2025

CNSistent integration and feature extraction from somatic copy number profiles.
Streck, Adam ORCID: https://orcid.org/0000-0002-7302-0147 and Schwarz, Roland F. ORCID: https://orcid.org/0000-0001-9155-4268
GigaScience 14 : giaf104. 13 September 2025

2023

SODAR: managing multiomics study data and metadata.
Nieminen, M. ORCID: https://orcid.org/0000-0002-4180-8810, Stolpe, O. ORCID: https://orcid.org/0000-0002-8686-2941, Kuhring, M. ORCID: https://orcid.org/0000-0002-3287-0313, Weiner, J. ORCID: https://orcid.org/0000-0003-1438-7819, Pett, P. ORCID: https://orcid.org/0000-0002-5249-444X, Beule, D. ORCID: https://orcid.org/0000-0002-3284-0632 and Holtgrewe, M. ORCID: https://orcid.org/0000-0002-3051-1763
GigaScience 12 : giad052. 27 July 2023

2022

Spacemake: processing and analysis of large-scale spatial transcriptomics data.
Sztanka-Toth, T.R. ORCID: https://orcid.org/0000-0003-0185-5978, Jens, M. ORCID: https://orcid.org/0000-0002-6660-8743, Karaiskos, N. ORCID: https://orcid.org/0000-0001-7771-3947 and Rajewsky, N. ORCID: https://orcid.org/0000-0002-4785-4332
GigaScience 11 : giac064. 19 July 2022

2018

PiGx: reproducible genomics analysis pipelines with GNU Guix.
Wurmus, R. ORCID: https://orcid.org/0009-0003-0140-4189, Uyar, B. ORCID: https://orcid.org/0000-0002-3170-4890, Osberg, B. ORCID: https://orcid.org/0000-0002-9854-9901, Franke, V. ORCID: https://orcid.org/0000-0003-3606-6792, Gosdschan, A. ORCID: https://orcid.org/0000-0003-3045-8234, Wreczycka, K. ORCID: https://orcid.org/0000-0002-5994-4802, Ronen, J. ORCID: https://orcid.org/0000-0003-3980-6469 and Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0117
GigaScience 7 (12): giy123. 1 December 2018