Dataset

Additional file 1 of Associations of genetically predicted interleukin-6 and tumor necrosis factor signaling pathways with mortality among persons with colorectal cancer: a two-sample Mendelian randomization.
Bouka, Martina ORCID: https://orcid.org/0009-0006-8827-6723, Nimptsch, Katharina ORCID: https://orcid.org/0000-0001-7877-205X, Pham, Thu Thi ORCID: https://orcid.org/0000-0002-2129-0911, Bouras, Emmanouil, Kanellopoulou, Afroditi, Phipps, Amanda I., Van Guelpen, Bethany, Brenner, Hermann, Li, Li, Le Marchand, Loïc, Tsilidis, Konstantinos K. and Pischon, Tobias ORCID: https://orcid.org/0000-0003-1568-767X
[Dataset] 10 April 2026

Additional file 3 of BRAFV600E patient derived colon cancer organoids identify biomarkers of response to EGFR and BRAF inhibition and replicate clinical data.
Kotarac, Anna, Osumi, Hiroki, Malt, Alexander ORCID: https://orcid.org/0009-0005-4049-0846, Alp, Keziban Merve ORCID: https://orcid.org/0000-0001-9919-9838, Jarosch, Armin, Werner, Johannes, Benary, Manuela ORCID: https://orcid.org/0000-0002-3067-2030, Neumann, Christopher C.M., Yao, Ryoji, Mertins, Philipp ORCID: https://orcid.org/0000-0002-2245-528X, Eils, Roland, Beule, Dieter ORCID: https://orcid.org/0000-0002-3284-0632, Sers, Christine, Keilholz, Ulrich, Ishaque, Naveed ORCID: https://orcid.org/0000-0002-8426-901X, Stintzing, Sebastian and Vecchione, Loredana
[Dataset] 10 April 2026

Additional file 1 of Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk.
Singh, Manvendra ORCID: https://orcid.org/0000-0002-8626-5418, Qu, Yuliang ORCID: https://orcid.org/0000-0002-6203-0032, Pande, Amit ORCID: https://orcid.org/0009-0008-0826-973X, Zadora, Julianna ORCID: https://orcid.org/0000-0002-6906-7815, Herse, Florian ORCID: https://orcid.org/0000-0002-9305-8134, Gauster, Martin, Kong, Xuhui, Zheng, Rongyan, Anwar, Rabia, Stevanovic, Katarina, Dechend, Ralf ORCID: https://orcid.org/0000-0001-6636-3080, Cohen, Marie, Molvarec, Attila, Wang, Jichang ORCID: https://orcid.org/0000-0002-7027-0298, Konkel, Miriam K., Zhang, Bin ORCID: https://orcid.org/0000-0001-8835-8370, Feschotte, Cedric, Dveksler, Gabriela, Blois, Sandra M. ORCID: https://orcid.org/0000-0002-0434-2660, Hurst, Laurence D. and Izsvák, Zsuzsanna ORCID: https://orcid.org/0000-0002-2053-2384
[Dataset] 9 March 2026

Supplementary Tables 1 - 27 from Molecular Plasticity Results in Oncofetal Reprogramming and Therapeutic Vulnerabilities in Juvenile Myelomonocytic Leukemia.
Hartmann, Mark ORCID: https://orcid.org/0000-0002-4072-4658, Schönung, Maximilian ORCID: https://orcid.org/0000-0002-9778-9698, Rajak, Jovana ORCID: https://orcid.org/0009-0007-0229-8583, Maurer, Valentin ORCID: https://orcid.org/0000-0002-7670-0586, Hai, Ling ORCID: https://orcid.org/0000-0001-8719-2727, Bauer, Katharina, Hakobyan, Mariam ORCID: https://orcid.org/0000-0003-4719-5186, Stäble, Sina ORCID: https://orcid.org/0000-0002-5962-2440, Langstein, Jens ORCID: https://orcid.org/0009-0005-4284-0854, Jardine, Laura ORCID: https://orcid.org/0000-0003-4495-8205, Roelz, Roland ORCID: https://orcid.org/0000-0002-0985-7583, Bohler, Sheila ORCID: https://orcid.org/0000-0001-8860-9424, Khabirova, Eleonora ORCID: https://orcid.org/0000-0002-5891-6789, Maag, Abdul-Habib ORCID: https://orcid.org/0009-0008-5835-2910, Vonficht, Dominik ORCID: https://orcid.org/0000-0002-5579-7083, Lebrecht, Dirk ORCID: https://orcid.org/0000-0002-4483-2920, Bernt, Kathrin M. ORCID: https://orcid.org/0000-0002-0691-356X, Tan, Kai ORCID: https://orcid.org/0000-0002-9104-5567, Chen, Changya ORCID: https://orcid.org/0000-0003-4421-2462, Alikarami, Fatemeh ORCID: https://orcid.org/0000-0002-3600-9192, Meyer, Julia ORCID: https://orcid.org/0000-0001-5945-9885, Wang, Jun ORCID: https://orcid.org/0009-0005-6938-9821, Boch, Tobias ORCID: https://orcid.org/0000-0001-8588-4180, Flore, Viktoria ORCID: https://orcid.org/0009-0001-3023-433X, Lutsik, Pavlo ORCID: https://orcid.org/0000-0001-9383-8555, Milsom, Michael D. ORCID: https://orcid.org/0000-0002-3567-254X, Raffel, Simon ORCID: https://orcid.org/0000-0003-4671-1097, Buske, Christian ORCID: https://orcid.org/0000-0002-9782-9012, Haas, Simon ORCID: https://orcid.org/0000-0001-9227-2051, Haniffa, Muzlifah ORCID: https://orcid.org/0000-0002-3927-2084, Mallm, Jan-Philipp ORCID: https://orcid.org/0000-0002-7059-4030, Behjati, Sam ORCID: https://orcid.org/0000-0002-6600-7665, Bonder, Marc-Jan ORCID: https://orcid.org/0000-0002-8431-3180, Fröhling, Stefan ORCID: https://orcid.org/0000-0001-7907-4595, Stieglitz, Elliot ORCID: https://orcid.org/0000-0001-7032-4623, Niemeyer, Charlotte M. ORCID: https://orcid.org/0000-0003-3856-7937, Hey, Joschka ORCID: https://orcid.org/0000-0003-2842-764X, Flotho, Christian ORCID: https://orcid.org/0000-0001-9367-0553, Plass, Christoph ORCID: https://orcid.org/0000-0003-2554-3952, Erlacher, Miriam ORCID: https://orcid.org/0000-0002-7261-1447, Schlesner, Matthias ORCID: https://orcid.org/0000-0002-5896-4086 and Lipka, Daniel B. ORCID: https://orcid.org/0000-0001-5081-7869
[Dataset] 4 March 2026

Additional file 6 of Comparison of different decellularization protocols for porcine centrum tendineum diaphragmatis and diaphragmatic muscle – a base for effective recellularization.
Gaag, Bruno F., Tang, Peter, Klein, Oliver, Moosburner, Simon, Böhm, Agnes K., Lohmann, Theresa, Wieland, Jonas K., Contes, Victoria, Zhou, Yijun, Keshi, Eriselda, Haderer, Luna, Metzler, Eric ORCID: https://orcid.org/0000-0003-1735-6364, Schöwel-Wolf, Verena, Spuler, Simone ORCID: https://orcid.org/0000-0002-0155-1117, Rückert, Jens-Carsten, Pratschke, Johann, Sauer, Igor M., Andreas, Marco N. and Hillebrandt, Karl H.
[Dataset] 28 January 2026

Additional file 7 of Comparison of different decellularization protocols for porcine centrum tendineum diaphragmatis and diaphragmatic muscle – a base for effective recellularization.
Gaag, Bruno F., Tang, Peter, Klein, Oliver, Moosburner, Simon, Böhm, Agnes K., Lohmann, Theresa, Wieland, Jonas K., Contes, Victoria, Zhou, Yijun, Keshi, Eriselda, Haderer, Luna, Metzler, Eric ORCID: https://orcid.org/0000-0003-1735-6364, Schöwel-Wolf, Verena, Spuler, Simone ORCID: https://orcid.org/0000-0002-0155-1117, Rückert, Jens-Carsten, Pratschke, Johann, Sauer, Igor M., Andreas, Marco N. and Hillebrandt, Karl H.
[Dataset] 28 January 2026

Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D.
Chowdhury, Biswanath, Zhu, Kaiyuan, Li, Chaohui, Alsing, Jessica, Luebeck, Jens ORCID: https://orcid.org/0000-0003-4391-979X, Stefanova, Maria E., Chapman, Owen S., Kraft, Katerina, Zhang, Shu, Lim, Jun Yi Stanley, Xie, Yipeng, Kim, Yoon Jung, Wu, Sihan, Chavez, Lukas, Nir, Guy, Henssen, Anton G. ORCID: https://orcid.org/0000-0003-1534-778X, Mischel, Paul S., Chang, Howard Y. and Bafna, Vineet
[Dataset] 24 January 2026

Additional file 3 of From cigarettes to symptoms: the association between smoking and depression in the German National Cohort (NAKO).
Pischon, Tobias ORCID: https://orcid.org/0000-0003-1568-767X and Nimptsch, Katharina ORCID: https://orcid.org/0000-0001-7877-205X
[Dataset] 24 January 2026

Additional file 1 of DNA methylation analysis of NOTCH1 variants reveals the first episignature for non-syndromic congenital heart defects.
Klaassen, Sabine ORCID: https://orcid.org/0000-0001-5925-9912
[Dataset] 8 January 2026

Additional file 10 of ERV3-MLT1 provides cis-regulatory elements for human placental functioning and are commonly dysregulated in human-specific preeclampsia.
Anwar, Rabia, Pande, Amit ORCID: https://orcid.org/0009-0008-0826-973X, Singh, Manvendra ORCID: https://orcid.org/0000-0002-8626-5418, Huang, Zhi ORCID: https://orcid.org/0000-0002-8993-4912, Hallett, Eve ORCID: https://orcid.org/0009-0002-8268-8074, Xie, Yiran, Gellhaus, Alexandra, Herse, Florian ORCID: https://orcid.org/0000-0002-9305-8134, Nonn, Olivia ORCID: https://orcid.org/0000-0001-6385-2866, Gauster, Martin, Raskó, Tamás, Selbach, Matthias ORCID: https://orcid.org/0000-0003-2454-8751, Verlohren, Stefan ORCID: https://orcid.org/0000-0003-3507-8636, Staff, Anne Cathrine, Dechend, Ralf ORCID: https://orcid.org/0000-0001-6636-3080, Pecks, Ulrich, Blois, Sandra M. ORCID: https://orcid.org/0000-0002-0434-2660, Hurst, Laurence D. and Izsvák, Zsuzsanna ORCID: https://orcid.org/0000-0002-2053-2384
[Dataset] 5 November 2025

Bisulphite MLT1F2.
Anwar, Rabia
[Dataset] 10 October 2025

Additional file 4 of Sex differences on laser-induced choroidal neovascularization and short-chain fatty acid treatment in a mouse model.
Yan, Chufan, Andreeta Figueiredo, Caio ORCID: https://orcid.org/0000-0003-1517-5957, Pompös, Inga-Marie ORCID: https://orcid.org/0000-0001-9314-8378, Ugursu, Bilge ORCID: https://orcid.org/0000-0002-2488-4141, Arribas-Lange, Paula, Skosyrski, Sergej, Yang, Seulkee, Althoff, Petra, Kociok, Norbert, Joussen, Antonia M. and Wolf, Susanne A. ORCID: https://orcid.org/0000-0003-0922-8418
[Dataset] 20 July 2025

Additional file 2 of Co-option of an endogenous retrovirus (LTR7-HERVH) in early human embryogenesis: becoming useful and going unnoticed.
Izsvák, Zsuzsanna ORCID: https://orcid.org/0000-0002-2053-2384, Ma, Jin, Singh, Manvendra ORCID: https://orcid.org/0000-0002-8626-5418 and Hurst, Laurence D.
[Dataset] 5 July 2025

Supplementary Tables 1-24 from Spatial–Temporal Diversity of Extrachromosomal DNA Shapes Urothelial Carcinoma Evolution and the Tumor Immune Microenvironment.
Lv, Wei, Zeng, Yuche, Li, Conghui, Liang, Yuan, Tao, Huiying, Zhu, Yanfen, Sui, Xiaolong, Li, Yue, Jiang, Shiqi, Gao, Qingqing, Rodriguez-Fos, Elias ORCID: https://orcid.org/0000-0002-2555-0178, Prasad, Gino, Wang, Yuanmei, Zhou, Run, Xu, Zhe, Pan, Xiaoguang, Chen, Linlin, Xiang, Xi, Teng, Huajing, Sun, Chaoyang, Li, Wei, Qin, Tianyu, Dong, Wei, Li, Yongwei, Lan, Xun, Li, Xuesong, Lin, Lin, Bolund, Lars, Yang, Huanming, Verhaak, Roel G.W., Faltas, Bishoy M., Hansen, Jacob B., Wu, Sihan, Mischel, Paul S., Henssen, Anton G. ORCID: https://orcid.org/0000-0003-1534-778X, Bafna, Vineet, Luebeck, Jens, Regenberg, Birgitte, Luo, Yonglun, Lin, Chunhua and Han, Peng
[Dataset] 3 June 2025

Multicenter longitudinal quality assessment of MS-based proteomics in plasma and serum.
Kardell, Oliver, Gronauer, Thomas, von Toerne, Christine, Merl-Pham, Juliane, König, Ann-Christine, Barth, Teresa K., Mergner, Julia, Ludwig, Christina, Tüshaus, Johanna, Giesbertz, Pieter, Breimann, Stephan, Schweizer, Lisa, Müller, Torsten, Kliewer, Georg, Distler, Ute, Gomez-Zepeda, David, Popp, Oliver ORCID: https://orcid.org/0000-0001-6240-4666, Qin, Di, Teupser, Daniel, Cox, Jürgen, Imhof, Axel, Küster, Bernhard, Lichtenthaler, Stefan F., Krijgsveld, Jeroen, Tenzer, Stefan, Mertins, Philipp ORCID: https://orcid.org/0000-0002-2245-528X, Coscia, Fabian ORCID: https://orcid.org/0000-0002-2244-5081 and Hauck, Stefanie M.
[Dataset] 7 February 2025

Phyloseq object.
Bartolomaeus, T.U.P. ORCID: https://orcid.org/0000-0002-5156-7184
[Dataset] 13 February 2024

qPCR_results.
Bartolomaeus, T.U.P. ORCID: https://orcid.org/0000-0002-5156-7184
[Dataset] 13 February 2024