Article

A novel gene controls a new structure: piggyBac transposable element-derived 1, unique to mammals, controls mammal-specific neuronal paraspeckles.
Raskó, T., Pande, A. ORCID: https://orcid.org/0009-0008-0826-973X, Radscheit, K., Zink, A. ORCID: https://orcid.org/0000-0002-8489-6339, Singh, M. ORCID: https://orcid.org/0000-0002-8626-5418, Sommer, C., Wachtl, G., Kolacsek, O., Inak, G., Szvetnik, A., Petrakis, S., Bunse, M. ORCID: https://orcid.org/0000-0002-7554-2520, Bansal, V. ORCID: https://orcid.org/0000-0002-0944-7226, Selbach, M. ORCID: https://orcid.org/0000-0003-2454-8751, Orbán, T.I., Prigione, A. ORCID: https://orcid.org/0000-0001-9457-1952, Hurst, L.D. ORCID: https://orcid.org/0000-0002-1002-1054 and Izsvák, Z. ORCID: https://orcid.org/0000-0002-2053-2384
Molecular Biology and Evolution 39 (10): msac175. October 2022

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper.
Huerta-Cepas, J. ORCID: https://orcid.org/0000-0003-4195-5025, Forslund, K. ORCID: https://orcid.org/0000-0003-4285-6993, Coelho, L.P., Szklarczyk, D., Jensen, L.J. ORCID: https://orcid.org/0000-0001-7885-715X, von Mering, C. ORCID: https://orcid.org/0000-0001-7734-9102 and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Molecular Biology and Evolution 34 (8): 2115-2122. 1 August 2017

ETE 3: reconstruction, analysis and visualization of phylogenomic data.
Huerta-Cepas, J., Serra, F. and Bork, P. ORCID: https://orcid.org/0000-0002-2627-833X
Molecular Biology and Evolution 33 (6): 1635-1638. June 2016

Bio++: efficient extensible libraries and tools for computational molecular evolution.
Gueguen, L., Gaillard, S., Boussau, B., Gouy, M., Groussin, M., Rochette, N.C., Bigot, T., Fournier, D., Pouyet, F., Cahais, V., Bernard, A., Scornavacca, C., Nabholz, B., Haudry, A., Dachary, L., Galtier, N., Belkhir, K. and Dutheil, J.Y.
Molecular Biology and Evolution 30 (8): 1745-1750. August 2013

Differential evolution of the 13 Atlantic salmon Hox clusters.
Mungpakdee, S., Seo, H.C., Angotzi, A.R., Dong, X., Akalin, A. ORCID: https://orcid.org/0000-0002-0468-0140 and Chourrout, D.
Molecular Biology and Evolution 25 (7): 1333-1343. July 2008

Domain tree-based analysis of protein architecture evolution.
Forslund, K. ORCID: https://orcid.org/0000-0003-4285-6993, Henricson, A., Hollich, V. and Sonnhammer, E.L.L.
Molecular Biology and Evolution 25 (2): 254-264. 1 February 2008

QNet: an agglomerative method for the construction of phylogenetic networks from weighted quartets.
Grünewald, S., Forslund, K. ORCID: https://orcid.org/0000-0003-4285-6993, Dress, A. and Moulton, V.
Molecular Biology and Evolution 24 (2): 532-538. 1 February 2007

An evolutionary model for protein-coding regions with conserved RNA structure.
Pedersen, J.S., Forsberg, R., Meyer, I.M. ORCID: https://orcid.org/0000-0002-4048-3479 and Hein, J.
Molecular Biology and Evolution 21 (10): 1913-1922. October 2004

The frequency distribution of gene family sizes in complete genomes.
Huynen, M.A. and van Nimwegen, E.
Molecular Biology and Evolution 15 (5): 583-589. 1 May 1998

Review

Ten years of collaborative progress in the quest for orthologs.
Linard, B. ORCID: https://orcid.org/0000-0002-5555-898X, Ebersberger, I., McGlynn, S.E. ORCID: https://orcid.org/0000-0002-8199-7011, Glover, N., Mochizuki, T., Patricio, M., Lecompte, O., Nevers, Y., Thomas, P.D., Gabaldón, T., Sonnhammer, E., Dessimoz, C. and Uchiyama, I.
Molecular Biology and Evolution 38 (8): 3033-3045. August 2021

Advances and applications in the quest for orthologs.
Glover, N., Dessimoz, C., Ebersberger, I., Forslund, S.K. ORCID: https://orcid.org/0000-0003-4285-6993, Gabaldón, T., Huerta-Cepas, J., Martin, M.J., Muffato, M., Patricio, M., Pereira, C., Sousa da Silva, A., Wang, Y., Sonnhammer, E. and Thomas, P.D.
Molecular Biology and Evolution 36 (10): 2157-2164. October 2019

Letter

A mitochondrial ancestry of the hydrogenosomes of Nyctotherus ovalis.
van Hoek, A.H.A.M., Akhmanova, A.S., Huynen, M.A. and Hackstein, J.H.P.
Molecular Biology and Evolution 17 (1): 202-206. 1 January 2000