ASHLEYS: automated quality control for single-cell Strand-seq data

Tools

Preview	PDF (Original Article) - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader 379kB
Preview	PDF (Supplementary Material) - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader 924kB

Item Type:	Article
Title:	ASHLEYS: automated quality control for single-cell Strand-seq data
Creators Name:	Eimer, C., Sanders, A.D., Korbel, J.O., Marschall, T. and Ebert, P.
Abstract:	Single-cell DNA template strand sequencing (Strand-seq) enables chromosome length haplotype phasing, construction of phased assemblies, mapping sister-chromatid exchange events and structural variant discovery. The initial quality control of potentially thousands of single-cell libraries is still done manually by domain experts. ASHLEYS automates this tedious task, delivers near-expert performance and labels even large data sets in seconds. AVAILABILITY AND IMPLEMENTATION: github.com/friendsofstrandseq/ashleys-qc, MIT license.
Source:	Bioinformatics
ISSN:	1367-4803
Publisher:	Oxford University Press
Volume:	37
Number:	19
Page Range:	3356-3357
Date:	1 October 2021
Official Publication:	https://doi.org/10.1093/bioinformatics/btab221
PubMed:	View item in PubMed

Repository Staff Only: item control page

Download Statistics

Downloads

Downloads per month over past year