2024

Using paired-end read orientations to assess technical biases in capture Hi-C.
Hansen, P. ORCID: https://orcid.org/0000-0001-5535-2845, Blau, H. ORCID: https://orcid.org/0000-0003-4557-5492, Hecht, J. ORCID: https://orcid.org/0000-0002-6996-5279, Karlebach, G. ORCID: https://orcid.org/0000-0002-1653-8206, Krannich, A. ORCID: https://orcid.org/0000-0002-4025-6495, Steinhaus, R. ORCID: https://orcid.org/0000-0001-6613-4675, Truss, M. ORCID: https://orcid.org/0000-0001-8872-2179 and Robinson, P.N. ORCID: https://orcid.org/0000-0002-0736-9199
NAR Genomics and Bioinformatics 6 (4): lqae156. December 2024

2023

Cardiovascular disease biomarkers derived from circulating cell-free DNA methylation.
Cuadrat, R.R.C. ORCID: https://orcid.org/0000-0001-8289-2599, Kratzer, A. ORCID: https://orcid.org/0000-0002-6151-5097, Arnal, H.G. ORCID: https://orcid.org/0000-0002-5763-9388, Rathgeber, A.C. ORCID: https://orcid.org/0000-0003-3264-1040, Wreczycka, K. ORCID: https://orcid.org/0000-0002-5994-4802, Blume, A. ORCID: https://orcid.org/0000-0003-3045-8234, Gündüz, I.B. ORCID: https://orcid.org/0000-0003-2641-0916, Ebenal, V., Mauno, T., Osberg, B. ORCID: https://orcid.org/0000-0002-9854-9901, Moobed, M., Hartung, J., Jakobs, K., Seppelt, C. ORCID: https://orcid.org/0000-0003-4892-6809, Meteva, D. ORCID: https://orcid.org/0000-0003-4741-924X, Haghikia, A. ORCID: https://orcid.org/0000-0001-5568-8808, Leistner, D.M., Landmesser, Ulf ORCID: https://orcid.org/0000-0002-0214-3203 and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
NAR Genomics and Bioinformatics 5 (2): lqad061. June 2023

A computational map of the human-SARS-CoV-2 protein-RNA interactome predicted at single-nucleotide resolution.
Horlacher, M. ORCID: https://orcid.org/0000-0002-7884-7135, Oleshko, S., Hu, Y. ORCID: https://orcid.org/0000-0003-3811-3206, Ghanbari, M. ORCID: https://orcid.org/0000-0002-6015-2968, Cantini, G. ORCID: https://orcid.org/0000-0003-1691-3560, Schinke, P. ORCID: https://orcid.org/0000-0002-0422-3215, Vergara, E.E., Bittner, F., Mueller, N.S, Ohler, U. ORCID: https://orcid.org/0000-0002-0881-3116, Moyon, L. ORCID: https://orcid.org/0000-0003-2390-3942 and Marsico, A.
NAR Genomics and Bioinformatics 5 (1): lqad010. March 2023

2022

AntiSplodge: a neural-network-based RNA-profile deconvolution pipeline designed for spatial transcriptomics.
Lund, J.B. ORCID: https://orcid.org/0000-0001-9483-1603, Lindberg, E.L. ORCID: https://orcid.org/0000-0002-2979-433X, Maatz, H. ORCID: https://orcid.org/0000-0002-9232-6272, Pottbaecker, F., Hübner, N. ORCID: https://orcid.org/0000-0002-1218-6223 and Lippert, C. ORCID: https://orcid.org/0000-0001-6363-2556
NAR Genomics and Bioinformatics 4 (4): lqac073. December 2022

Optocoder: computational decoding of spatially indexed bead arrays.
Senel, E. ORCID: https://orcid.org/0000-0003-1966-1186, Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332 and Karaiskos, N. ORCID: https://orcid.org/0000-0001-7771-3947
NAR Genomics and Bioinformatics 4 (2): lqac042. June 2022