Helmholtz Gemeinschaft


iPath3.0: interactive pathways explorer v3

[thumbnail of 17394oa.pdf]
PDF - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader

Item Type:Article
Title:iPath3.0: interactive pathways explorer v3
Creators Name:Darzi, Y., Letunic, I., Bork, P. and Yamada, T.
Abstract:iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic elements into one connected and manually curated metabolic network. Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data. It also offers navigation at various levels of details to help users further investigate those trends and ultimately uncover novel biological insights. Support for multiple experimental conditions and time-series datasets, tools for generation of customization data, programmatic access, and a free user accounts system were introduced in this version to further streamline its workflow.
Keywords:Bacterial Gene Expression Regulation, Bacterial Proteins, Computer Graphics, Escherichia coli K12, Escherichia coli O157, Genomics, Internet, Metabolic Networks and Pathways, Metabolomics, Molecular Sequence Annotation, Proteomics, User-Computer Interface
Source:Nucleic Acids Research
Publisher:Oxford University Press
Page Range:W510-W513
Date:2 July 2018
Official Publication:https://doi.org/10.1093/nar/gky299
PubMed:View item in PubMed

Repository Staff Only: item control page


Downloads per month over past year

Open Access
MDC Library