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Review

Examining the healthy human microbiome concept.
Joos, R., Boucher, K., Lavelle, A., Arumugam, M., Blaser, M.J., Claesson, M.J., Clarke, G., Cotter, P.D., De Sordi, L., Dominguez-Bello, M.G., Dutilh, B.E., Ehrlich, S.D., Ghosh, T.S., Hill, C., Junot, C., Lahti, L., Lawley, T.D., Licht, T.R., Maguin, E., Makhalanyane, T.P., Marchesi, J.R., Matthijnssens, J., Raes, J., Ravel, J., Salonen, A., Scanlan, P.D., Shkoporov, A., Stanton, C., Thiele, I., Tolstoy, I., Walter, J., Yang, B., Yutin, N., Zhernakova, A., Zwart, H., Doré, J. and Ross, R.P.
Nature Reviews Microbiology 23 (3): 192-205. March 2025

Diversity within species: interpreting strains in microbiomes.
Van Rossum, T., Ferretti, P., Maistrenko, O.M. and Bork, P.
Nature Reviews Microbiology 18 : 491-506. September 2020

Tara Oceans: towards global ocean ecosystems biology.
Sunagawa, S., Acinas, S.G., Bork, P., Bowler, C., Eveillard, D., Gorsky, G., Guidi, L., Iudicone, D., Karsenti, E., Lombard, F., Ogata, H., Pesant, S., Sullivan, M.B., Wincker, P. and de Vargas, C.
Nature Reviews Microbiology 18 (8): 428-445. August 2020

Dual RNA-seq of pathogen and host.
Westermann, A.J., Gorski, S.A. and Vogel, J.
Nature Reviews Microbiology 10 (9): 618-630. September 2012

Mass spectrometry tools for the classification and identification of bacteria.
Sauer, S. and Kliem, M.
Nature Reviews Microbiology 8 (1): 74-82. 1 January 2010

Molecular eco-systems biology: towards an understanding of community function.
Raes, J. and Bork, P.
Nature Reviews Microbiology 6 (9): 693-699. September 2008