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MOCAT2: a metagenomic assembly, annotation and profiling framework

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Item Type:Article
Title:MOCAT2: a metagenomic assembly, annotation and profiling framework
Creators Name:Kultima, J.R. and Coelho, L.P. and Forslund, K. and Huerta-Cepas, J. and Li, S.S. and Driessen, M. and Voigt, A.Y. and Zeller, G. and Sunagawa, S. and Bork, P.
Abstract:MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes. Availability and Implementation: MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.de. Contact: bork@embl.de
Keywords:Factual Databases, Metagenome, Metagenomics, Software
Source:Bioinformatics
ISSN:1367-4803
Publisher:Oxford University Press (U.K.)
Volume:32
Number:16
Page Range:2520-2523
Date:15 August 2016
Official Publication:https://doi.org/10.1093/bioinformatics/btw183
PubMed:View item in PubMed

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