2024

PDGFRA is a conserved HAND2 effector during early cardiac development.
Xu, Y., Gehlot, R. ORCID: https://orcid.org/0009-0008-8709-2337, Capon, S.J. ORCID: https://orcid.org/0000-0003-3949-4696, Albu, M. ORCID: https://orcid.org/0009-0004-9409-8762, Gretz, J., Bloomekatz, J. ORCID: https://orcid.org/0000-0001-5816-2756, Mattonet, K., Vucicevic, D. ORCID: https://orcid.org/0000-0002-1162-6709, Talyan, S., Kikhi, K. ORCID: https://orcid.org/0000-0001-5672-3791, Günther, S. ORCID: https://orcid.org/0000-0002-5594-4549, Looso, M. ORCID: https://orcid.org/0000-0003-1495-9530, Firulli, B.A., Sanda, M., Firulli, A.B., Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340, Yelon, D. ORCID: https://orcid.org/0000-0003-3523-4053 and Stainier, D.Y.R. ORCID: https://orcid.org/0000-0002-0382-0026
Nature Cardiovascular Research 3 (12): 1531-1548. December 2024

2022

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Baranasic, D. ORCID: https://orcid.org/0000-0001-5948-0932, Hörtenhuber, M. ORCID: https://orcid.org/0000-0002-5599-5565, Balwierz, P.J. ORCID: https://orcid.org/0000-0002-1548-4605, Zehnder, T. ORCID: https://orcid.org/0000-0002-4127-2673, Mukarram, A.K., Nepal, C., Várnai, C. ORCID: https://orcid.org/0000-0003-0048-9507, Hadzhiev, Y. ORCID: https://orcid.org/0000-0002-1134-4904, Jimenez-Gonzalez, A. ORCID: https://orcid.org/0000-0001-7702-6135, Li, N. ORCID: https://orcid.org/0000-0002-8919-2357, Wragg, J., D'Orazio, F.M., Relic, D. ORCID: https://orcid.org/0000-0001-6237-3345, Pachkov, M. ORCID: https://orcid.org/0000-0001-7616-6435, Díaz, N. ORCID: https://orcid.org/0000-0002-0319-3448, Hernández-Rodríguez, B. ORCID: https://orcid.org/0000-0002-5118-8715, Chen, Z. ORCID: https://orcid.org/0000-0002-8376-7367, Stoiber, M., Dong, M. ORCID: https://orcid.org/0000-0003-4084-3099, Stevens, I. ORCID: https://orcid.org/0000-0003-3823-1499, Ross, S.E., Eagle, A., Martin, R., Obasaju, O. ORCID: https://orcid.org/0000-0001-5952-3103, Rastegar, S. ORCID: https://orcid.org/0000-0003-4411-5646, McGarvey, A.C. ORCID: https://orcid.org/0000-0003-3838-1139, Kopp, W. ORCID: https://orcid.org/0000-0003-0376-0032, Chambers, E. ORCID: https://orcid.org/0000-0003-1252-8059, Wang, D. ORCID: https://orcid.org/0000-0003-0068-1005, Kim, H.R., Acemel, R.D. ORCID: https://orcid.org/0000-0003-4120-0140, Naranjo, S. ORCID: https://orcid.org/0000-0002-4529-3332, Łapiński, M. ORCID: https://orcid.org/0000-0003-4892-976X, Chong, V. ORCID: https://orcid.org/0000-0002-2547-3694, Mathavan, S., Peers, B., Sauka-Spengler, T. ORCID: https://orcid.org/0000-0001-9289-0263, Vingron, M. ORCID: https://orcid.org/0000-0002-1765-4241, Carninci, P. ORCID: https://orcid.org/0000-0001-7202-7243, Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116, Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340, Burgess, S.M. ORCID: https://orcid.org/0000-0003-1147-0596, Winata, C. ORCID: https://orcid.org/0000-0002-7718-5248, van Eeden, F. ORCID: https://orcid.org/0000-0003-3483-8269, Vaquerizas, J.M. ORCID: https://orcid.org/0000-0002-6583-6541, Gómez-Skarmeta, J.L. ORCID: https://orcid.org/0000-0001-5125-4332, Onichtchouk, D. ORCID: https://orcid.org/0000-0001-6497-1445, Brown, B.J. ORCID: https://orcid.org/0000-0002-5898-5848, Bogdanovic, O. ORCID: https://orcid.org/0000-0001-5680-0056, van Nimwegen, E. ORCID: https://orcid.org/0000-0001-6338-1312, Westerfield, M. ORCID: https://orcid.org/0000-0003-1187-7839, Wardle, F.C ORCID: https://orcid.org/0000-0001-5444-1889, Daub, C.O. ORCID: https://orcid.org/0000-0002-3295-8729, Lenhard, B. ORCID: https://orcid.org/0000-0002-1114-1509 and Müller, F. ORCID: https://orcid.org/0000-0002-0996-774X
Nature Genetics 54 (7): 1037-1050. July 2022

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos.
McGarvey, A.C. ORCID: https://orcid.org/0000-0003-3838-1139, Kopp, W. ORCID: https://orcid.org/0000-0003-0376-0032, Vučićević, D. ORCID: https://orcid.org/0000-0002-1162-6709, Mattonet, K. ORCID: https://orcid.org/0000-0002-9705-8086, Kempfer, R. ORCID: https://orcid.org/0000-0002-8588-8576, Hirsekorn, A., Bilić, I. ORCID: https://orcid.org/0000-0002-2730-1634, Gil, M. ORCID: https://orcid.org/0000-0002-3885-7806, Trinks, A. ORCID: https://orcid.org/0000-0001-9983-1506, Merks, A.M. ORCID: https://orcid.org/0000-0001-5677-7204, Panáková, D. ORCID: https://orcid.org/0000-0002-8739-6225, Pombo, A. ORCID: https://orcid.org/0000-0002-7493-6288, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117, Junker, J.P. ORCID: https://orcid.org/0000-0002-2826-8290, Stainier, D.Y.R. ORCID: https://orcid.org/0000-0002-0382-0026, Garfield, D. ORCID: https://orcid.org/0000-0002-8790-797X, Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116 and Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340
Cell Genomics 2 (1): 100083. 13 January 2022

2018

Determinants of promoter and enhancer transcription directionality in metazoans.
Ibrahim, M.M. ORCID: https://orcid.org/0000-0001-6954-5314, Karabacak, A. ORCID: https://orcid.org/0000-0002-4740-7938, Glahs, A. ORCID: https://orcid.org/0000-0003-0721-3757, Kolundzic, E. ORCID: https://orcid.org/0000-0002-7811-3174, Hirsekorn, A., Carda, A., Tursun, B. ORCID: https://orcid.org/0000-0001-7293-8629, Zinzen, R.P. ORCID: https://orcid.org/0000-0002-8638-5102, Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340 and Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116
Nature Communications 9 (1): 4472. 26 October 2018

FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells.
Kolundzic, E. ORCID: https://orcid.org/0000-0002-7811-3174, Ofenbauer, A. ORCID: https://orcid.org/0000-0003-0379-9105, Bulut, S.I., Uyar, B. ORCID: https://orcid.org/0000-0002-3170-4890, Baytek, G. ORCID: https://orcid.org/0000-0001-9731-9461, Sommermeier, A., Seelk, S. ORCID: https://orcid.org/0000-0002-3525-8859, He, M., Hirsekorn, A., Vucicevic, D. ORCID: https://orcid.org/0000-0002-1162-6709, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117, Diecke, S. ORCID: https://orcid.org/0000-0002-5219-5992, Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340 and Tursun, B. ORCID: https://orcid.org/0000-0001-7293-8629
Developmental Cell 46 (5): 611-626. 10 September 2018

Redundant regulation.
Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340 and Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116
Nature Ecology & Evolution 2 (3): 418-419. March 2018

2015

Human promoters are intrinsically directional.
Duttke, S.H.C., Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340, Ibrahim, M.M. ORCID: https://orcid.org/0000-0001-6954-5314, Glass, C.K., Corcoran, D.L., Benner, C., Heinz, S., Kadonaga, J.T. and Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116
Molecular Cell 57 (4): 674-684. 19 February 2015

JAMM: a peak finder for joint analysis of NGS replicates.
Ibrahim, M.M. ORCID: https://orcid.org/0000-0001-6954-5314, Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340 and Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116
Bioinformatics 31 (1): 48-55. 1 January 2015

2013

NextGen speaks.
Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340
Science 340 (6128): 29. April 2013

2012

The transcriptional landscape of hematopoietic stem cell ontogeny.
McKinney-Freeman, S., Cahan, P., Li, H., Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340, Huang, H.T., Curran, M., Loewer, S., Naveiras, O., Kathrein, K.L., Konantz, M., Langdon, E.M., Lengerke, C., Zon, L.I., Collins, J.J. and Daley, G.Q.
Cell Stem Cell 11 (5): 701-714. 2 November 2012

Small molecule screening in zebrafish: swimming in potential drug therapies.
Tamplin, O.J., White, R.M., Jing, L., Kaufman, C.K., Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340, Li, P., Taylor, A.M. and Zon, L.I.
Wiley Interdisciplinary Reviews: Developmental Biology 1 (3): 459-468. May 2012

2011

The ERGonomics of hematopoietic stem cell self-renewal.
Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340 and Zon, L.I.
Genes & Development 25 (4): 289-293. 15 February 2011

2006

A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional.
Tardiff, D.F., Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340 and Rosbash, M.
Molecular Cell 24 (6): 917-929. 28 December 2006

In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants.
Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340, Tardiff, D.F., Kadener, S. and Rosbash, M.
Genes & Development 20 (15): 2055-2066. 1 August 2006

2005

Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast.
Lacadie, S.A. ORCID: https://orcid.org/0000-0002-0893-5340 and Rosbash, M.
Molecular Cell 19 (1): 65-75. 1 July 2005

2004

Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes.
Abruzzi, K.C., Lacadie, S. ORCID: https://orcid.org/0000-0002-0893-5340 and Rosbash, M.
EMBO Journal 23 (13): 2620-2631. 7 July 2004