Helmholtz Gemeinschaft

Search
Browse
Statistics
Feeds

SMART: recent updates, new developments and status in 2020

[img]
Preview
PDF (Original Article) - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader
930kB

Item Type:Article
Title:SMART: recent updates, new developments and status in 2020
Creators Name:Letunic, I. and Khedkar, S. and Bork, P.
Abstract:SMART (Simple Modular Architecture Research Tool) is a web resource (https://smart.embl.de) for the identification and annotation of protein domains and the analysis of protein domain architectures. SMART version 9 contains manually curated models for more than 1300 protein domains, with a topical set of 68 new models added since our last update article. All the new models are for diverse recombinase families and subfamilies and as a set they provide a comprehensive overview of mobile element recombinases namely transposase, integrase, relaxase, resolvase, cas1 casposase and Xer like cellular recombinase. Further updates include the synchronization of the underlying protein databases with UniProt, Ensembl and STRING, greatly increasing the total number of annotated domains and other protein features available in architecture analysis mode. Furthermore, SMART's vector-based protein display engine has been extended and updated to use the latest web technologies and the domain architecture analysis components have been optimized to handle the increased number of protein features available.
Source:Nucleic Acids Research
ISSN:0305-1048
Publisher:Oxford University Press
Page Range:gkaa937
Date:26 October 2020
Official Publication:https://doi.org/10.1093/nar/gkaa937
PubMed:View item in PubMed

Repository Staff Only: item control page

Downloads

Downloads per month over past year

Open Access
MDC Library