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Peptide-based interaction proteomics.
Meyer, K. and Selbach, M.
Molecular & Cellular Proteomics 19 (7): 1070-1075. 1 July 2020


TMT labeling for the masses: a robust and cost-efficient, in-solution labeling approach.
Zecha, J. and Satpathy, S. and Kanashova, T. and Avanessian, S.C. and Kane, M.H. and Clauser, K.R. and Mertins, P. and Carr, S.A. and Kuster, B.
Molecular & Cellular Proteomics 18 (7): 1468-1478. 1 July 2019

A curated resource for phosphosite-specific signature analysis.
Krug, K. and Mertins, P. and Zhang, B. and Hornbeck, P. and Raju, R. and Ahmad, R. and Szucs, M. and Mundt, F. and Forestier, D. and Jane-Valbuena, J. and Keshishian, H. and Gillette, M.A. and Tamayo, P. and Mesirov, J.P. and Jaffe, J.D. and Carr, S.A. and Mani, D.R.
Molecular & Cellular Proteomics 18 (3): 576-593. 1 March 2019


Quantitative proteomic approach identifies Vpr binding protein as novel host factor supporting influenza A virus infections in human cells.
Sadewasser, A. and Paki, K. and Eichelbaum, K. and Bogdanow, B. and Saenger, S. and Budt, M. and Lesch, M. and Hinz, K.P. and Herrmann, A. and Meyer, T.F. and Karlas, A. and Selbach, M. and Wolff, T.
Molecular & Cellular Proteomics 16 (5): 728-742. 1 May 2017

Quantitative GTPase affinity purification identifies Rho family protein interaction partners.
Paul, F. and Zauber, H. and von Berg, L. and Rocks, O. and Daumke, O. and Selbach, M.
Molecular & Cellular Proteomics 16 (1): 73-85. 1 January 2017

Proteome profiling outperforms transcriptome profiling for coexpression based gene function prediction.
Wang, J. and Ma, Z. and Carr, S.A. and Mertins, P. and Zhang, H. and Zhang, Z. and Chan, D.W. and Ellis, M.J.C. and Townsend, R.R. and Smith, R.D. and McDermott, J.E. and Chen, X. and Paulovich, A.G. and Boja, E.S. and Mesri, M. and Kinsinger, C.R. and Rodriguez, H. and Rodland, K.D. and Liebler, D.C. and Zhang, B.
Molecular & Cellular Proteomics 16 (1): 121-134. 1 January 2017


Systematic errors in peptide and protein identification and quantification by modified peptides.
Bogdanow, B. and Zauber, H. and Selbach, M.
Molecular & Cellular Proteomics 15 (8): 2791-2801. 1 August 2016

In vivo interaction proteomics in Caenorhabditis elegans embryos provides new insights into P granule dynamics.
Chen, J.X. and Cipriani, P.G. and Mecenas, D. and Polanowska, J. and Piano, F. and Gunsalus, K.C. and Selbach, M.
Molecular & Cellular Proteomics 15 (5): 1642-1657. 1 May 2016

An analysis of the sensitivity of proteogenomic mapping of somatic mutations and novel splicing events in cancer.
Ruggles, K.V. and Tang, Z. and Wang, X. and Grover, H. and Askenazi, M. and Teubl, J. and Cao, S. and McLellan, M.D. and Clauser, K.R. and Tabb, D.L. and Mertins, P. and Slebos, R. and Erdmann-Gilmore, P. and Li, S. and Gunawardena, H.P. and Xie, L. and Liu, T. and Zhou, J.Y. and Sun, S. and Hoadley, K.A. and Perou, C.M. and Chen, X. and Davies, S.R. and Maher, C.A. and Kinsinger, C.R. and Rodland, K.D. and Zhang, H. and Zhang, Z. and Ding, L. and Townsend, R.R. and Rodriguez, H. and Chan, D. and Smith, R.D. and Liebler, D.C. and Carr, S.A. and Payne, S. and Ellis, M.J. and Fenyö, D.
Molecular & Cellular Proteomics 15 (3): 1060-1071. 1 March 2016


Multiplexed, quantitative workflow for sensitive biomarker discovery in plasma yields novel candidates for early myocardial injury.
Keshishian, H. and Burgess, M.W. and Gillette, M.A. and Mertins, P. and Clauser, K.R. and Mani, D.R. and Kuhn, E.W. and Farrell, L.A. and Gerszten, R.E. and Carr, S.A.
Molecular & Cellular Proteomics 14 (9): 2375-2393. 1 September 2015

Deep, quantitative coverage of the lysine acetylome using novel anti-acetyl-lysine antibodies and an optimized proteomic workflow.
Svinkina, T. and Gu, H. and Silva, J.C. and Mertins, P. and Qiao, J. and Fereshetian, S. and Jaffe, J.D. and Kuhn, E. and Udeshi, N.D. and Carr, S.A.
Molecular & Cellular Proteomics 14 (9): 2429-2440. 1 September 2015

Cytoskeletal components define protein location to membrane microdomains.
Szymanski, W.G. and Zauber, H. and Erban, A. and Wu, X.N. and Schulze, W.X.
Molecular & Cellular Proteomics 14 (9): 2493-2509. September 2015

Functional proteomic analysis of repressive histone methyltransferase complexes reveals ZNF518B as a G9A regulator.
Maier, V.K. and Feeney, C.M. and Taylor, J.E. and Creech, A.L. and Qiao, J.W. and Szanto, A. and Das, P.P. and Chevrier, N. and Cifuentes-Rojas, C. and Orkin, S.H. and Carr, S.A. and Jaffe, J.D. and Mertins, P. and Lee, J.T.
Molecular & Cellular Proteomics 14 (6): 1435-1446. 1 June 2015

Quantitative proteomics reveals dynamic interaction of c-Jun N-terminal kinase (JNK) with RNA transport granule proteins splicing factor proline- and glutamine-rich (Sfpq) and non-POU domain-containing octamer-binding protein (Nono) during neuronal differentiation.
Sury, M.D. and McShane, E. and Hernandez-Miranda, L.R. and Birchmeier, C. and Selbach, M.
Molecular & Cellular Proteomics 14 (1): 50-65. 1 January 2015


Using in vivo-biotinylated ubiquitin to describe a mitotic exit ubiquitome from human cells.
Min, M. and Mayor, U. and Dittmar, G. and Lindon, C.
Molecular & Cellular Proteomics 13 (9): 2411-2425. September 2014

Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels.
Mertins, P. and Yang, F. and Liu, T. and Mani, D.R. and Petyuk, V.A. and Gillette, M.A. and Clauser, K.R. and Qiao, J.W. and Gritsenko, M.A. and Moore, R.J. and Levine, D.A. and Townsend, R. and Erdmann-Gilmore, P. and Snider, J.E. and Davies, S.R. and Ruggles, K.V. and Fenyo, D. and Kitchens, R.T. and Li, S. and Olvera, N. and Dao, F. and Rodriguez, H. and Chan, D.W. and Liebler, D. and White, F. and Rodland, K.D. and Mills, G.B. and Smith, R.D. and Paulovich, A.G. and Ellis, M. and Carr, S.A.
Molecular & Cellular Proteomics 13 (7): 1690-1704. 1 July 2014

Identification of importin alpha 7 specific transport cargoes using a proteomic screening approach.
Hügel, S. and Depping, R. and Dittmar, G. and Rother, F. and Cabot, R. and Sury, M.D. and Hartmann, E. and Bader, M.
Molecular & Cellular Proteomics 13 (5): 1286-1298. 1 May 2014

Proteomic and functional consequences of hexokinase deficiency in glucose-repressible Kluyveromyces lactis.
Mates, N. and Kettner, K. and Heidenreich, F. and Pursche, T. and Migotti, R. and Kahlert, G. and Kuhlisch, E. and Breunig, K.D. and Schellenberger, W. and Dittmar, G. and Hoflack, B. and Kriegel, T.M.
Molecular & Cellular Proteomics 13 (3): 860-875. 1 March 2014


Protein sets define disease states and predict in vivo effects of drug treatment.
Meierhofer, D. and Weidner, C. and Hartmann, L. and Mayr, J.A. and Han, C.T. and Schroeder, F.C. and Sauer, S.
Molecular & Cellular Proteomics 12 (7): 1965-1979. 1 July 2013

Argonaute2 regulates the pancreatic β-cell secretome.
Tattikota, S.G. and Sury, M.D. and Rathjen, T. and Wessels, H.H. and Pandey, A.K. and You, X. and Becker, C. and Chen, W. and Selbach, M. and Poy, M.N.
Molecular & Cellular Proteomics 12 (5): 1214-1225. May 2013

Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
Udeshi, N.D. and Svinkina, T. and Mertins, P. and Kuhn, E. and Mani, D.R. and Qiao, J.W. and Carr, S.A.
Molecular & Cellular Proteomics 12 (3): 825-831. 1 March 2013


iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics.
Mertins, P. and Udeshi, N.D. and Clauser, K.R. and Mani, D.R. and Patel, J. and Ong, S.E. and Jaffe, J.D. and Carr, S.A.
Molecular & Cellular Proteomics 11 (6): M111.014423. 1 June 2012

Proteomic analysis of mitotic RNA polymerase II reveals novel interactors and association with proteins dysfunctional in disease.
Moeller, A. and Xie, S.Q. and Hosp, F. and Lang, B. and Phatnani, H.P. and James, S. and Ramirez, F. and Collin, G.B. and Naggert, J.K. and Babu, M.M. and Greenleaf, A.L. and Selbach, M. and Pombo, A.
Molecular & Cellular Proteomics 11 (6): M111.011767. June 2012

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
Udeshi, N.D. and Mani, D.R. and Eisenhaure, T. and Mertins, P. and Jaffe, J.D. and Clauser, K.R. and Hacohen, N. and Carr, S.A.
Molecular & Cellular Proteomics 11 (5): 148-159. 1 May 2012

The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices.
Naba, A. and Clauser, K.R. and Hoersch, S. and Liu, H. and Carr, S.A. and Hynes, R.O.
Molecular & Cellular Proteomics 11 (4): M111.014647. 1 April 2012


Large-scale de novo prediction of physical protein-protein association.
Elefsinioti, A. and Sarac, O.S. and Hegele, A. and Plake, C. and Hubner, N.C. and Poser, I. and Sarov, M. and Hyman, A. and Mann, M. and Schroeder, M. and Stelzl, U. and Beyer, A.
Molecular & Cellular Proteomics 10 (11): M111.010629. November 2011

Identification of increased amounts of eppin protein complex components in sperm cells of diabetic and obese individuals by difference gel electrophoresis.
Paasch, U. and Heidenreich, F. and Pursche, T. and Kuhlisch, E. and Kettner, K. and Grunewald, S. and Kratzsch, J. and Dittmar, G. and Glander, H.J. and Hoflack, B. and Kriegel, T.M.
Molecular & Cellular Proteomics 10 (8): M110.007187. August 2011


The SILAC fly allows for accurate protein quantification in vivo.
Sury, M.D. and Chen, J.X. and Selbach, M.
Molecular & Cellular Proteomics 9 (10): 2173-2183. October 2010


A large number of protein expression changes occur early in life and precede phenotype onset in a mouse model for huntington disease.
Zabel, C. and Mao, L. and Woodman, B. and Rohe, M. and Wacker, M.A. and Klaere, Y. and Koppelstaetter, A. and Nebrich, G. and Klein, O. and Grams, S. and Strand, A. and Luthi-Carter, R. and Hartl, D. and Klose, J. and Bates, G.P.
Molecular & Cellular Proteomics 8 (4): 720-734. 1 April 2009


Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics.
Mertins, P. and Eberl, H.C. and Renkawitz, J. and Olsen, J.V. and Tremblay, M.L. and Mann, M. and Ullrich, A. and Daub, H.
Molecular & Cellular Proteomics 7 (9): 1763-1777. September 2008


Identification of VCP/p97, CHIP and amphiphysin II interaction partners using membrane-based human proteome arrays.
Grelle, G. and Kostka, S. and Otto, A. and Kersten, B. and Genser, K.F. and Mueller, E.C. and Waelter, S. and Boeddrich, A. and Stelzl, U. and Haenig, C. and Volkmer-Engert, R. and Landgraf, C. and Alberti, S. and Hoehfeld, J. and Stroedicke, M. and Wanker, E.E.
Molecular & Cellular Proteomics 5 (2): 234-244. 1 February 2006


High-throughput identification of potential Arabidopsis MAP kinases substrates.
Feilner, T. and Hultschig, C. and Lee, J. and Meyer, S. and Immink, R.G. and Koenig, A. and Possling, A. and Seitz, H. and Beveridge, A. and Scheel, D. and Cahill, D.J. and Lehrach, H. and Kreutzberger, J. and Kersten, B.
Molecular & Cellular Proteomics 4 (10): 1558-1568. 11 July 2005

This list was generated on Sat Jan 16 06:42:47 2021 CET.
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