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| Item Type: | Article |
|---|---|
| Title: | iPath3.0: interactive pathways explorer v3 |
| Creators Name: | Darzi, Y., Letunic, I., Bork, P. and Yamada, T. |
| Abstract: | iPath3.0 (http://pathways.embl.de) is a web-application for the visualization and analysis of cellular pathways. It is freely available and open to everyone. Currently it is based on four KEGG global maps, which summarize up to 158 traditional KEGG pathway maps, 192 KEGG modules and other metabolic elements into one connected and manually curated metabolic network. Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data. It also offers navigation at various levels of details to help users further investigate those trends and ultimately uncover novel biological insights. Support for multiple experimental conditions and time-series datasets, tools for generation of customization data, programmatic access, and a free user accounts system were introduced in this version to further streamline its workflow. |
| Keywords: | Bacterial Gene Expression Regulation, Bacterial Proteins, Computer Graphics, Escherichia coli K12, Escherichia coli O157, Genomics, Internet, Metabolic Networks and Pathways, Metabolomics, Molecular Sequence Annotation, Proteomics, User-Computer Interface |
| Source: | Nucleic Acids Research |
| ISSN: | 0305-1048 |
| Publisher: | Oxford University Press |
| Volume: | 46 |
| Number: | W1 |
| Page Range: | W510-W513 |
| Date: | 2 July 2018 |
| Official Publication: | https://doi.org/10.1093/nar/gky299 |
| PubMed: | View item in PubMed |
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