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Synthetic genetic circuits to uncover the OCT4 trajectories of successful reprogramming of human fibroblasts.
Ilia, K. and Shakiba, N. and Bingham, T. and Jones, R.D. and Kaminski, M.M. and Aravera, E. and Bruno, S. and Palacios, S. and Weiss, R. and Collins, J.J. and Del Vecchio, D. and Schlaeger, T.M.
Science Advances 9 (48): eadg8495. December 2023

HNF1B alters an evolutionarily conserved nephrogenic program of target genes.
Grand, K. and Stoltz, M. and Rizzo, L. and Röck, R. and Kaminski, M.M. and Salinas, G. and Getwan, M. and Naert, T. and Pichler, R. and Lienkamp, S.S.
Journal of the American Society of Nephrology 34 (3): 412-432. March 2023


Tuning the 3D microenvironment of reprogrammed tubule cells enhances biomimetic modeling of polycystic kidney disease.
Pichler, R. and Rizzo, L. and Tröndle, K. and Bühler, M. and Brucker, H. and Müller, A.L. and Grand, K. and Farè, S. and Viau, A. and Kaminski, M.M. and Kuehn, E.W. and Koch, F. and Zimmermann, S. and Koltay, P. and Lienkamp, S.S.
Biomaterials 291 : 121910. December 2022

Nanozyme-catalysed CRISPR assay for preamplification-free detection of non-coding RNAs.
Broto, M. and Kaminski, M.M. and Adrianus, C. and Kim, N. and Greensmith, R. and Dissanayake-Perera, S. and Schubert, A.J. and Tan, X. and Kim, H. and Dighe, A.S. and Collins, J.J. and Stevens, M.M.
Nature Nanotechnology 17 (10): 1120-1126. October 2022


Deep learning is widely applicable to phenotyping embryonic development and disease.
Naert, T. and Çiçek, Ö. and Ogar, P. and Bürgi, M. and Shaidani, N.I. and Kaminski, M.M. and Xu, Y. and Grand, K. and Vujanovic, M. and Prata, D. and Hildebrandt, F. and Brox, T. and Ronneberger, O. and Voigt, F.F. and Helmchen, F. and Loffing, J. and Horb, M.E. and Willsey, H.R. and Lienkamp, S.S.
Development 148 (21): dev199664. 1 November 2021

CRISPR-based diagnostics.
Kaminski, M.M. and Abudayyeh, O.O. and Gootenberg, J.S. and Zhang, F. and Collins, J.J.
Nature Biomedical Engineering 5 (7): 643-656. July 2021

Mutations in transcription factor CP2-like 1 may cause a novel syndrome with distal renal tubulopathy in humans.
Klämbt, V. and Werth, M. and Onuchic-Whitford, A.C. and Getwan, M. and Kitzler, T.M. and Buerger, F. and Mao, Y. and Deutsch, K. and Mann, N. and Majmundar, A.J. and Kaminski, M.M. and Shen, Tian and Schmidt-Ott, K.M. and Shalaby, M. and El Desoky, S. and Kari, J.A. and Shril, S. and Lienkamp, S.S. and Barasch, J. and Hildebrandt, F.
Nephrology Dialysis Transplantation 36 (2): 237-246. February 2021


A CRISPR-based assay for the detection of opportunistic infections post-transplantation and for the monitoring of transplant rejection.
Kaminski, M.M. and Alcantar, M.A. and Lape, I.T. and Greensmith, R. and Huske, A.C. and Valeri, J.A. and Marty, F.M. and Klämbt, V. and Azzi, J. and Akalin, E. and Riella, L.V. and Collins, J.J.
Nature Biomedical Engineering 4 (6): 601-609. June 2020


Impact of diabetic stress conditions on renal cell metabolome.
Lagies, S. and Pichler, R. and Bork, T. and Kaminski, M.M. and Troendle, K. and Zimmermann, S. and Huber, T.B. and Walz, G. and Lienkamp, S.S. and Kammerer, B.
Cells 8 (10): 1141. 24 September 2019

Fabrication of kidney proximal tubule grafts using biofunctionalized electrospun polymer scaffolds.
Jansen, K. and Castilho, M. and Aarts, S. and Kaminski, M.M. and Lienkamp, S.S. and Pichler, R. and Malda, J. and Vermonden, T. and Jansen, J. and Masereeuw, R.
Macromolecular Bioscience 19 (2): e1800412. February 2019


Metabolic characterization of directly reprogrammed renal tubular epithelial cells (iRECs).
Lagies, S. and Pichler, R. and Kaminski, M.M. and Schlimpert, M. and Walz, G. and Lienkamp, S.S. and Kammerer, B.
Scientific Reports 8 (1): 3878. 1 March 2018


A dominant mutation in nuclear receptor interacting protein 1 causes urinary tract malformations via dysregulation of retinoic acid signaling.
Vivante, A. and Mann, N. and Yonath, H. and Weiss, A.C. and Getwan, M. and Kaminski, M.M. and Bohnenpoll, T. and Teyssier, C. and Chen, J. and Shril, S. and van der Ven, A.T. and Ityel, H. and Schmidt, J.M. and Widmeier, E. and Bauer, S.B. and Sanna-Cherchi, S. and Gharavi, A.G. and Lu, W. and Magen, D. and Shukrun, R. and Lifton, R.P. and Tasic, V. and Stanescu, H.C. and Cavaillès, V. and Kleta, R. and Anikster, Y. and Dekel, B. and Kispert, A. and Lienkamp, S.S. and Hildebrandt, F.
Journal of the American Society of Nephrology 28 (8): 2364-2376. August 2017

Engineering kidney cells: reprogramming and directed differentiation to renal tissues.
Kaminski, M.M. and Tosic, J. and Pichler, R. and Arnold, S.J. and Lienkamp, S.S.
Cell and Tissue Research 369 (1): 185-197. July 2017


Direct reprogramming of fibroblasts into renal tubular epithelial cells by defined transcription factors.
Kaminski, M.M. and Tosic, J. and Kresbach, C. and Engel, H. and Klockenbusch, J. and Müller, A.L. and Pichler, R. and Grahammer, F. and Kretz, O. and Huber, T.B. and Walz, G. and Arnold, S.J. and Lienkamp, S.S.
Nature Cell Biology 18 (12): 1269-1280. December 2016


Mutations in TBX18 cause dominant urinary tract malformations via transcriptional dysregulation of ureter development.
Vivante, Asaf and Kleppa, M.J. and Schulz, J. and Kohl, S. and Sharma, A. and Chen, J. and Shril, S. and Hwang, D.Y. and Weiss, A.C. and Kaminski, M.M. and Shukrun, R. and Kemper, M.J. and Lehnhardt, A. and Beetz, R. and Sanna-Cherchi, S. and Verbitsky, M. and Gharavi, A.G. and Stuart, H.M. and Feather, S.A. and Goodship, J.A. and Goodship, T.H.J. and Woolf, A.S. and Westra, S.J. and Doody, D.P. and Bauer, S.B. and Lee, R.S. and Adam, R.M. and Lu, W. and Reutter, H.M. and Kehinde, E.O. and Mancini, E.J. and Lifton, R.P. and Tasic, V. and Lienkamp, S.S. and Jüppner, H. and Kispert, A. and Hildebrandt, F.
American Journal of Human Genetics 97 (2): 291-301. 6 August 2015


Pandemic 2009 H1N1 influenza A virus carrying a Q136K mutation in the neuraminidase gene is resistant to zanamivir but exhibits reduced fitness in the guinea pig transmission model.
Kaminski, M.M. and Ohnemus, A. and Staeheli, P. and Rubbenstroth, D.
Journal of Virology 87 (3): 1912-1915. February 2013


Plasmacytoid dendritic cells and Toll-like receptor 7-dependent signalling promote efficient protection of mice against highly virulent influenza A virus.
Kaminski, M.M. and Ohnemus, A. and Cornitescu, M. and Staeheli, P.
Journal of General Virology 93 (Pt 3): 555-559. March 2012

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