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Article

Single-cell multi-omics analysis identifies context-specific gene regulatory gates and mechanisms.
Malekpour, S.A. and Haghverdi, L. and Sadeghi, M.
Briefings in Bioinformatics 25 (3): bbae180. May 2024 (In Press)

Computational pan-genomics: status, promises and challenges.

Briefings in Bioinformatics 19 (1): 118-135. January 2018

OrthoDisease: tracking disease gene orthologs across 100 species.
Forslund, K. and Schreiber, F. and Thanintorn, N. and Sonnhammer, E.L.L.
Briefings in Bioinformatics 12 (5): 463-473. September 2011

InterPro: an integrated documentation resource for protein families, domains and functional sites.
Mulder, N.J. and Apweiler, R. and Attwood, T.K. and Bairoch, A. and Bateman, A. and Binns, D. and Biswas, M. and Bradley, P. and Bork, P. and Bucher, P. and Copley, R. and Courcelle, E. and Durbin, R. and Falquet, L. and Fleischmann, W. and Gouzy, J. and Griffith-Jones, S. and Haft, D. and Hermjakob, H. and Hulo, N. and Kahn, D. and Kanapin, A. and Krestyaninova, M. and Lopez, R. and Letunic, I. and Orchard, S. and Pagni, M. and Peyruc, D. and Ponting, C.P. and Servant, F. and Sigrist, C.J.
Briefings in Bioinformatics 3 : 225-235. 1 September 2002

Review

A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover.
Boileau, E. and Altmüller, J. and Naarmann-de Vries, I.S. and Dieterich, C.
Briefings in Bioinformatics 22 (6): bbab219. November 2021

A practical guide to the art of RNA gene prediction.
Meyer, I.M.
Briefings in Bioinformatics 8 (6): 396-414. November 2007