Helmholtz Gemeinschaft

Search
Browse
Statistics
Feeds

Label-free protein-RNA interactome analysis identifies khsrp signaling downstream of the p38/Mk2 kinase complex as a critical modulator of cell cycle progression

[thumbnail of Original Article]
Preview
PDF (Original Article) - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader
2MB
[thumbnail of Supporting Information] Other (Supporting Information)
108MB

Item Type:Article
Title:Label-free protein-RNA interactome analysis identifies khsrp signaling downstream of the p38/Mk2 kinase complex as a critical modulator of cell cycle progression
Creators Name:Boucas, J., Fritz, C., Schmitt, A., Riabinska, A., Thelen, L., Peifer, M., Leeser, U., Nuernberg, P., Altmüller, J., Gaestel, M., Dieterich, C. and Reinhardt, H.C.
Abstract:Growing evidence suggests a key role for RNA binding proteins (RBPs) in genome stability programs. Additionally, recent developments in RNA sequencing technologies, as well as mass-spectrometry techniques, have greatly expanded our knowledge on protein-RNA interactions. We here use full transcriptome sequencing and label-free LC/MS/MS to identify global changes in protein-RNA interactions in response to etoposide-induced genotoxic stress. We show that RBPs have distinct binding patterns in response to genotoxic stress and that inactivation of the RBP regulator module, p38/MK2, can affect the entire spectrum of protein-RNA interactions that take place in response to stress. In addition to validating the role of known RBPs like Srsf1, Srsf2, Elavl1 in the genotoxic stress response, we add a new collection of RBPs to the DNA damage response. We identify Khsrp as a highly regulated RBP in response to genotoxic stress and further validate its role as a driver of the G1/S transition through the suppression of Cdkn1aP21 transcripts. Finally, we identify KHSRP as an indicator of overall survival, as well as disease free survival in glioblastoma multiforme.
Keywords:Cultured Cells, Cyclin-Dependent Kinase Inhibitor p21, DNA Damage, Disease-Free Survival, ELAV-Like Protein 1, G1 Phase Cell Cycle Checkpoints, Gene Expression Profiling, Glioblastoma, Intracellular Signaling Peptides and Proteins, Nuclear Proteins, Protein Serine-Threonine Kinases, Ribonucleoproteins, RNA, RNA-Binding Proteins, Serine-Arginine Splicing Factors, Signal Transduction, Trans-Activators, p38 Mitogen-Activated Protein Kinases, Animals, Mice
Source:PLoS ONE
ISSN:1932-6203
Publisher:Public Library of Science
Volume:10
Number:5
Page Range:e0125745
Date:2015
Additional Information:Copyright © 2015 Boucas et al This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
Official Publication:https://doi.org/10.1371/journal.pone.0125745
External Fulltext:View full text on PubMed Central
PubMed:View item in PubMed

Repository Staff Only: item control page

Downloads

Downloads per month over past year

Open Access
MDC Library