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SmashCommunity: A metagenomic annotation and analysis tool

Item Type:Article
Title:SmashCommunity: A metagenomic annotation and analysis tool
Creators Name:Arumugam, M. and Harrington, E.D. and Foerstner, K.U. and Raes, J. and Bork, P.
Abstract:SUMMARY: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses. AVAILABILITY: SmashCommunity is freely available at http://www.bork.embl.de/software/smash CONTACT: bork@embl.de.
Keywords:DNA Sequence Analysis, Genes, Metagenomics, Molecular Sequence Annotation, Phylogeny, Software
Source:Bioinformatics
ISSN:1367-4803
Publisher:Oxford University Press (U.K.)
Volume:26
Number:23
Page Range:2977-2978
Date:1 December 2010
Official Publication:https://doi.org/10.1093/bioinformatics/btq536
PubMed:View item in PubMed

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