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2021

Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum.
Epstein, L. and Dubois, Z. and Smith, J. and Lee, Y. and Harrington, K.
Biosystems 208 : 104483. October 2021

SNT: a unifying toolbox for quantification of neuronal anatomy.
Arshadi, C. and Günther, U. and Eddison, M. and Harrington, K.I.S. and Ferreira, T.A.
Nature Methods 18 : 374-377. April 2021

Active perception during angiogenesis: filopodia speed up Notch selection of tip cells in silico and in vivo.
Zakirov, B. and Charalambous, G. and Thuret, R. and Aspalter, I.M. and Van-Vuuren, K. and Mead, T. and Harrington, K. and Regan, E.R. and Herbert, S.P. and Bentley, K.
Philosophical Transactions of the Royal Society of London Series B Biological Sciences 376 (1821): 20190753. 29 March 2021

Complex population dynamics in a spatial microbial ecosystem with Physarum polycephalum.
Epstein, L. and Dubois, Z. and Smith, J. and Lee, Y. and Harrington, K.
bioRxiv : 2021.03.14.435300. 15 March 2021

RS-FISH: precise, interactive and scalable smFISH spot detection using Radial Symmetry.
Bahry, E. and Breimann, L. and Epstein, L. and Kolyvanov, K. and Harrington, K.I.S. and Lionnet, T. and Preibisch, S.
bioRxiv : 2021.03.09.434205. 9 March 2021

Bionic tracking: using eye tracking to track biological cells in virtual reality.
Günther, U. and Harrington, K.I.S. and Dachselt, R. and Sbalzarini, I.F.
Lecture Notes in Computer Science 12535 : 280-297. 2021

2020

Mouse retinal cell behaviour in space and time using light sheet fluorescence microscopy.
Prahst, C. and Ashrafzadeh, P. and Mead, T. and Figueiredo, A. and Chang, K. and Richardson, D. and Venkaraman, L. and Richards, M. and Russo, A.M. and Harrington, K. and Ouarné, M. and Pena, A. and Chen, J.X. and Claesson-Welsh, L. and Cho, K.S. and Franco, C.A. and Bentley, K.
eLife 9 : e49779. 19 February 2020

2019

A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage.
Sharir, A. and Marangoni, P. and Zilionis, R. and Wan, M. and Wald, T. and Hu, J.K. and Kawaguchi, K. and Castillo-Azofeifa, D. and Epstein, L. and Harrington, K. and Pagella, P. and Mitsiadis, T. and Siebel, C.W. and Klein, A.M. and Klein, O.D.
Nature Cell Biology 21 (9): 1102-1112. September 2019

Escalation of memory length in finite populations.
Harrington, K. and Pollack, J.
Artificial Life 25 (1): 22-32. 2 April 2019

Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish.
Daetwyler, S. and Günther, U. and Modes, C.D. and Harrington, K. and Huisken, J.
Development 146 (6): dev173757. 15 March 2019

2018

Acquisition and reconstruction of 4D surfaces of axolotl embryos with the flipping stage robotic microscope.
Crawford-Young, S.J. and Dittapongpitch, S. and Gordon, R. and Harrington, K.I.S.
Biosystems 173 : 214-220. November 2018

FunImageJ: a lisp framework for scientific image processing.
Harrington, K.I.S. and Rueden, C.T. and Eliceiri, K.W.
Bioinformatics 34 (5): 899-900. 1 March 2018

Artificial gene regulatory networks-a review.
Cussat-Blanc, S. and Harrington, K. and Banzhaf, W.
Artificial Life 24 (4): 296-328. 2018

2016

Asymmetric division coordinates collective cell migration in angiogenesis.
Costa, G. and Harrington, K.I. and Lovegrove, H.E. and Page, D.J. and Chakravartula, S. and Bentley, K. and Herbert, S.P.
Nature Cell Biology 18 (12): 1292-1301. December 2016

A circuit basis for morphogenesis.
Harrington, K.I.S.
Theoretical Computer Science 633 : 28-36. 20 June 2016

Temporal modulation of collective cell behavior controls vascular network topology.
Kur, E. and Kim, J. and Tata, A. and Comin, C.H. and Harrington, K.I. and Costa, L.d.F. and Bentley, K. and Gu, C.
eLife 5 : e13212. 24 February 2016

Configurable NOR gate arrays from Belousov-Zhabotinsky micro-droplets.
Wang, A.L. and Gold, J.M. and Tompkins, N. and Heymann, M. and Harrington, K.I. and Fraden, S.
European Physical Journal Special Topics 225 (1): 211-227. February 2016

2015

Gene regulatory network evolution through augmenting topologies.
Cussat-Blanc, S. and Harrington, K. and Pollack, J.
IEEE Transactions on Evolutionary Computation 19 (6): 823-837. December 2015

Genetically-regulated neuromodulation facilitates multi-task reinforcement learning.
Cussat-Blanc, S. and Harrington, K.I.S.
In: GECCO '15: Genetic and Evolutionary Computation Conference, Jul 2015, Madrid, Spain. July 2015

2014

Modelling nonlinear chemical oscillators with inhibitory coupling.
Gold, J. and Wang, A. and Girabawe, C. and Harrington, K. and Fraden, S.
In: 2014 40th Annual Northeast Bioengineering Conference (NEBEC), 25-27 Apr 2014, Boston, MA, USA. 4 December 2014

Can active perception generate bistability? Heterogeneous collective dynamics and vascular patterning.
Bentley, K. and Harrington, K.I. and Regan, E.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA. July 2014

Coevolution in hide and seek: camouflage and vision.
Harrington, K.I. and Freeman, J. and Pollack, J.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA. July 2014

Feedback control of evolving swarms.
Gold, J. and Wang, A. and Harrington, K.I.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA. July 2014

The resistance of swarm ecosystem under environmental variation.
Lowell, J. and Harrington, K. and Pollack, J.
In: 14th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2014), 30 Jul - 02 Aug 2014, Manhattan, New York, USA. July 2014

Eco-evolutionary dynamics of complex social strategies in microbial communities.
Harrington, K.I. and Sanchez, A.
Communicative & Integrative Biology 7 (1): e28230. 25 February 2014

Robot coverage control by evolved neuromodulation.
Harrington, K.I. and Awa, E. and Cussat-Blanc, S. and Pollack, J.
In: 2013 International Joint Conference on Neural Networks (IJCNN 2013), 4-9 Aug 2013, Dallas, TX, USA. 9 January 2014

2012

Autoconstructive evolution for structural problems.
Harrington, K.I. and Spector, L. and Pollack, J.B. and O'Reilly, U.M.
In: GECCO '12: Genetic and Evolutionary Computation Conference, 7-11 Jul 2012, Philadelphia, PA, USA. July 2012

Tag-based modularity in tree-based genetic programming.
Spector, L. and Harrington, K. and Helmuth, T.
In: GECCO '12: Genetic and Evolutionary Computation Conference, 7-11 Jul 2012, Philadelphia, PA, USA. July 2012

The effects of finite populations and selection on the emergence of signaling.
Harrington, K.I. and Ozisik, A.P. and Pollack, J.B.
In: 13th International Conference on the Synthesis and Simulation of Living Systems (ALIFE 2012), 19-22 Jul 2012, East Lansing, Michigan, USA. July 2012

The effects of tags on the evolution of honest signaling.
Ozisik, A.P. and Harrington, K.I.
In: GECCO '12: Genetic and Evolutionary Computation Conference, 7-11 Jul 2012, Philadelphia, PA, USA. July 2012

2011

Communicated somatic markers benefit both the individual and the species.
Harrington, K.I. and Olsen, M.M. and Siegelmann, H. T.
In: 2011 International Joint Conference on Neural Networks (IJCNN 2011), 31 Jul - 5 Aug 2011, San Jose, CA, USA. 3 October 2011

Fecundity and selectivity in evolutionary computation.
Spector, L. and Helmuth, T. and Harrington, K.
In: GECCO '11: Genetic and Evolutionary Computation Conference, 12-16 Jul 2011, Dublin, Ireland. July 2011

Imaging analysis of clock neurons reveals light buffers the wake-promoting effect of dopamine.
Shang, Y. and Haynes, P. and Pírez, N. and Harrington, K.I. and Guo, F. and Pollack, J. and Hong, P. and Griffith, L.C. and Rosbash, M.
Nature Neuroscience 14 (7): 889-895. July 2011

Tag-based modules in genetic programming.
Spector, L. and Martin, B. and Harrington, K. and Helmuth, T.
In: GECCO '11: Genetic and Evolutionary Computation Conference, 12-16 Jul 2011, Dublin, Ireland. July 2011

2010

Conspecific emotional cooperation biases population dynamics:a cellular automata approach.
Olsen, M.M. and Harrington, K.I. and Siegelmann, H.T.
International Journal of Natural Computing Research 1 (3): 51-65. July 2010

2008

Emotions for Strategic Real-Time Systems.
Olsen, M.M. and Harrington, K. and Siegelmann, H.T.
In: 2008 AAAI Spring Symposium, 26-28 Mar 2008, Stanford, CA, USA. 2008

2007

Predicting reactions from amino acid sequences in S. cerevisiae: an evolutionary computation approach.
Harrington, K.
In: GECCO '07: Genetic and Evolutionary Computation Conference, 7-11 Jul 2007, London, UK. July 2007

Adaptive multi-modal sensors.
Harrington, K.I. and Siegelmann, H.T.
In: 50 years of artificial intelligence. Lecture Notes in Computer Science, 4850 (4850). Springer, Berlin, Heidelberg, 164-173. ISBN 978-3-540-77295-8 2007

This list was generated on Fri Sep 17 02:22:19 2021 CEST.
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