensen, L.J. and Boue, S. and Bork, P.
PLoS Computational Biology 1 (1): e10. 24 June 2005

microRNA target predictions across seven Drosophila species and comparison to mammalian targets.
Gruen, D. and Wang, Y.L. and Langenberger, D. and Gunsalus, K.C. and Rajewsky, N.
PLoS Computational Biology 1 (1): e13. June 2005

This list was generated on Tue Nov 24 02:28:50 2020 CET.
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