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Article

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training.
Lam, T.Y. and Meyer, I.M.
Algorithms for Molecular Biology 5 : 38. 9 December 2010

"Hook"-calibration of GeneChip-microarrays: chip characteristics and expression measures.
Binder, H., Krohn, K. and Preibisch, S.
Algorithms for Molecular Biology 3 : 11. 29 August 2008

"Hook"-calibration of GeneChip-microarrays: theory and algorithm.
Binder, H. and Preibisch, S.
Algorithms for Molecular Biology 3 : 12. 29 August 2008

Review

Syntenator: multiple gene order alignments with a gene-specific scoring function.
Roedelsperger, C. and Dieterich, C.
Algorithms for Molecular Biology 3 6 November 2008