Browse by Journal Title

Article

Tracking by weakly-supervised learning and graph optimization for whole-embryo c. elegans lineages.
Hirsch, P. and Malin-Mayor, C. and Santella, A. and Preibisch, S. and Kainmueller, D. and Funke, J.
Lecture Notes in Computer Science 13434 : 25-35. 16 September 2022

A comparative study of graph matching algorithms in computer vision.
Haller, S. and Feineis, L. and Hutschenreiter, L. and Bernard, F. and Rother, C. and Kainmüller, D. and Swoboda, P. and Savchynskyy, B.
Lecture Notes in Computer Science 13683 : 636-653. 2022

Data augmentation via partial nonlinear registration for brain-age prediction.
Schulz, M.A. and Koch, A. and Guarino, V.E. and Kainmueller, D. and Ritter, K.
Lecture Notes in Computer Science 13596 : 169-178. 2022

DenoiSeg: joint denoising and segmentation.
Buchholz, T.O. and Prakash, M. and Schmidt, D. and Krull, A. and Jug, F.
Lecture Notes in Computer Science 12535 : 324-337. 10 January 2021

Bionic tracking: using eye tracking to track biological cells in virtual reality.
Günther, U. and Harrington, K.I.S. and Dachselt, R. and Sbalzarini, I.F.
Lecture Notes in Computer Science 12535 : 280-297. 2021

Probabilistic deep learning for instance segmentation.
Rumberger, J.L. and Mais, L. and Kainmueller, D.
Lecture Notes in Computer Science 12535 : 445-457. 2021

PatchPerPix for instance segmentation.
Mais, L. and Hirsch, P. and Kainmueller, D.
Lecture Notes in Computer Science 12370 : 288-304. 20 November 2020

3D high resolution imaging of human heart for visualization of the cardiac structure.
Haliot, K. and Magat, J. and Ozenne, V. and Abell, E. and Dubes, V. and Bear, L. and Gilbert, S.H. and Trew, M.L. and Haissaguerre, M. and Quesson, B. and Bernus, O.
Lecture Notes in Computer Science 11504 : 196-207. 30 May 2019

A benchmark for epithelial cell tracking.
Funke, J. and Mais, L. and Champion, A. and Dye, N. and Kainmueller, D.
Lecture Notes in Computer Science 11134 : 437-445. 23 January 2019

Fast cross correlation for limited angle tomographic data.
Sánchez, R.M. and Mester, R. and Kudryashev, M.
Lecture Notes in Computer Science 11482 : 415-426. 2019

A semi-supervised approach to discover bivariate causality in large biological data.
Sokolovska, N. and Permiakova, O. and Forslund, S.K. and Zucker, J.D.
Lecture Notes in Computer Science 10934 : 406-420. 8 July 2018

Understanding chromatin structure: efficient computational implementation of polymer physics models.
Bianco, S. and Annunziatella, C. and Esposito, A. and Fiorillo, L. and Conte, M. and Campanile, R. and Chiariello, A.M.
Lecture Notes in Computer Science 11339 : 680-691. 2018

Reproducible and user-controlled software environments in HPC with Guix.
Courtes, L. and Wurmus, R.
Lecture Notes in Computer Science 9523 : 579-591. 2015

Uncertainty-driven forest predictors for vertebra localization and segmentation.
Richmond, D. and Kainmueller, D. and Glocker, B. and Rother, C. and Myers, G.
Lecture Notes in Computer Science 9349 : 653-660. 2015

Optimal joint segmentation and tracking of escherichia coli in the mother machine.
Jug, F. and Pietzsch, T. and Kainmüller, D. and Funke, J. and Kaiser, M. and van Nimwegen, E. and Rother, C. and Myers, G.
Lecture Notes in Computer Science 8677 : 25-36. 2014

Active graph matching for automatic joint segmentation and annotation of C. elegans.
Kainmueller, D. and Jug, F. and Rother, C. and Myers, G.
Lecture Notes in Computer Science 8673 : 81-88. 2014

Bridging the Gap: Methods and Teaching of F-A-S-T - Framing-Art-Science-Technology.
Schmidt, D. and Koalick, G. and Gassel, S. and Sery, C. and Groh, R. and Wacker, M.
Lecture Notes in Computer Science 8517 : 589-600. 2014

Automatic detection and classification of teeth in CT data.
Duy, N.T. and Lamecker, H. and Kainmueller, D. and Zachow, S.
Lecture Notes in Computer Science 7510 : 609-616. 2012

Prediction of transcription factor binding sites by integrating DNase digestion and histone modification.
Gusmao, E.G. and Dieterich, C. and Costa, I.G.
Lecture Notes in Computer Science 7409 : 109-119. 2012

Improving deformable surface meshes through omni-directional displacements and MRFs.
Kainmueller, D. and Lamecker, H. and Seim, H. and Zachow, S. and Hege, H.C.
Lecture Notes in Computer Science 6361 : 227-234. 2010

In silico screening for pathogenesis related-2 gene candidates in Vigna uguiculata transcriptome.
Wanderley-Nogueira, A.C. and Da Mota Soares-Cavalcanti, N. and Belarmino, L.C. and Barbosa-Silva, A. and Kido, E.A. and Do Monte, S.J.H. and Pandolfi, V. and Calsa-Junior, T. and Benko-Iseppon, A.M.
Lecture Notes in Computer Science 6160 : 70-81. 2010

Automatic extraction of mandibular nerve and bone from cone-beam CT data.
Kainmueller, D. and Lamecker, H. and Seim, H. and Zinser, M. and Zachow, S.
Lecture Notes in Computer Science 5762 : 76-83. 2009

Constructing phylogenetic supernetworks from quartets.
Grünewald, S. and Spillner, A. and Forslund, K. and Moulton, V.
Lecture Notes in Computer Science 5251 : 284-295. 2008

Coupling deformable models for multi-object segmentation.
Kainmueller, D. and Lamecker, H. and Zachow, S. and Hege, H.C.
Lecture Notes in Computer Science 5104 : 69-78. 2008

A customized class of functions for modeling and clustering gene expression profiles in embryonic stem cells.
Li, S. and Andrade-Navarro, M. and Sankoff, D.
Lecture Notes in Computer Science 5167 : 92-103. 2008

Detecting functional modules of transcription factor binding sites in the human genome.
Manke, T. and Dieterich, C. and Vingron, M.
Lecture Notes in Computer Science 3318 : 14-21. 2005

Suboptimal local alignments across multiple scoring schemes.
Michael, M. and Dieterich, C. and Stoye, J.
Lecture Notes in Computer Science 3240 : 99-110. 2004

Information theoretic based segments for language identification.
Harbeck, S. and Ohler, U. and Noth, E. and Niemann, H.
Lecture Notes in Computer Science 1692 : 187-192. 1999

Book Section

Adaptive multi-modal sensors.
Harrington, K.I. and Siegelmann, H.T.
In: 50 years of artificial intelligence. Lecture Notes in Computer Science, 4850 (4850). Springer, Berlin, Heidelberg, 164-173. ISBN 978-3-540-77295-8 2007