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| Item Type: | Article |
|---|---|
| Title: | ASHLEYS: automated quality control for single-cell Strand-seq data |
| Creators Name: | Eimer, C., Sanders, A.D., Korbel, J.O., Marschall, T. and Ebert, P. |
| Abstract: | Single-cell DNA template strand sequencing (Strand-seq) enables chromosome length haplotype phasing, construction of phased assemblies, mapping sister-chromatid exchange events and structural variant discovery. The initial quality control of potentially thousands of single-cell libraries is still done manually by domain experts. ASHLEYS automates this tedious task, delivers near-expert performance and labels even large data sets in seconds. AVAILABILITY AND IMPLEMENTATION: github.com/friendsofstrandseq/ashleys-qc, MIT license. |
| Source: | Bioinformatics |
| ISSN: | 1367-4803 |
| Publisher: | Oxford University Press |
| Volume: | 37 |
| Number: | 19 |
| Page Range: | 3356-3357 |
| Date: | 1 October 2021 |
| Official Publication: | https://doi.org/10.1093/bioinformatics/btab221 |
| PubMed: | View item in PubMed |
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