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2017

JACUSA: site-specific identification of RNA editing events from replicate sequencing data.
Piechotta, M. and Wyler, E. and Ohler, U. and Landthaler, M. and Dieterich, C.
BMC Bioinformatics 18 (1): 7. 3 January 2017

2015

2D and 3D similarity landscape analysis identifies PARP as a novel off-target for the drug Vatalanib.
Gohlke, B.O. and Overkamp, T. and Richter, A. and Richter, A. and Daniel, P.T. and Gillissen, B. and Preissner, R.
BMC Bioinformatics 16 (1): 308. 24 September 2015

histoneHMM: Differential analysis of histone modifications with broad genomic footprints.
Heinig, M. and Colomé-Tatché, M. and Taudt, A. and Rintisch, C. and Schafer, S. and Pravenec, M. and Hubner, N. and Vingron, M. and Johannes, F.
BMC Bioinformatics 16 : 60. 22 February 2015

2013

A novel approach for protein subcellular location prediction using amino acid exposure.
Mer, A.S. and Andrade-Navarro, M.A.
BMC Bioinformatics 14 (1): 342. 28 November 2013

CELDA - an ontology for the comprehensive representation of cells in complex systems.
Seltmann, S. and Stachelscheid, H. and Damaschun, A. and Jansen, L. and Lekschas, F. and Fontaine, J.F. and Nguyen-Dobinsky, T.N. and Leser, U. and Kurtz, A.
BMC Bioinformatics 14 : 228. 17 July 2013

Using cited references to improve the retrieval of related biomedical documents.
Ortuno, F.M. and Rojas, I. and Andrade-Navarro, M.A. and Fontaine, J.F.
BMC Bioinformatics 14 : 113. 27 March 2013

An optimized algorithm for detecting and annotating regional differential methylation.
Li, S. and Garrett-Bakelman, F.E. and Akalin, A. and Zumbo, P. and Levine, R. and To, B.L. and Lewis, I.D. and Brown, A.L. and D'Andrea, R.J. and Melnick, A. and Mason, C.E.
BMC Bioinformatics 14 (Suppl 5): S10. 2013

2011

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.
Barbosa-Silva, A. and Fontaine, J.F. and Donnard, E.R. and Stussi, F. and Ortega, J.M. and Andrade-Navarro, M.A.
BMC Bioinformatics 12 (1): 435. 9 November 2011

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger, M. and Vazquez, M. and Leitner, F. and Salgado, D. and Chatr-Aryamontri, A. and Winter, A. and Perfetto, L. and Briganti, L. and Licata, L. and Iannuccelli, M. and Castagnoli, L. and Cesareni, G. and Tyers, M. and Schneider, G. and Rinaldi, F. and Leaman, R. and Gonzalez, G. and Matos, S. and Kim, S. and Wilbur, W.J. and Rocha, L. and Shatkay, H. and Tendulkar, A.V. and Agarwal, S. and Liu, F. and Wang, X. and Rak, R. and Noto, K. and Elkan, C. and Lu, Z. and Dogan, R.I. and Fontaine, J.F. and Andrade-Navarro, M.A. and Valencia, A.
BMC Bioinformatics 12 (Suppl 8): S3. 3 October 2011

Domain architecture conservation in orthologs.
Forslund, K. and Pekkari, I. and Sonnhammer, E.L.L.
BMC Bioinformatics 12 : 326. 5 August 2011

GPCR-SSFE: a comprehensive database of G-protein-coupled receptor template predictions and homology models.
Worth, C.L. and Kreuchwig, A. and Kleinau, G. and Krause, G.
BMC Bioinformatics 12 : 185. 23 May 2011

2010

LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships.
Barbosa-Silva, A. and Soldatos, T.G. and Magalhaes, I.L. and Pavlopoulos, G.A. and Fontaine, J.F. and Andrade-Navarro, M.A. and Schneider, R. and Ortega, J.M.
BMC Bioinformatics 11 (1): 70. 1 February 2010

Translog, a web browser for studying the expression divergence of homologous genes.
Dong, X. and Akalin, A. and Sharma, Y. and Lenhard, B.
BMC Bioinformatics 11 (Suppl 1): S59. 18 January 2010

2007

Transcriptional regulation at a glance.
Sperling, S.
BMC Bioinformatics 8 (Suppl 6): S2. 27 September 2007

Integrated network reconstruction, visualization and analysis using YANAsquare.
Schwarz, R. and Liang, C. and Kaleta, C. and Kuehnel, M. and Hoffmann, E. and Kuznetsov, S. and Hecker, M. and Griffiths, G. and Schuster, S. and Dandekar, T.
BMC Bioinformatics 8 : 313. 28 August 2007

Genome bioinformatic analysis of nonsynonymous SNPs.
Burke, D.F. and Worth, C.L. and Priego, E.M. and Cheng, T. and Smink, L.J. and Todd, J.A. and Blundell, T.L.
BMC Bioinformatics 8 : 301. 20 August 2007

Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts.
Toedling, J. and Skylar, O. and Krueger, T. and Fischer, J.J. and Sperling, S. and Huber, W.
BMC Bioinformatics 8 : 221. 26 June 2007

2006

Optimized mixed Markov models for motif identification.
Huang, W. and Umbach, D.M. and Ohler, U. and Li, L.
BMC Bioinformatics 7 : 279. 2 June 2006

2005

Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process.
Wolski, W.E. and Lalowski, M. and Martus, P. and Herwig, R. and Giavalisco, P. and Gobom, J. and Sickmann, A. and Lehrach, H. and Reinert, K.
BMC Bioinformatics 6 : 285. 30 November 2005

A linear memory algorithm for Baum-Welch training.
Miklos, I. and Meyer, I.M.
BMC Bioinformatics 6 : 231. 19 September 2005

Chromosomal clustering of a human transcriptome reveals regulatory background.
Vogel, J.H. and von Heydebreck, A. and Purmann, A. and Sperling, S.
BMC Bioinformatics 6 : 230. 19 September 2005

Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants.
Wolski, W.E. and Lalowski, M. and Jungblut, P. and Reinert, K.
BMC Bioinformatics 6 : 203. 15 August 2005

DCD - a novel plant specific domain in proteins involved in development and programmed cell death.
Tenhaken, R. and Doerks, T. and Bork, P.
BMC Bioinformatics 6 : 169. 11 July 2005

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.
Schwarz, R. and Musch, P. and von Kamp, A. and Engels, B. and Schirmer, H. and Schuster, S. and Dandekar, T.
BMC Bioinformatics 6 : 135. 1 June 2005

CGHPRO - a comprehensive data analysis tool for array CGH.
Chen, W. and Erdogan, F. and Ropers, H.H. and Lenzner, S. and Ullmann, R.
BMC Bioinformatics 6 : 85. 2005

Ab initio identification of putative human transcription factor binding sites by comparative genomics.
Cora, D. and Herrmann, C. and Dieterich, C. and Di Cunto, F. and Provero, P. and Caselle, M.
BMC Bioinformatics 6 2005

2004

d-matrix - database exploration, visualization and analysis.
Seelow, D. and Galli, R. and Mebus, S. and Sperling, H.P. and Lehrach, H. and Sperling, S.
BMC Bioinformatics 5 : 168. 28 October 2004

PASBio: predicate-argument structures for event extraction in molecular biology.
Wattarujeekrit, T. and Shah, P.K. and Collier, N.
BMC Bioinformatics 5 : 155. 19 October 2004

2003

The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.
Ciccarelli, F.D. and Izaurralde, E. and Bork, P.
BMC Bioinformatics 4 : 64. 19 December 2003

Conservation of regulatory elements between two species of Drosophila.
Emberly, E. and Rajewsky, N. and Siggia, E.D.
BMC Bioinformatics 4 : 57. 20 November 2003

Information extraction from full text scientific articles: Where are the keywords?
Shah, P. and Perez-Iratxeta, C. and Bork, P. and Andrade, M.A.
BMC Bioinformatics 4 (1): 20. 29 May 2003

2002

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
Rajewsky, N. and Vergassola, M. and Gaul, U. and Siggia, E.D.
BMC Bioinformatics 3 : 30. 24 October 2002

This list was generated on Wed Oct 17 02:30:26 2018 CEST.
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