2023
Single-cell profiling and zebrafish avatars reveal LGALS1 as immunomodulating target in glioblastoma.
Finotto, L. and Cole, B. and Giese, W. and Baumann, E. and Claeys, A. and Vanmechelen, M. and Decraene, B. and Derweduwe, M. and Dubroja Lakic, N. and Shankar, G. and Nagathihalli Kantharaju, M. and Albrecht, J.P. and Geudens, I. and Stanchi, F. and Ligon, K.L. and Boeckx, B. and Lambrechts, D. and Harrington, K. and Van Den Bosch, L. and De Vleeschouwer, S. and De Smet, F. and Gerhardt, H.
EMBO Molecular Medicine 15
(11): e18144.
8 November 2023
Modelling viral encephalitis caused by herpes simplex virus 1 infection in cerebral organoids.
Rybak-Wolf, A. and Wyler, E. and Pentimalli, T.M. and Legnini, I. and Oliveras Martinez, A. and Glažar, P. and Loewa, A. and Kim, S.J. and Kaufer, B.B. and Woehler, A. and Landthaler, M. and Rajewsky, N.
Nature Microbiology 8
(7): 1252-1266.
July 2023
Machine learning-based ozone and PM2.5 forecasting: application to multiple AQS sites in the Pacific Northwest.
Fan, K. and Dhammapala, R. and Harrington, K. and Lamb, B. and Lee, Y.
Frontiers in Big Data 6
: 1124148.
24 February 2023
2022
RS-FISH: precise, interactive, fast, and scalable FISH spot detection.
Bahry, E. and Breimann, L. and Zouinkhi, M. and Epstein, L. and Kolyvanov, K. and Mamrak, N. and King, B. and Long, Xi and Harrington, K.I.S. and Lionnet, T. and Preibisch, S.
Nature Methods 19
(12): 1563-1567.
December 2022
PyZebraScope: an open-source platform for brain-wide neural activity imaging in zebrafish.
Barbara, R. and Nagathihalli Kantharaju, M. and Haruvi, R. and Harrington, K. and Kawashima, T.
Frontiers in Cell and Developmental Biology 10
: 875044.
19 May 2022
PyZebraScope: an open-source platform for brain-wide neural activity imaging in zebrafish.
Barbara, R. and Nagathihalli Kantharaju, M. and Haruvi, R. and Harrington, K. and Kawashima, T.
bioRxiv
: bioRxiv.
15 February 2022
Development of a machine learning approach for local-scale ozone forecasting: application to Kennewick, WA.
Fan, K. and Dhammapala, R. and Harrington, K. and Lamastro, R. and Lamb, B. and Lee, Y.
Frontiers in Big Data 5
: 781309.
10 February 2022
LABKIT: labeling and segmentation toolkit for big image data.
Arzt, M. and Deschamps, J. and Schmied, C. and Pietzsch, T. and Schmidt, D. and Tomancak, P. and Haase, R. and Jug, F.
Frontiers in Computer Science 4
: 777728.
10 February 2022
Can fractal dimensions objectivize gastropod shell morphometrics? A case study from Lake Lugu (SW China).
Wiese, R. and Harrington, K. and Hartmann, K. and Hethke, M. and Rintelen, T. and Zhang, H. and Zhang, L.J. and Riedel, F.
Ecology and Evolution 12
(3): e8622.
February 2022
Mathematical and bioinformatic tools for cell tracking.
Hirsch, P. and Epstein, L. and Guignard, L.
In:
Cell Movement in Health and Disease.
Academic Press, London, 341-361.
ISBN 978-0-323-90195-6
2022
2021
RS-FISH: Precise, interactive, fast, and scalable FISH spot detection.
Bahry, E. and Breimann, L. and Zouinkhi, M. and Epstein, L. and Kolyvanov, K. and Long, X. and Harrington, K.I.S. and Lionnet, T. and Preibisch, S.
bioRxiv
: 2021.03.09.434205v2.
18 October 2021
Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum.
Epstein, L. and Dubois, Z. and Smith, J. and Lee, Y. and Harrington, K.
Biosystems 208
: 104483.
October 2021
SNT: a unifying toolbox for quantification of neuronal anatomy.
Arshadi, C. and Günther, U. and Eddison, M. and Harrington, K.I.S. and Ferreira, T.A.
Nature Methods 18
: 374-377.
April 2021
Active perception during angiogenesis: filopodia speed up Notch selection of tip cells in silico and in vivo.
Zakirov, B. and Charalambous, G. and Thuret, R. and Aspalter, I.M. and Van-Vuuren, K. and Mead, T. and Harrington, K. and Regan, E.R. and Herbert, S.P. and Bentley, K.
Philosophical Transactions of the Royal Society of London Series B Biological Sciences 376
(1821): 20190753.
29 March 2021
Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum.
Epstein, L. and Dubois, Z. and Smith, J. and Lee, Y. and Harrington, K.
bioRxiv
: 2021.03.14.435300.
15 March 2021
Bionic tracking: using eye tracking to track biological cells in virtual reality.
Günther, U. and Harrington, K.I.S. and Dachselt, R. and Sbalzarini, I.F.
Lecture Notes in Computer Science 12535
: 280-297.
2021
2020
Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy.
Prahst, C. and Ashrafzadeh, P. and Mead, T. and Figueiredo, A. and Chang, K. and Richardson, D. and Venkaraman, L. and Richards, M. and Russo, A.M. and Harrington, K. and Ouarné, M. and Pena, A. and Chen, J.X. and Claesson-Welsh, L. and Cho, K.S. and Franco, C.A. and Bentley, K.
eLife 9
: e49779.
19 February 2020
2019
A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage.
Sharir, A. and Marangoni, P. and Zilionis, R. and Wan, M. and Wald, T. and Hu, J.K. and Kawaguchi, K. and Castillo-Azofeifa, D. and Epstein, L. and Harrington, K. and Pagella, P. and Mitsiadis, T. and Siebel, C.W. and Klein, A.M. and Klein, O.D.
Nature Cell Biology 21
(9): 1102-1112.
September 2019
Escalation of memory length in finite populations.
Harrington, K. and Pollack, J.
Artificial Life 25
(1): 22-32.
2 April 2019
Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish.
Daetwyler, S. and Günther, U. and Modes, C.D. and Harrington, K. and Huisken, J.
Development 146
(6): dev173757.
15 March 2019
2018
Acquisition and reconstruction of 4D surfaces of axolotl embryos with the flipping stage robotic microscope.
Crawford-Young, S.J. and Dittapongpitch, S. and Gordon, R. and Harrington, K.I.S.
Biosystems 173
: 214-220.
November 2018
FunImageJ: a lisp framework for scientific image processing.
Harrington, K.I.S. and Rueden, C.T. and Eliceiri, K.W.
Bioinformatics 34
(5): 899-900.
1 March 2018
Artificial gene regulatory networks-a review.
Cussat-Blanc, S. and Harrington, K. and Banzhaf, W.
Artificial Life 24
(4): 296-328.
2018
2016
Asymmetric division coordinates collective cell migration in angiogenesis.
Costa, G. and Harrington, K.I. and Lovegrove, H.E. and Page, D.J. and Chakravartula, S. and Bentley, K. and Herbert, S.P.
Nature Cell Biology 18
(12): 1292-1301.
December 2016
A circuit basis for morphogenesis.
Harrington, K.I.S.
Theoretical Computer Science 633
: 28-36.
20 June 2016
Temporal modulation of collective cell behavior controls vascular network topology.
Kur, E. and Kim, J. and Tata, A. and Comin, C.H. and Harrington, K.I. and Costa, L.d.F. and Bentley, K. and Gu, C.
eLife 5
: e13212.
24 February 2016
Configurable NOR gate arrays from Belousov-Zhabotinsky micro-droplets.
Wang, A.L. and Gold, J.M. and Tompkins, N. and Heymann, M. and Harrington, K.I. and Fraden, S.
European Physical Journal Special Topics 225
(1): 211-227.
February 2016
2015
Gene regulatory network evolution through augmenting topologies.
Cussat-Blanc, S. and Harrington, K. and Pollack, J.
IEEE Transactions on Evolutionary Computation 19
(6): 823-837.
December 2015
Genetically-regulated neuromodulation facilitates multi-task reinforcement learning.
Cussat-Blanc, S. and Harrington, K.I.S.
In: GECCO '15: Genetic and Evolutionary Computation Conference, Jul 2015, Madrid, Spain.
July 2015
2014
Modelling nonlinear chemical oscillators with inhibitory coupling.
Gold, J. and Wang, A. and Girabawe, C. and Harrington, K. and Fraden, S.
In: 2014 40th Annual Northeast Bioengineering Conference (NEBEC), 25-27 Apr 2014, Boston, MA, USA.
4 December 2014
Can active perception generate bistability? Heterogeneous collective dynamics and vascular patterning.
Bentley, K. and Harrington, K.I. and Regan, E.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA.
July 2014
Coevolution in hide and seek: camouflage and vision.
Harrington, K.I. and Freeman, J. and Pollack, J.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA.
July 2014
Feedback control of evolving swarms.
Gold, J. and Wang, A. and Harrington, K.I.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA.
July 2014
The resistance of swarm ecosystem under environmental variation.
Lowell, J. and Harrington, K. and Pollack, J.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA.
July 2014
Eco-evolutionary dynamics of complex social strategies in microbial communities.
Harrington, K.I. and Sanchez, A.
Communicative & Integrative Biology 7
(1): e28230.
25 February 2014
Robot coverage control by evolved neuromodulation.
Harrington, K.I. and Awa, E. and Cussat-Blanc, S. and Pollack, J.
In: 2013 International Joint Conference on Neural Networks (IJCNN 2013), 4-9 Aug 2013, Dallas, TX, USA.
9 January 2014
2012
Autoconstructive evolution for structural problems.
Harrington, K.I. and Spector, L. and Pollack, J.B. and O'Reilly, U.M.
In: GECCO '12: Genetic and Evolutionary Computation Conference, 7-11 Jul 2012, Philadelphia, PA, USA.
July 2012
Tag-based modularity in tree-based genetic programming.
Spector, L. and Harrington, K. and Helmuth, T.
In: GECCO '12: Genetic and Evolutionary Computation Conference, 7-11 Jul 2012, Philadelphia, PA, USA.
July 2012
The effects of finite populations and selection on the emergence of signaling.
Harrington, K.I. and Ozisik, A.P. and Pollack, J.B.
In: 13th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2012), 19-22 Jul 2012, East Lansing, Michigan, USA.
July 2012
The effects of tags on the evolution of honest signaling.
Ozisik, A.P. and Harrington, K.I.
In: GECCO '12: Genetic and Evolutionary Computation Conference, 7-11 Jul 2012, Philadelphia, PA, USA.
July 2012
2011
Communicated somatic markers benefit both the individual and the species.
Harrington, K.I. and Olsen, M.M. and Siegelmann, H. T.
In: 2011 International Joint Conference on Neural Networks (IJCNN 2011), 31 Jul - 5 Aug 2011, San Jose, CA, USA.
3 October 2011
Fecundity and selectivity in evolutionary computation.
Spector, L. and Helmuth, T. and Harrington, K.
In: GECCO '11: Genetic and Evolutionary Computation Conference, 12-16 Jul 2011, Dublin, Ireland.
July 2011
Imaging analysis of clock neurons reveals light buffers the wake-promoting effect of dopamine.
Shang, Y. and Haynes, P. and Pírez, N. and Harrington, K.I. and Guo, F. and Pollack, J. and Hong, P. and Griffith, L.C. and Rosbash, M.
Nature Neuroscience 14
(7): 889-895.
July 2011
Tag-based modules in genetic programming.
Spector, L. and Martin, B. and Harrington, K. and Helmuth, T.
In: GECCO '11: Genetic and Evolutionary Computation Conference, 12-16 Jul 2011, Dublin, Ireland.
July 2011
2010
Conspecific emotional cooperation biases population dynamics:a cellular automata approach.
Olsen, M.M. and Harrington, K.I. and Siegelmann, H.T.
International Journal of Natural Computing Research 1
(3): 51-65.
July 2010
2008
Emotions for Strategic Real-Time Systems.
Olsen, M.M. and Harrington, K. and Siegelmann, H.T.
In: 2008 AAAI Spring Symposium, 26-28 Mar 2008, Stanford, CA, USA.
2008
2007
Predicting reactions from amino acid sequences in S. cerevisiae: an evolutionary computation approach.
Harrington, K.
In: GECCO '07: Genetic and Evolutionary Computation Conference, 7-11 Jul 2007, London, UK.
July 2007
Adaptive multi-modal sensors.
Harrington, K.I. and Siegelmann, H.T.
In:
50 years of artificial intelligence.
Lecture Notes in Computer Science, 4850
(4850).
Springer, Berlin, Heidelberg, 164-173.
ISBN 978-3-540-77295-8
2007
This list was generated on Fri Apr 19 02:24:18 2024 CEST.
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