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CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data

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Item Type:Article
Title:CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data
Creators Name:Bollen, S. and Leddin, M. and Andrade-Navarro, M.A. and Mah, N.
Abstract:SUMMARY: The current methods available to detect chromosomal abnormalities from DNA microarray expression data are cumbersome and inflexible. CAFE has been developed to alleviate these issues. It is implemented as an R package that analyzes Affymetrix *.CEL files, and comes with flexible plotting functions, easing visualization of chromosomal abnormalities. AVAILABILITY: CAFE is available from https://bitbucket.org/cob87icW6z/cafe/ as both source and compiled packages for Linux and Windows. It is released under the GPL version 3 license. CAFE will also be freely available from Bioconductor. CONTACT: sander.h.bollen@gmail.com, nancy.mah@mdc-berlin.de.
Keywords:Chromosome Aberrations, Gene Expression, Markov Chains, Oligonucleotide Array Sequence Analysis/methods, Software
Source:Bioinformatics
ISSN:1367-4803
Publisher:Oxford University Press (U.K.)
Volume:30
Number:10
Page Range:1484-1485
Date:15 May 2014
Official Publication:https://doi.org/10.1093/bioinformatics/btu028
PubMed:View item in PubMed

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