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SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans.
Kel, I., Chang, Z., Galluccio, N., Romeo, M., Beretta, S., Diomede, L., Mezzelani, A., Milanesi, L., Dieterich, C. and Merelli, I.
Molecular BioSystems 12 (11): 3447-3458. 1 November 2016

Dynamics of Srf, p300 and histone modifications during cardiac maturation in mouse.
Schueler, M., Zhang, Q., Schlesinger, J., Toenjes, M. and Sperling, S.R.
Molecular BioSystems 8 (2): 495-503. February 2012

A low number of SIC1 mRNA molecules ensures a low noise level in cell cycle progression of budding yeast.
Barberis, M., Beck, C., Amoussouvi, A., Schreiber, G., Diener, C., Herrmann, A. and Klipp, E.
Molecular BioSystems 7 (10): 2804-2812. October 2011

Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses.
Wienkoop, S., Weiss, J., May, P., Kempa, S., Irgang, S., Recuenco-Munoz, L., Pietzke, M., Schwemmer, T., Rupprecht, J., Egelhofer, V. and Weckwerth, W.
Molecular BioSystems 6 (6): 1018-1031. 18 June 2010

An integrative approach towards completing genome-scale metabolic networks.
Christian, N., May, P., Kempa, S., Handorf, T. and Ebenhoeh, O.
Molecular BioSystems 5 (12): 1889-1903. December 2009

Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes.
Toenjes, M., Schueler, M., Hammer, S., Pape, U.J., Fischer, J.J., Berger, F., Vingron, M. and Sperling, S.
Molecular BioSystems 4 (6): 589-598. June 2008