2025
Neuromuscular dysfunction in patient-derived FUS(R244RR)-ALS iPSC model via axonal downregulation of neuromuscular junction proteins.
von Kügelgen, N. 
ORCID: https://orcid.org/0000-0001-8116-9032, Ludwik, K.A. ORCID: https://orcid.org/0000-0002-9436-7270, Mendonsa, S. ORCID: https://orcid.org/0000-0001-9814-6662, Römer, C., Becher, E., Breimann, L. ORCID: https://orcid.org/0000-0001-7702-5749, Strauch, M., Mari, T. ORCID: https://orcid.org/0000-0001-6011-9386, Mongellaz, S., Zuckerman, B. ORCID: https://orcid.org/0000-0002-6216-011X, Efendic, F. ORCID: https://orcid.org/0000-0002-8462-0690, Grexa, N., Oliveras-Martinez, A. ORCID: https://orcid.org/0000-0002-5880-5245, Woehler, A. ORCID: https://orcid.org/0000-0001-5157-9313, Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751, La Bella, V., Ulitsky, I. ORCID: https://orcid.org/0000-0003-0555-6561 and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
NAR Molecular Medicine 2
(2): ugaf005.
April 2025
Concurrent profiling of localized transcriptome and RNA dynamics in neurons by spatial SLAMseq.
Dantsuji, S. and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Methods in Molecular Biology 2863
: 297-317.
2025
2024
Mechanistic insights into the basis of widespread RNA localization.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Nature Cell Biology 26
(7): 1037-1046.
July 2024
2023
mRNA stability and m(6)A are major determinants of subcellular mRNA localization in neurons.
Loedige, I., Baranovskii, A. ORCID: https://orcid.org/0000-0001-7217-3881, Mendonsa, S. ORCID: https://orcid.org/0000-0001-9814-6662, Dantsuji, S., Popitsch, N., Breimann, L. ORCID: https://orcid.org/0000-0001-7702-5749, Zerna, N., Cherepanov, V., Milek, M. ORCID: https://orcid.org/0000-0002-0803-8439, Ameres, S. and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Molecular Cell 83
(15): 2709-2725.
3 August 2023
First demonstration of miRNA-dependent mRNA decay.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Nature Reviews Molecular Cell Biology 24
(3): 164.
March 2023
Massively parallel identification of mRNA localization elements in primary cortical neurons.
Mendonsa, S. ORCID: https://orcid.org/0000-0001-9814-6662, von Kügelgen, N. ORCID: https://orcid.org/0000-0001-8116-9032, Dantsuji, S., Ron, M., Breimann, L. ORCID: https://orcid.org/0000-0001-7702-5749, Baranovskii, A. ORCID: https://orcid.org/0000-0001-7217-3881, Lödige, I., Kirchner, M. ORCID: https://orcid.org/0000-0002-7049-534X, Fischer, M., Zerna, N., Bujanic, L., Mertins, P. ORCID: https://orcid.org/0000-0002-2245-528X, Ulitsky, I. ORCID: https://orcid.org/0000-0003-0555-6561 and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Nature Neuroscience 26
(3): 394-405.
March 2023
2022
Multi-omics alleviates the limitations of panel sequencing for cancer drug response prediction.
Baranovskii, A. ORCID: https://orcid.org/0000-0001-7217-3881, Gündüz, I.B. ORCID: https://orcid.org/0000-0003-2641-0916, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Uyar, B. ORCID: https://orcid.org/0000-0002-3170-4890 and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
Cancers 14
(22): 5604.
15 November 2022
Identifying tumor cells at the single-cell level using machine learning.
Dohmen, J. ORCID: https://orcid.org/0000-0002-7826-3025, Baranovskii, A. ORCID: https://orcid.org/0000-0001-7217-3881, Ronen, J. ORCID: https://orcid.org/0000-0003-3980-6469, Uyar, B. ORCID: https://orcid.org/0000-0002-3170-4890, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792 and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
Genome Biology 23
(1): 123.
30 May 2022
Transcriptome analysis reveals high tumor heterogeneity with respect to re-activation of stemness and proliferation programs.
Baranovsky, A. ORCID: https://orcid.org/0000-0001-7217-3881, Ivanov, T., Granovskaya, M., Papatsenko, D. and Pervouchine, D.D.
PLoS ONE 17
(5): e0268626.
19 May 2022
The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression.
Bujanic, L., Shevchuk, O., von Kügelgen, N. ORCID: https://orcid.org/0000-0001-8116-9032, Kalinina, A., Ludwik, K. ORCID: https://orcid.org/0000-0002-9436-7270, Koppstein, D. ORCID: https://orcid.org/0000-0002-8618-7237, Zerna, N., Sickmann, A. and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
RNA 28
(5): 766-779.
May 2022
Novel targets, treatments, and advanced models for intracerebral haemorrhage.
Zille, M., Farr, T.D., Keep, R.F., Römer, C., Xi, G. and Boltze, J.
EBioMedicine 76
: 103880.
12 February 2022
2021
Charcot-Marie-Tooth mutation in glycyl-tRNA synthetase stalls ribosomes in a pre-accommodation state and activates integrated stress response.
Mendonsa, S. ORCID: https://orcid.org/0000-0001-9814-6662, von Kuegelgen, N. ORCID: https://orcid.org/0000-0001-8116-9032, Bujanic, L. and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Nucleic Acids Research 49
(17): 10007-10017.
27 September 2021
A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion.
Witte, F., Ruiz-Orera, J. ORCID: https://orcid.org/0000-0002-8317-0034, Ciolli Mattioli, C. ORCID: https://orcid.org/0000-0002-8499-1387, Blachut, S. ORCID: https://orcid.org/0009-0007-0102-9867, Adami, E. ORCID: https://orcid.org/0000-0002-1813-6681, Schulz, J.F. ORCID: https://orcid.org/0000-0002-8157-2224, Schneider-Lunitz, V. ORCID: https://orcid.org/0000-0002-3980-3789, Hummel, O. ORCID: https://orcid.org/0009-0000-9986-8333, Patone, G. ORCID: https://orcid.org/0000-0002-7242-0341, Mücke, M.B. ORCID: https://orcid.org/0000-0002-4957-3307, Šilhavý, Jan, Heinig, M. ORCID: https://orcid.org/0000-0002-5612-1720, Bottolo, L., Sanchis, D., Vingron, M., Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887, Pravenec, M. ORCID: https://orcid.org/0000-0001-9197-5871, Hubner, N. ORCID: https://orcid.org/0000-0002-1218-6223 and van Heesch, S. ORCID: https://orcid.org/0000-0001-9593-1980
Genome Biology 22
(1): 191.
28 June 2021
MACC1 regulates clathrin-mediated endocytosis and receptor recycling of transferrin receptor and EGFR in colorectal cancer.
Imbastari, F. ORCID: https://orcid.org/0000-0001-8440-9847, Dahlmann, M. ORCID: https://orcid.org/0000-0002-0036-5283, Sporbert, A. ORCID: https://orcid.org/0000-0002-3738-1295, Ciolli Mattioli, C. ORCID: https://orcid.org/0000-0002-8499-1387, Mari, T. ORCID: https://orcid.org/0000-0001-6011-9386, Scholz, F. ORCID: https://orcid.org/0000-0002-0253-081X, Timm, L., Twamley, S., Migotti, R. ORCID: https://orcid.org/0000-0001-7183-1424, Walther, W. ORCID: https://orcid.org/0000-0003-2884-0231, Dittmar, G. ORCID: https://orcid.org/0000-0003-3647-8623, Rehm, A. ORCID: https://orcid.org/0000-0001-7490-1950 and Stein, U. ORCID: https://orcid.org/0000-0001-7006-282X
Cellular and Molecular Life Sciences 78
(7): 3525-3542.
April 2021
Viruses and endogenous retroviruses as roots for neuroinflammation and neurodegenerative diseases.
Römer, C.
Frontiers in Neuroscience 15
: 648629.
12 March 2021
2020
Conservation of a core neurite transcriptome across neuronal types and species.
von Kügelgen, N. ORCID: https://orcid.org/0000-0001-8116-9032 and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Wiley Interdisciplinary Reviews: RNA 11
(4): e1590.
July 2020
2019
Roles of long noncoding RNAs and circular RNAs in translation.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887 and Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332
Cold Spring Harbor Perspectives in Biology 11
(6): a032680.
3 June 2019
Genome-wide analysis of RNA and protein localization and local translation in mESC-derived neurons.
Ludwik, K.A. ORCID: https://orcid.org/0000-0002-9436-7270, von Kuegelgen, N. ORCID: https://orcid.org/0000-0001-8116-9032 and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Methods 162-163
: 31-41.
June 2019
Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.
Ciolli Mattioli, C. ORCID: https://orcid.org/0000-0002-8499-1387, Rom, A., Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Imami, K. ORCID: https://orcid.org/0000-0002-7451-4982, Arrey, G., Terne, M., Woehler, A. ORCID: https://orcid.org/0000-0001-5157-9313, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117, Ulitsky, I. ORCID: https://orcid.org/0000-0003-0555-6561 and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Nucleic Acids Research 47
(5): 2560-2573.
18 March 2019
2017
RNA localization is a key determinant of neurite-enriched proteome.
Zappulo, A., van den Bruck, D., Ciolli Mattioli, C. ORCID: https://orcid.org/0000-0002-8499-1387, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Imami, K. ORCID: https://orcid.org/0000-0002-7451-4982, McShane, E. ORCID: https://orcid.org/0000-0002-7806-2063, Moreno-Estelles, M., Calviello, L. ORCID: https://orcid.org/0000-0002-5600-0988, Filipchyk, A. ORCID: https://orcid.org/0000-0002-2029-8460, Peguero-Sanchez, E. ORCID: https://orcid.org/0000-0002-8317-5572, Müller, T. ORCID: https://orcid.org/0000-0001-8096-1853, Woehler, A. ORCID: https://orcid.org/0000-0001-5157-9313, Birchmeier, C. ORCID: https://orcid.org/0000-0002-2041-8872, Merino, E., Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332, Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116, Mazzoni, E.O., Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751, Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117 and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Nature Communications 8
(1): 583.
19 September 2017
Translation of circRNAs.
Pamudurti, N.R. ORCID: https://orcid.org/0000-0001-9527-1118, Bartok, O., Jens, M. ORCID: https://orcid.org/0000-0002-6660-8743, Ashwal-Fluss, R., Stottmeister, C. ORCID: https://orcid.org/0000-0002-5326-6043, Ruhe, L. ORCID: https://orcid.org/0009-0003-1401-8009, Hanan, M., Wyler, E. ORCID: https://orcid.org/0000-0002-9884-1806, Perez-Hernandez, D. ORCID: https://orcid.org/0000-0003-0266-9050, Ramberger, E. ORCID: https://orcid.org/0000-0003-2760-2696, Shenzis, S., Samson, M., Dittmar, G. ORCID: https://orcid.org/0000-0003-3647-8623, Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734, Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887, Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332 and Kadener, S.
Molecular Cell 66
(1): 9-21.
6 April 2017
Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution.
Mauri, M. ORCID: https://orcid.org/0000-0003-0098-3900, Kirchner, M. ORCID: https://orcid.org/0000-0002-7049-534X, Aharoni, R., Ciolli Mattioli, C. ORCID: https://orcid.org/0000-0002-8499-1387, van den Bruck, D., Gutkovitch, N., Modepalli, V., Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751, Moran, Y. ORCID: https://orcid.org/0000-0001-9928-9294 and Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887
Nucleic Acids Research 45
(2): 938-950.
25 January 2017
2016
Eyes on translation.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887 and Landthaler, M. ORCID: https://orcid.org/0000-0002-1075-8734
Molecular Cell 63
(6): 918-925.
15 September 2016
2014
Epigenetic and neurological effects and safety of high-dose nicotinamide in patients with Friedreich's ataxia: an exploratory, open-label, dose-escalation study.
Libri, V., Yandim, C., Athanasopoulos, S., Loyse, N., Natisvili, T., Law, P.P., Chan, P.K., Mohammad, T., Mauri, M. ORCID: https://orcid.org/0000-0003-0098-3900, Tam, K.T., Leiper, J., Piper, S., Ramesh, A., Parkinson, M.H., Huson, L., Giunti, P. and Festenstein, R.
Lancet 384
(9942): 504-513.
9 August 2014
2011
miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887, Mathys, H., Zipprich, J.T., Attig, J., Colic, M., Parker, R. and Filipowicz, W.
Nature Structural & Molecular Biology 18
(11): 1218-1226.
7 October 2011
2010
The GW/WG repeats of Drosophila GW182 function as effector motifs for miRNA-mediated repression.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887, Parker, R. and Filipowicz, W.
Nucleic Acids Research 38
(19): 6673-6683.
October 2010
Human Pat1b connects deadenylation with mRNA decapping and controls the assembly of processing bodies.
Ozgur, S., Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887 and Stoecklin, G.
Molecular and Cellular Biology 30
(17): 4308-4323.
September 2010
2009
Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887 and Filipowicz, W.
Current Opinion in Cell Biology 21
(3): 452-460.
June 2009
Multiple independent domains of dGW182 function in miRNA-mediated repression in Drosophila.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887, Filipowicz, W. and Parker, R.
RNA 15
(5): 794-803.
May 2009
2006
Bruno acts as a dual repressor of oskar translation, promoting mRNA oligomerization and formation of silencing particles.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887, Hentze, M.W. and Ephrussi, A.
Cell 124
(3): 521-533.
10 February 2006
2004
Drosophila development: RNA interference ab ovo.
Chekulaeva, M. ORCID: https://orcid.org/0000-0002-6868-7887 and Ephrussi, A.
Current Biology 14
(11): R428-R430.
8 June 2004
2001
Continuous-exchange cell-free protein-synthesizing system: synthesis of HIV-1 antigen Nef.
Chekulayeva, M.N. ORCID: https://orcid.org/0000-0002-6868-7887, Kurnasov, O.V., Shirokov, V.A. and Spirin, A.S.
Biochemical and Biophysical Research Communications 280
(3): 914-917.
26 January 2001
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