A versatile structural domain analysis server using profile weight matrices

Item Type:	Article
Title:	A versatile structural domain analysis server using profile weight matrices
Creators Name:	Schmidt, S. and Bork, P. and Dandekar, T.
Abstract:	The WEB tool "AnDom" assigns to a given protein sequence all experimentally determined structural domains contained within it, including multidomain and large proteins. The server uses profile specific matrices from custom generated multiple sequence alignments of all known SCOP domains (SCOP version 1.50). Prediction time is short allowing numerous applications for structural genomics including investigation of complex eucaryotic protein families. The WWW server is at http://www.bork.embl-heidelberg.de/AnDom, and profiles can be downloaded at ftp.bork.embl-heidelberg.de/pub/users/schmidt/AnDom.
Keywords:	Amino Acid Sequence, Amino Acid Sequence Homology, Protein Databases, Molecular Sequence Data, Protein Conformation, Proteins
Source:	Journal of Chemical Information and Computer Sciences
ISSN:	0095-2338
Publisher:	American Chemical Society
Volume:	42
Number:	2
Page Range:	405-407
Date:	March 2002
Official Publication:	https://doi.org/10.1021/ci010374r
PubMed:	View item in PubMed

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